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Author SHA1 Message Date
Rutger Helling 44dd001d87
gnu: par2cmdline: Update to 0.8.0. 
* gnu/packages/backup.scm (par2cmdline): Update to 0.8.0.
 2017-12-23 16:25:22 +01:00
Kei Kebreau 79bffa3ec8
gnu: chicken: Update to 4.13.0. 
* gnu/packages/scheme.scm (chicken): Update to 4.13.0.
[source]: Remove obsolete patches.
* gnu/packages/patches/chicken-CVE-2017-6949.patch,
gnu/packages/patches/chicken-CVE-2017-11343.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-12-23 09:18:43 -05:00
Tobias Geerinckx-Rice 28c03b4555
gnu: dovecot: Update to 2.3.0. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.
* gnu/services/mail.scm (dovecot-configuration)[director-doveadm-port]
[ssl-parameters-regenerate]: Delete fields.
[ssl-protocols]: Rename to...
[ssl-min-protocol]: ...this.
[mail-log-prefix, mdbox-rotate-size, ssl-cipher-list, imap-logout-format]:
Update default values.
* doc/guix.texi (Mail Services): Reflect the above changes to the service.
 2017-12-23 07:11:14 +01:00
Tobias Geerinckx-Rice 2f3800e53e
gnu: ruby: Use HTTPS for home pages. 
* gnu/packages/ruby.scm (ruby-hoe, bundler, ruby-rjb, ruby-libxml)
(ruby-permutation, ruby-gettext, ruby-test-unit, ruby-pry, ruby-tzinfo)
(ruby-tzinfo-data, ruby-term-ansicolor, ruby-pstree, ruby-json, ruby-rack)
(ruby-yard, ruby-ansi, ruby-rubytest, ruby-brass, ruby-qed, ruby-ae)
(ruby-lemon, ruby-rubytest-cli, ruby-hashery)[home-page]: Use HTTPS.
 2017-12-23 05:49:47 +01:00
Tobias Geerinckx-Rice 925131916d
gnu: ruby-tzinfo-data: Update to 1.2017.3. 
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2017.3
 2017-12-23 05:25:41 +01:00
Tobias Geerinckx-Rice 4237af8529
gnu: ruby-tzinfo: Update to 1.2.4. 
* gnu/packages/ruby.scm (ruby-tzinfo): Update to 1.2.4
 2017-12-23 05:25:32 +01:00
Tobias Geerinckx-Rice 484d68f27c
gnu: ocaml-utop: Update to 2.0.2. 
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.0.2
 2017-12-23 05:09:11 +01:00
Tobias Geerinckx-Rice 0e43721f32
gnu: ocaml-jbuilder: Update to 1.0+beta16. 
* gnu/packages/ocaml.scm (ocaml-jbuilder): Update to 1.0+beta16
 2017-12-23 05:09:11 +01:00
Tobias Geerinckx-Rice 36dba63b83
gnu: ocaml-ssl: Expand description. 
* gnu/packages/ocaml.scm (ocaml-ssl)[description]: Expand based on Debian's.
 2017-12-23 05:09:10 +01:00
Tobias Geerinckx-Rice 26b438e064
gnu: ocaml-ssl: Update to 0.5.5. 
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.5
 2017-12-23 05:09:10 +01:00
Tobias Geerinckx-Rice 7b20cd575e
gnu: ocaml-bitstring: Update to 2.1.1. 
* gnu/packages/ocaml.scm (ocaml-bitstring): Update to 2.1.1
 2017-12-23 05:09:09 +01:00
Tobias Geerinckx-Rice 50786325cd
gnu: fish: Mark up description. 
* gnu/packages/shells.scm (fish)[description]: Use @command{}.
 2017-12-23 05:09:09 +01:00
Tobias Geerinckx-Rice 66e86f2681
gnu: protobuf: Update to 3.5.1. 
* gnu/packages/protobuf.scm (protobuf): Update to 3.5.1.
 2017-12-23 04:48:17 +01:00
Kei Kebreau 84958de120
gnu: windowmaker: Enable xinerama support. 
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add libxinerama.
 2017-12-22 18:48:23 -05:00
Mason Hock 85f075a057
gnu: lilypond: Update to 2.19.80. 
* gnu/packages/music.scm (lilypond): Update to 2.19.80.
 2017-12-22 22:16:53 +01:00
Christopher Baines 3faa422d5f
gnu: Build wiredtiger with snappy support. 
This is probably necessary to get the MongoDB package in Guix to successfully
use the Guix wiredtiger package, as MongoDB it uses wiredtiger with snappy by
default.

* gnu/packages/databases.scm (wiredtiger)[arguments]: Add --enable-snappy to
  #:configure-flags.
  [inputs]: Add snappy.
 2017-12-22 19:23:53 +00:00
Tobias Geerinckx-Rice 58087bdddc
gnu: fish: Update to 2.7.1. 
* gnu/packages/shells.scm (fish): Update to 2.7.1.
 2017-12-22 19:48:44 +01:00
Kei Kebreau 9e3a8ed0eb
gnu: python-pillow: Update to 4.3.0. 
* gnu/packages/python.scm (python-pillow): Update to 4.3.0.
[propagated-inputs]: Add python-olefile.
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2017-12-22 11:49:43 -05:00
Kei Kebreau 3a1f26ff75
gnu: Add python-olefile. 
* gnu/packages/python.scm (python-olefile, python2-olefile): New variables.
 2017-12-22 11:49:28 -05:00
Leo Famulari 0054564b85
gnu: mariadb: Update to 10.1.29. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.29.
 2017-12-22 10:53:50 -05:00
Mathieu Othacehe 2cf5f4c144
file-systems: Move %control-groups from %base-file-systems to 
%elogind-file-systems.

* gnu/system/file-systems.scm (%base-file-systems): Move %control-groups from
here, to ...
(%elogind-file-systems): ... here.
 2017-12-22 15:03:10 +01:00
Mathieu Othacehe c729225b0f
file-systems: Do not mount hugetlb cgroup filesystem. 
On ARM32 without LPAE support, hugetlb control group is not supported.
As it is not needed by elogind, remove it for all platforms.

* gnu/system/file-systems.scm (%control-groups): Remove hugetlb from control
  groups platforms.
 2017-12-22 15:03:10 +01:00
Roel Janssen b9bf2b8985
gnu: Update r-mutationalpatterns to 1.4.2. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.2.
 2017-12-22 12:23:06 +01:00
Rutger Helling d633f2f62a
gnu: mutter: Add xorg-xserver-xwayland input. 
* gnu/packages/gnome.scm (mutter)[inputs]: Add xorg-server-xwayland.
[arguments]: Add '--with-xwayland-path' to #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-22 09:55:01 +01:00
Ludovic Courtès 42ff7d3be6
mapped-devices: 'luks-device-mapping' checks its source device. 
* gnu/system/mapped-devices.scm (check-luks-device): New procedure.
(luks-device-mapping)[check]: New field.
 2017-12-22 09:48:38 +01:00
Ludovic Courtès 4ca90ff597
mapped-devices: Add 'location' and 'check' fields. 
* gnu/system/mapped-devices.scm (<mapped-device>)[location]: New field.
(<mapped-device-type>)[check]: New field.
 2017-12-22 09:48:36 +01:00
Konrad Hinsen de2032b912
gnu: Add python-activepapers. 
* gnu/packages/python.scm (python-activepapers, python2-activepapers):
New variables.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2017-12-22 09:46:13 +01:00
Ludovic Courtès 4a32f58aa1
services: urandom-seed: Depend on udev. 
Suggested by Leo Famulari <leo@famulari.name>.

* gnu/services/base.scm (urandom-seed-shepherd-service): Add 'udev' to
'requirement'.
 2017-12-22 08:56:50 +01:00
Ludovic Courtès 8faaf8d7cc
services: urandom-seed: Deprecate the 'urandom-seed-service' procedure. 
* gnu/services/base.scm (urandom-seed-service-type)[default-value]: New
field.
(urandom-seed-service): Mark as deprecated.
(%base-services): Use URANDOM-SEED-SERVICE-TYPE directly.
* gnu/services/base.scm (%base-services):
* doc/guix.texi (Base Services): Document 'urandom-seed-service-type'
instead of 'urandom-seed-service'.
 2017-12-22 08:56:50 +01:00
Ludovic Courtès 4e9fd50857
services: urandom-seed: Become a dependency of 'user-processes'. 
This ensures that 'urandom-seed' is started before programs that rely on
sources of randomness.

Fixes <https://bugs.gnu.org/29773>.
Reported by Leo Famulari <leo@famulari.name>.

* gnu/services/base.scm (urandom-seed-shepherd-service): Change
'requirement' to (file-systems).
(urandom-seed-service-type): Extend USER-PROCESSES-SERVICE-TYPE.
 2017-12-22 08:56:50 +01:00
Ludovic Courtès 206a28d84a
services: 'user-processes-service-type' can now be extended. 
* gnu/services/base.scm (user-processes-shepherd-service): New
procedure, taken from former 'user-processes-service-type'.  Add
REQUIREMENTS argument; remove GRACE-DELAY argument.
(user-processes-service-type): Redefine in terms of 'service-type'.
(user-processes-service): Remove.
(file-system-service-type): Extend USER-PROCESSES-SERVICE-TYPE.
* gnu/system.scm (essential-services): Use USER-PROCESSES-SERVICE-TYPE
directly.
 2017-12-22 08:56:50 +01:00
Mathieu Othacehe a468f89743
system: examples: Add missing initrd to beaglebone-black.tmpl. 
* gnu/system/examples/beaglebone-black.tmpl (operating-system): Add the
  initrd with "omap_hsmmc" as an extra-module.
 2017-12-22 08:49:57 +01:00
Ricardo Wurmus 5145001a15
gnu: Add meandmyshadow. 
* gnu/packages/games.scm (meandmyshadow): New variable.
 2017-12-22 07:56:55 +01:00
Ricardo Wurmus 5f66a0a78b
gnu: emacs-ivy: Install documentation. 
* gnu/packages/emacs.scm (emacs-ivy)[arguments]: Add phase "install-doc".
[native-inputs]: Add texinfo.
 2017-12-22 07:56:55 +01:00
Ricardo Wurmus a837423412
gnu: emacs-ivy: Update to 0.10.0. 
* gnu/packages/emacs.scm (emacs-ivy): Update to 0.10.0.
 2017-12-22 07:56:54 +01:00
Tobias Geerinckx-Rice 8c4ca853e0
gnu: Add plzip. 
* gnu/packages/compression.scm (plzip): New public variable.
 2017-12-22 01:06:03 +01:00
Tobias Geerinckx-Rice 2e3b1a92f4
gnu: Add lzlib. 
* gnu/packages/compression.scm (lzlib): New public variable.
 2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice 5dca4c76ac
gnu: Add clzip. 
* gnu/packages/compression.scm (clzip): New public variable.
 2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice 34e8cf225c
gnu: Add lunzip. 
* gnu/packages/compression.scm (lunzip): New public variable.
 2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice 82d57f126c
gnu: Add hungrycat. 
* gnu/packages/admin.scm (hungrycat): New public variable.
 2017-12-22 01:06:01 +01:00
Tobias Geerinckx-Rice e807306324
gnu: zstd: Use default ‘check’ target. 
* gnu/packages/compression.scm (zstd)[arguments]: Don't set #:test-target.
 2017-12-22 01:06:01 +01:00
Leo Famulari 9c3ad422d0
gnu: libgxps: Fix CVE-2017-11590. 
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (libgxps)[source]: Use it.
 2017-12-21 14:17:35 -05:00
Leo Famulari 5dc0e0b055
gnu: imagemagick: Update to 6.9.9-27. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-27.
 2017-12-21 13:23:02 -05:00
Leo Famulari 382e5f1947
gnu: gnupg: Update to 2.2.4. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.4.
 2017-12-21 12:59:56 -05:00
Tobias Geerinckx-Rice 00840ee004
gnu: weechat: Run tests. 
* gnu/packages/irc.scm (weechat)[native-inputs]: Add cpputest.
[arguments]: Add ‘-DENABLE_TESTS=ON’ to #:configure-flags.  Add
‘disable-failing-tests’ phase to do just that.  Run the others.
 2017-12-21 18:43:01 +01:00
Tobias Geerinckx-Rice f45e314e19
gnu: zstd: Disable unrelated format support. 
* gnu/packages/compression.scm (zstd)[arguments]: Add HAVE_LZMA=0 to
 2017-12-21 18:43:01 +01:00
Tobias Geerinckx-Rice 5308f15b43
gnu: zstd: Update to 1.3.3. 
* gnu/packages/compression.scm (zstd): Update to 1.3.3.
 2017-12-21 18:43:01 +01:00
Leo Famulari 806e891e85
gnu: gnupg@2.0: Superseded by the latest GnuPG. 
The 2.0 series of GnuPG will stop receiving upstream support on
2017-12-31. From the release announcement of GnuPG 2.2.0:

"This release marks the start of a new long term support series
to replace the 2.0.x series which will reach end-of-life on 2017-12-31."

https://lists.gnupg.org/pipermail/gnupg-announce/2017q3/000413.html

* gnu/packages/gnupg.scm (gnupg-2.0)[properties]: New field.
 2017-12-21 12:37:25 -05:00
Leo Famulari 0c9c9526bb
gnu: libxslt: Fix CVE-2017-5029 and re-apply the fix for CVE-2016-4738. 
This is a followup to commit 2663c38826.

* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
* gnu/packages/patches/libxslt-CVE-2017-5029.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-12-21 12:28:47 -05:00
Leo Famulari 2a0e3d1635
gnu: libarchive: Fix CVE-2017-14502. 
* gnu/packages/patches/libarchive-CVE-2017-14502.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (libarchive-3.3.2)[source]: Use it.
 2017-12-21 12:28:43 -05:00
Konrad Hinsen c521c8f1a4
gnu: Add python-tempdir. 
* gnu/packages/python.scm (python-tempdir, python2-tempdir): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-21 10:44:39 +01:00
Leo Famulari ce16d312c6
gnu: libexif: Fix CVE-2017-7544. 
* gnu/packages/patches/libexif-CVE-2017-7544.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (feh)[source]: Use it.
 2017-12-21 03:24:55 -05:00
Efraim Flashner 417f3d494f
gnu: xboing: Fix CVE-2004-0149. 
* gnu/packages/patches/xboing-CVE-2004-0149: New file.
* gnu/packages/games.scm (xboing)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-12-21 09:04:34 +02:00
Leo Famulari dab2542f84
gnu: mupdf: Update to 1.12.0 [fixes CVE-2017-15369]. 
* gnu/packages/pdf.scm (mupdf): Update to 1.12.0.
[source]: Remove obsolete patches.
[inputs]: Add freeglut.
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch,
gnu/packages/patches/mupdf-CVE-2017-15587.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Update and
rename to...
* gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch: ... new file.
 2017-12-21 02:00:59 -05:00
Tobias Geerinckx-Rice 91213c384b
gnu: weechat: Update to 2.0.1. 
* gnu/packages/irc.scm (weechat): Update to 2.0.1.
 2017-12-21 03:20:11 +01:00
Tobias Geerinckx-Rice fa79a908bb
gnu: Add perl-test-requiresinternet. 
* gnu/packages/perl-check.scm (perl-test-requiresinternet): New public
variable.
 2017-12-21 03:20:11 +01:00
Leo Famulari dacd8cf2e8
gnu: links: Fix-CVE-2017-11114. 
* gnu/packages/patches/links-CVE-2017-11114.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web-browsers.scm (links)[source]: Use it.
 2017-12-20 20:08:35 -05:00
Mark H Weaver 66df43b9ae
gnu: linux-libre: Update to 4.14.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.8.
(%linux-libre-hash): Update hash.
 2017-12-20 18:28:36 -05:00
Mark H Weaver 0786e4bd12
gnu: linux-libre@4.9: Update to 4.9.71. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.71.
 2017-12-20 18:27:48 -05:00
Mark H Weaver 770635e11d
gnu: linux-libre@4.4: Update to 4.4.107. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.107.
 2017-12-20 18:27:08 -05:00
Ricardo Wurmus 4305176096
gnu: microscheme: Fix home page. 
* gnu/packages/avr.scm (microscheme)[home-page]: Use GitHub project page.

Fixes <https://bugs.gnu.org/29791>.
 2017-12-20 23:18:24 +01:00
Leo Famulari 0e06bec250
gnu: gpgme: Build with the latest GnuPG. 
* gnu/packages/gnupg.scm (gpgme)[inputs]: Use the latest gnupg package.
[arguments]: Keep a reference to the gnupg package used for build.
 2017-12-20 16:41:41 -05:00
Leo Famulari e6f63412c9
gnu: python-pygpgme: Use GnuPG 1 for the test suite. 
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[inputs]: Use gnupg-1
and make it a native-input.
 2017-12-20 15:13:22 -05:00
Leo Famulari 5965b08307
gnu: libassuan: Update to 2.5.1. 
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.1.
 2017-12-20 15:11:27 -05:00
Tobias Geerinckx-Rice 48a9654ad6
gnu: exim: Update to 4.90. 
* gnu/packages/mail.scm (exim): Update to 4.90.
 2017-12-20 16:50:28 +01:00
Leo Famulari 8bc6956bbd
gnu: rng-tools: Update to 6.1. 
Rng-tools development appears to have moved to GitHub [0]:

"NOTE: The rng-tools project hasn't seen updates in some time, but is
still in active use. To facilitate ongoing development, the rng-tools
project is moved to here:
https://github.com/nhorman/rng-tools"

[0]
https://sourceforge.net/p/gkernel/wiki/Home/

* gnu/packages/linux.scm (rng-tools): Update to 6.1.
[source]: Use new upstream URL and give a descriptive file-name.
[arguments]: Add a 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and pkg-config.
[inputs]: Add sysfsutils.
 2017-12-20 03:53:52 -05:00
Rutger Helling 09a91adcf8
gnu: libressl: Update to 2.6.4. 
* gnu/packages/tls.scm (libressl): Update to 2.6.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-12-20 02:56:55 -05:00
Leo Famulari afcbc348a3
gnu: babl: Update to 0.1.38. 
* gnu/packages/gimp.scm (babl): Update to 0.1.38.
 2017-12-20 01:40:14 -05:00
Leo Famulari 74c96b0b09
gnu: webkitgtk: Update to 2.18.4 [fixes CVE-2017-{7156,13856,13866,13870}]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.4.
 2017-12-19 14:52:15 -05:00
Ricardo Wurmus 57ae890fb3
gnu: r-htmltable: Update to 1.11.0. 
* gnu/packages/web.scm (r-htmltable): Update to 1.11.0.
[propagated-inputs]: Add r-dplyr, r-htmltools, r-rstudioapi, and r-tidyr.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus aead9e1bc5
gnu: r-testthat: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.0.
[propagated-inputs]: Add r-cli, r-rlang, and r-withr.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus 2976f304e2
gnu: Add r-cli. 
* gnu/packages/cran.scm (r-cli): New variable.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus d03949449a
gnu: r-hardyweinberg: Update to 1.5.9. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.5.9.
[propagated-inputs]: Add r-rsolnp.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus cb8b4c1196
gnu: Add r-rsolnp. 
* gnu/packages/cran.scm (r-rsolnp): New variable.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus 02cdb45f34
gnu: Add r-truncnorm. 
* gnu/packages/cran.scm (r-truncnorm): New variable.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus 5378f38332
gnu: r-curl: Update to 3.1. 
* gnu/packages/web.scm (r-curl): Update to 3.1.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus f9f1291bc0
gnu: r-ade4: Update to 1.7-10. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-10.
[propagated-inputs]: Add r-mass.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus 83b0e1d53f
gnu: r-registry: Update to 0.5. 
* gnu/packages/statistics.scm (r-registry): Update to 0.5.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus d2dc69b8be
gnu: r-iterators: Update to 1.0.9. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus 4a1945da16
gnu: r-segmented: Update to 0.5-3.0. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 0a1b447e2b
gnu: r-rprojroot: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 102a271870
gnu: r-rcpparmadillo: Update to 0.8.300.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 0300cacae1
gnu: r-plotrix: Update to 3.7. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 004e108aad
gnu: r-git2r: Update to 0.20.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 069e3b5c09
gnu: r-backports: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus 1028f9ef11
gnu: r-yaml: Update to 2.1.16. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus de3fd9253f
gnu: r-reshape2: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus d0c1a402db
gnu: r-digest: Update to 0.6.13. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus 2960f9658f
gnu: r-vcd: Update to 1.4-4. 
* gnu/packages/cran.scm (r-vcd): Update to 1.4-4.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus f46a74e9f0
gnu: r-proxy: Update to 0.4-20. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-20.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus b9e8a5c594
gnu: r-biomart: Update to 2.34.1. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1.
[propagated-inputs]: Add r-httr.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus 11e42209a8
gnu: r-gviz: Update to 1.22.2. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus 2ccd850192
gnu: r-gqtlstats: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus 28d25d037e
gnu: r-rtracklayer: Update to 1.38.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus d41f678420
gnu: r-limma: Update to 3.34.4. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4.
 2017-12-19 20:35:03 +01:00
Ricardo Wurmus ab0dd8ac10
gnu: r-edger: Update to 3.20.2. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2.
 2017-12-19 20:35:03 +01:00
Ricardo Wurmus 7665fb39f5
gnu: r-biocstyle: Update to 2.6.1. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1.
 2017-12-19 20:35:03 +01:00
Ricardo Wurmus 756ac7254c
gnu: r-dexseq: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
 2017-12-19 20:35:03 +01:00
Ricardo Wurmus 8d11ef4470
gnu: r-vegan: Update to 2.4-5. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
 2017-12-19 20:35:02 +01:00
Danny Milosavljevic 68f1869cfc
gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation. 
* gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
 2017-12-19 18:11:56 +01:00