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15229 Commits (3586a3e9a9b0c71b11c47ff63279b2e8a24b5704)

Author SHA1 Message Date
Ricardo Wurmus 162a4a0323
gnu: Add enigma. 
* gnu/packages/games.scm (enigma): New variable.
 2017-04-28 17:46:39 +02:00
Ricardo Wurmus d00d6cea66
gnu: Add xerces-c. 
* gnu/packages/xml.scm (xerces-c): New variable.
 2017-04-28 17:46:39 +02:00
Kei Kebreau 8832c96340
gnu: schismtracker: Update to 20170420. 
* gnu/packages/music.scm (schismtracker): Update to 20170420.
 2017-04-28 11:34:13 -04:00
David Thompson 0cb9fba3dc
gnu: awscli: Add python-pyyaml input. 
Without this input, 'aws ec2 import-key-pair' doesn't work.

* gnu/packages/python.scm (awscli)[propagated-inputs]: Add python-pyyaml.
 2017-04-28 09:20:37 -04:00
宋文武 28172178b1
gnu: virt-manager: Update to 1.4.1. 
* gnu/packages/qemu.scm (virt-manager): Update to 1.4.1.
 2017-04-28 21:01:01 +08:00
宋文武 9271dfddc9
gnu: python-libvirt: Update to 3.2.0. 
* gnu/packages/qemu.scm (python-libvirt, python2-libvirt): Update to 3.2.0.
 2017-04-28 20:53:15 +08:00
宋文武 c3c0316215
gnu: libvirt-glib: Update to 1.0.0. 
* gnu/packages/qemu.scm (libvirt-glib): Update to 1.0.0.
 2017-04-28 20:23:56 +08:00
宋文武 52caf4b9fd
gnu: libvirt: Update to 3.2.0. 
* gnu/packages/qemu.scm (libvirt): Update to 3.2.0.
 2017-04-28 20:19:20 +08:00
Roel Janssen 4646a79c65
gnu: r-preprocesscore: Update to 1.38.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0.
 2017-04-28 11:05:43 +02:00
Roel Janssen 524bfe2dbf
gnu: r-msnid: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0.
 2017-04-28 11:05:42 +02:00
Roel Janssen 82359c72cb
gnu: r-msnbase: Update to 2.2.0. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0.
 2017-04-28 11:05:41 +02:00
Roel Janssen 5bfa6e090d
gnu: r-pcamethods: Update to 1.68.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.
 2017-04-28 11:05:40 +02:00
Roel Janssen 63bf2102cd
gnu: r-mzid: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.
 2017-04-28 11:05:38 +02:00
Roel Janssen 60c08b2ff4
gnu: r-vsn: Update to 3.44.0. 
* gnu/packages/bioinformatics.scm (r-vsn):
[source]: Update to 3.44.0,
[propagated-inputs]: Add r-hexbin.
 2017-04-28 11:05:37 +02:00
Roel Janssen bd3cc4cc52
gnu: r-affy: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.
 2017-04-28 11:05:37 +02:00
Roel Janssen 71abcc4cbf
gnu: r-affyio: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.
 2017-04-28 11:05:36 +02:00
Roel Janssen e440ad6d4f
gnu: r-mzr: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0.
 2017-04-28 11:05:35 +02:00
Roel Janssen 5b1337cc60
gnu: r-protgenerics: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0.
 2017-04-28 11:05:33 +02:00
Roel Janssen 1d09d017db
gnu: r-sva: Update to 3.24.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0.
 2017-04-28 11:05:20 +02:00
Roel Janssen d52d2d623a
gnu: r-copywriter: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0.
 2017-04-28 11:05:19 +02:00
Roel Janssen 7d72f2a803
gnu: r-chipseq: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0.
 2017-04-28 11:05:18 +02:00
Roel Janssen 04049a5f2c
gnu: r-rhdf5: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0.
 2017-04-28 11:05:18 +02:00
Roel Janssen ff58a1af98
gnu: r-tximport: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0.
 2017-04-28 11:05:16 +02:00
Roel Janssen cf4ac4e465
gnu: r-mutationalpatterns: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns):
[source]: Update to 1.2.0,
[propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5,
  r-bsgenome-hsapiens-ucsc-hg19.
 2017-04-28 11:05:13 +02:00
Roel Janssen ccd2aade98
gnu: r-bamsignals: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0.
 2017-04-28 11:05:12 +02:00
Roel Janssen 37631ddc28
gnu: r-rhtslib: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0.
 2017-04-28 11:05:11 +02:00
Roel Janssen 8444f6067a
gnu: r-zlibbioc: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0.
 2017-04-28 11:05:10 +02:00
Roel Janssen a7b90ea990
gnu: r-motifrg: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.20.0.
 2017-04-28 11:05:09 +02:00
Roel Janssen 0fce7d9be5
gnu: r-seqlogo: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.42.0.
 2017-04-28 11:05:08 +02:00
Roel Janssen 3ae82c8dfe
gnu: r-genomation: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.8.0.
 2017-04-28 11:05:07 +02:00
Roel Janssen 08b9224d2d
gnu: r-seqpattern: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.8.0.
 2017-04-28 11:05:06 +02:00
Roel Janssen 5999359f56
gnu: r-impute: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.50.0.
 2017-04-28 11:05:06 +02:00
Roel Janssen c54a702a28
gnu: r-bsgenome: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.44.0.
 2017-04-28 11:05:04 +02:00
Roel Janssen 6e70b6d63c
gnu: r-topgo: Update to 2.28.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.28.0.
 2017-04-28 11:05:03 +02:00
Roel Janssen 56373771b3
gnu: r-graph: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.54.0.
 2017-04-28 11:05:02 +02:00
Roel Janssen 5d0301a339
gnu: r-genomicfeatures: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.0.
 2017-04-28 11:05:01 +02:00
Roel Janssen 2ea7155b04
gnu: r-rtracklayer: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.0.
 2017-04-28 11:05:00 +02:00
Roel Janssen 5f16d1e47d
gnu: r-genomicalignments: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.0.
 2017-04-28 11:04:59 +02:00
Roel Janssen d006ee31af
gnu: r-summarizedexperiment: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment):
[source]: Update to 1.6.0,
[propagated-inputs]: Add r-delayedarray.
 2017-04-28 11:04:58 +02:00
Roel Janssen 6bf5543be8
gnu: r-rsamtools: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.28.0.
 2017-04-28 11:04:57 +02:00
Roel Janssen 3ed41af6b5
gnu: r-biostrings: Update to 2.44.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.0.
 2017-04-28 11:04:56 +02:00
Roel Janssen 502da6ffc7
gnu: r-biocparallel: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.0.
 2017-04-28 11:04:55 +02:00
Roel Janssen 78e7a589c9
gnu: r-biomart: Update to 2.32.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.0.
 2017-04-28 11:04:47 +02:00
Roel Janssen aafaab22d3
gnu: r-annotationdbi: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.0.
 2017-04-28 11:04:46 +02:00
Roel Janssen b2fff403c8
gnu: r-biobase: Update to 2.36.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.0.
 2017-04-28 11:04:44 +02:00
Roel Janssen 1859712bef
gnu: r-genomicranges: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.0.
 2017-04-28 11:04:42 +02:00
Roel Janssen 17a02f5149
gnu: r-xvector: Update to 0.16.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.16.0.
 2017-04-28 11:04:42 +02:00
Roel Janssen abf5a14e11
gnu: r-limma: Update to 3.32.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.0.
 2017-04-28 11:04:41 +02:00
Roel Janssen d2d7af9832
gnu: r-variantannotation: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.0.
 2017-04-28 11:04:40 +02:00
Roel Janssen 00ffd55fa1
gnu: r-edger: Update to 3.18.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.18.0.
 2017-04-28 11:04:39 +02:00
Roel Janssen 38b99ccc57
gnu: r-genomeinfodb: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): [source] Update to 1.12.0,
[propagated-inputs]: Add r-genomeinfodbdata.
 2017-04-28 11:04:37 +02:00
Roel Janssen 7d9ab5d920
gnu: r-iranges: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.0.
 2017-04-28 11:04:36 +02:00
Roel Janssen f1f380185b
gnu: r-s4vectors: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.0.
 2017-04-28 11:04:34 +02:00
Roel Janssen 9b02d49cb0
gnu: r-dnacopy: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.0.
 2017-04-28 11:04:33 +02:00
Roel Janssen 2e11beec48
gnu: r-bioccheck: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0.
 2017-04-28 11:04:32 +02:00
Roel Janssen 3bef24c968
gnu: r-biocstyle: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0.
[propagated-inputs]: Add r-bookdown, r-knitr, r-rmarkdown, r-yaml.
 2017-04-28 11:04:31 +02:00
Roel Janssen 68eac34974
gnu: r-biocviews: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0.
 2017-04-28 11:04:30 +02:00
Roel Janssen 3bef15286a
gnu: r-biocinstaller: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0.
 2017-04-28 11:04:28 +02:00
Roel Janssen 28a5b3f2c6
gnu: r-biocgenerics: Update to 0.22.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0.
 2017-04-28 11:04:26 +02:00
Roel Janssen 795a604526
gnu: r-grohmm: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.
 2017-04-28 11:04:25 +02:00
Roel Janssen 026dc7e4fc
gnu: r-systempiper: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.
 2017-04-28 11:04:24 +02:00
Roel Janssen 34c276f761
gnu: r-shortread: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.
 2017-04-28 11:04:22 +02:00
Roel Janssen 9511773423
gnu: r-gostats: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.
 2017-04-28 11:04:21 +02:00
Roel Janssen ca0289aee7
gnu: r-category: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.
 2017-04-28 11:04:20 +02:00
Roel Janssen c584a07ffd
gnu: r-gseabase: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.
 2017-04-28 11:04:19 +02:00
Roel Janssen 8ab6f241ea
gnu: r-rbgl: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0.
 2017-04-28 11:04:16 +02:00
Roel Janssen 46972a4427
gnu: r-annotationforge: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.
 2017-04-28 11:04:12 +02:00
Roel Janssen 3ae74e451c
gnu: r-deseq2: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.
 2017-04-28 11:04:09 +02:00
Roel Janssen b5bc3a3963
gnu: r-genefilter: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.
 2017-04-28 11:04:06 +02:00
Roel Janssen 97a50e4f34
gnu: r-geneplotter: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.
 2017-04-28 11:03:59 +02:00
Roel Janssen dbab99b6d2
gnu: r-annotate: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.
 2017-04-28 11:03:47 +02:00
Roel Janssen ffef27f3d2
gnu: Add r-genomeinfodbdata. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.
 2017-04-28 10:17:06 +02:00
Roel Janssen 71e34e6b5b
gnu: Add r-delayedarray. 
* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
 2017-04-28 10:15:12 +02:00
Roel Janssen 2abfc5b827
gnu: Add r-bookdown. 
* gnu/packages/bioinformatics.scm (r-bookdown): New variable.
 2017-04-28 10:09:31 +02:00
Mark H Weaver 833361a483
gnu: linux-libre: Update to 4.10.13. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.13.
(%linux-libre-hash): Update hash.
 2017-04-28 00:42:46 -04:00
Mark H Weaver f28851be95
gnu: linux-libre@4.9: Update to 4.9.25. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.25.
 2017-04-28 00:40:48 -04:00
Mark H Weaver 01c58cb3e9
gnu: linux-libre@4.4: Update to 4.4.64. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.64.
 2017-04-28 00:39:53 -04:00
Marius Bakke 244d4f4877
gnu: serf: Update to 1.3.9. 
* gnu/packages/patches/serf-comment-style-fix.patch,
gnu/packages/patches/serf-deflate-buckets-test-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/web.scm (serf): Update to 1.3.9.
[source]: Remove patches.
 2017-04-27 17:58:43 +02:00
Marius Bakke decb4c26fa
gnu: serf: Disable expired SSL tests. 
Fixes <https://bugs.gnu.org/26671>.

* gnu/packages/web.scm (serf)[arguments]<#:phases>: Add 'disable-broken-tests'.
 2017-04-27 17:58:43 +02:00
Marius Bakke 0d29f5aac5
gnu: kodi: Update to 18.0_alpha-3-749c61e. 
* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-3-749c61e.
 2017-04-27 17:58:43 +02:00
Tobias Geerinckx-Rice 6373cddf42
gnu: tor: Update to 0.3.0.6. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.6.
 2017-04-27 13:00:45 +02:00
Tobias Geerinckx-Rice baca533370
gnu: simple-scan: Update to 3.24.1. 
* gnu/packages/gnome.scm (simple-scan): Update to 3.24.1.
 2017-04-27 09:37:32 +02:00
Arun Isaac d39a84e80c
gnu: Add mdbtools. 
* gnu/packages/databases.scm (mdbtools): New variable.
 2017-04-27 10:15:51 +05:30
Leo Famulari 2018eea07b
Merge branch 'staging' 2017-04-27 00:33:06 -04:00
Efraim Flashner be58ffa4aa
gnu: owncloud-client: Update to 2.3.1. 
* gnu/packages/sync.scm (owncloud-client): Update to 2.3.1.
[arguments]: Enable more tests.
 2017-04-26 22:04:01 +03:00
Vasile Dumitrascu c9ba67a5f2
gnu: synergy: Update to 1.8.8. 
* gnu/packages/synergy.scm (synergy): Update to 1.8.8.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-04-27 00:03:20 +05:30
Petter b63106089a
gnu: Add Xfce Notification Daemon. 
* gnu/packages/xfce.scm (xfce4-notifyd): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-04-26 16:32:24 +02:00
Danny Milosavljevic 2766f9e84f
gnu: Add volk. 
Fixes <http://bugs.gnu.org/26614>.

* gnu/packages/engineering.scm (volk): New variable.
 2017-04-26 15:59:09 +02:00
Ricardo Wurmus fadae857b7
gnu: nss-pam-ldapd: Add Kerberos support. 
* gnu/packages/openldap.scm (nss-pam-ldapd)[inputs]: Add mit-krb5.
 2017-04-26 13:10:00 +02:00
Ricardo Wurmus 289a89801a
gnu: nss-pam-ldapd: Look for nslcd.conf in global /etc/ directory. 
* gnu/packages/openldap.scm (nss-pam-ldapd)[arguments]: Set
"--with-ldap-conf-file" to look for global configuration file; add build phase
to install example configuration file in the package output directory.
 2017-04-26 13:09:13 +02:00
Mathieu Othacehe efba832751
gnu: ethtool: Update to 4.10. 
* gnu/packages/networking.scm (ethtool): Update to 4.10.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-04-26 11:42:16 +02:00
Marius Bakke ce09f04ea0
gnu: ceph: Update to 12.0.2. 
* gnu/packages/storage.scm (ceph): Update to 12.0.2.
[arguments]<#:phases>: Disable new test.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust.
 2017-04-26 11:39:33 +02:00
Marius Bakke 011b858b94
gnu: vte-ng: Update to 0.48.2.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.2.a.
[native-inputs]: Change GPERF-3.0 to GPERF.
 2017-04-26 11:39:31 +02:00
Efraim Flashner b27aacbfe2
gnu: Add gcompris-qt. 
* gnu/packages/education.scm (gcompris-qt): New variable.
 2017-04-26 12:04:26 +03:00
Efraim Flashner 4ad70ad8de
gnu: qtkeychain: Update to 0.8.0. 
* gnu/packages/qt.scm (qtkeychain): Update to 0.8.0.
 2017-04-26 09:42:13 +03:00
Efraim Flashner cd48a54902
gnu: fuse: Patch conflicting headers with the kernel. 
* gnu/packages/linux.scm (fuse)[source]: Add patch.
* gnu/packages/patches/fuse-overlapping-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-04-26 08:45:24 +03:00
Christopher Allan Webber d26ae96c3d
gnu: Add guile-sjson. 
* gnu/packages/guile.scm (guile-sjson): Add guile-sjson.
 2017-04-25 22:44:52 -05:00
Catonano 623fb4d162
gnu: Add freexl. 
* gnu/packages/xml.scm (freexl): New variable.
 2017-04-25 22:15:34 +02:00
Thomas Danckaert b8ebbefee2
gnu: duplicity: Update to 0.7.12. 
* gnu/packages/backup.scm (duplicity): Update to 0.7.12.
 2017-04-25 21:04:04 +02:00
Arun Isaac b5f57f60d5
Update name on email address for Mathieu Othacehe. 2017-04-26 00:11:17 +05:30
Leo Famulari 39d2d9a7ab
Merge branch 'master' into staging 2017-04-25 14:27:03 -04:00
Mathieu Othacehe c2bae4a219
gnu: cmst: Update to 2017.03.18. 
* gnu/packages/connman.scm (cmst): Update to 2017.03.18.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-04-25 23:33:08 +05:30
Ricardo Wurmus 31c374e081
gnu: python-pysam: Disable tests. 
* gnu/packages/bioinformatics.scm (python-pysam): Disable tests.
 2017-04-25 14:05:59 +02:00
Efraim Flashner 43ba5dd4eb
gnu: mpv: Update to 0.25.0. 
* gnu/packages/video.scm (mpv): Update to 0.25.0.
[arguments]: Add explicit configure-flags to enable cdda, dvdread and dvdnav.
 2017-04-24 22:38:14 +03:00
Mathieu Othacehe a2a15f6b21
gnu: speedtest-cli: Update to 1.0.5. 
* gnu/packages/networking.scm (speedtest-cli): Update to 1.0.5.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-04-24 21:25:14 +03:00
Ricardo Wurmus b2955e224e
gnu: python-pysam: Fix tests, again. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nosetests
explicitly with a single process.
 2017-04-24 18:46:28 +02:00
Efraim Flashner c136240efc
gnu: diamond: Enable building on all architectures. 
* gnu/packages/bioinformatics.scm (diamond)[supported-systems]: Remove
field.
 2017-04-24 19:30:10 +03:00
Efraim Flashner f0ef7b47d3
gnu: libevent: Disable regress tests. 
* gnu/packages/libevent.scm (libevent)[arguments]: Disable the 'regress'
tests.
 2017-04-24 19:30:02 +03:00
Kei Kebreau 0611abff32
gnu: wmfire: Update source code for new GDK versions. 
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnustep.scm (wmfire)[source]: Add patch.
 2017-04-24 11:23:31 -04:00
Efraim Flashner 094f4b53af
gnu: unionfs-fuse: Enable tests. 
* gnu/packages/linux.scm (unionfs-fuse)[arguments]: Replace 'check phase.
[native-inputs]: Add python, python-pytest.
 2017-04-24 12:11:55 +03:00
Efraim Flashner 2f861edf5c
gnu: unionfs-fuse: Update to 2.0. 
* gnu/packages/linux.scm (unionfs-fuse): Update to 2.0.
[home-page]: Update to Github page.
 2017-04-24 12:10:32 +03:00
Efraim Flashner 092b7b3e69
gnu: wiredtiger: Enable building on aarch64-linux. 
* gnu/packages/databases.scm (wiredtiger)[supported-systems]: Add
aarch64-linux to supported-systems.
 2017-04-24 11:35:43 +03:00
Efraim Flashner 0aa872eadf
gnu: reptyr: Remove aarch64 from supported systems. 
* gnu/packages/screen.scm (reptyr)[supported-systems]: Remove
aarch64-linux from supported-systems.
 2017-04-24 11:35:39 +03:00
Efraim Flashner 8df1ee3f33
gnu: sdl-gfx: Enable building on all architectures. 
* gnu/packages/sdl.scm (sdl-gfx)[arguments]: On non-Intel architectures
disable mmx processor instructions.
[supported-systems]: Remove field.
 2017-04-24 11:35:35 +03:00
Efraim Flashner b9af056408
gnu: libsmpeg: Set source file-name. 
* gnu/packages/video.scm (libsmpeg)[source]: Add file-name field.
 2017-04-24 10:30:21 +03:00
Leo Famulari 43acfcb2c7
libcroco: Fix CVE-2017-{7960,7961}. 
* gnu/packages/gnome.scm (libcroco)[replacement]: New field.
(libcroco/fixed): New variable.
* gnu/packages/patches/libcroco-CVE-2017-7960.patch,
gnu/packages/patches/libcroco-CVE-2017-7961.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2017-04-24 01:10:23 -04:00
Marius Bakke 8030679397
gnu: xorg-server@1.19.3: Correct hash. 
This hash got reset back to 1.19.2 when 1f49cd546e was merged (1524851f58).

* gnu/packages/xorg.scm (xorg-server-1.19.3)[source]: Update sha256 checksum.
 2017-04-24 00:55:28 +02:00
Vasile Dumitrascu 638787307e
gnu: Add emacs-google-maps. 
* gnu/packages/emacs.scm (emacs-google-maps): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-04-23 16:52:06 -04:00
Ricardo Wurmus a71d769d1e
gnu: r-minimal: Update to 3.4.0. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.0.
[arguments]: Set timezone to UTC+1 in "set-timezone" phase to avoid regression
test failure.
 2017-04-23 22:48:19 +02:00
Ricardo Wurmus d28fa5cc70
gnu: Add font-linuxlibertine. 
* gnu/packages/fonts.scm (font-linuxlibertine): New variable.
 2017-04-23 22:48:19 +02:00
Efraim Flashner f3bd17281a
gnu: obs: Mark as supported only on Intel systems. 
* gnu/packages/video.scm (obs)[supported-systems]: New field.
[arguments]: Remove armhf and mips specific substitutions.
 2017-04-23 22:16:46 +03:00
Marius Bakke 769df80ded
gnu: nss: Further increase test timeouts on armhf. 
* gnu/packages/gnuzilla.scm (nss)[arguments]<#:phases>: Add a substitution
when target platform is armhf.
 2017-04-23 11:34:45 +02:00
Ludovic Courtès fd6ec6bd99
gnu: coreutils@8.27: Do not apply 'coreutils-cut-huge-range-test.patch'. 
This patch is not needed in 8.27.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/base.scm (coreutils-8.27)[arguments]: New field.
 2017-04-23 01:24:57 +02:00
Daniel Pimentel b59af0c0ce
gnu: Add aspell-dict-pt-br. 
* gnu/packages/aspell.scm (aspell-dict-pt-br): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-04-23 01:24:42 +02:00
Amirouche 946742e3e5
gnu: guile-bytestructures: Update to 91d042e 
* gnu/packages/guile.scm (guile-bytestructures): Update to 91d042e.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-04-23 01:00:39 +02:00
Leo Famulari 1524851f58
Merge branch 'master' into staging 2017-04-22 18:27:12 -04:00
Ludovic Courtès ed9fb46b16
gnu: emacs-guix: Adjust to both 2.2 and 2.0. 
* gnu/packages/emacs.scm (emacs-guix)[arguments]: In #:configure-flags,
use 'find-files' to determine the --with-guix-site-dir argument.
 2017-04-23 00:03:17 +02:00
Ludovic Courtès ab2419e56a
gnu: guix: Honor the effective Guile version. 
* gnu/packages/package-management.scm (guix-0.12.0)[arguments]: In
'wrap-program' phase, use the effective Guile version rather than "2.0".
Add #:modules argument.
 2017-04-23 00:03:17 +02:00
Ludovic Courtès 38f10b0c4e
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 25a4929.
 2017-04-23 00:03:17 +02:00
Ricardo Wurmus 3b74b7a283
gnu: r-caret: Update to 6.0-76. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-76.
[propagated-inputs]: Add r-lattice and r-nlme.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus 96071a6db2
gnu: r-lme4: Update to 1.1-13. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-13.
[propagated-inputs]: Add r-lattice and r-matrix.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus 0d5bc9382a
gnu: r-quantreg: Update to 5.33. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.33.
[propagated-inputs]: Add r-matrix.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus f1a313dfde
gnu: r-compquadform: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-compquadform): Update to 1.4.3.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus 50d0b2c158
gnu: r-zoo: Update to 1.8-0. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 1c21e2cf17
gnu: r-matrixstats: Update to 0.52.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.2.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus c9d200e3af
gnu: r-r-rsp: Update to 0.41.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.41.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 96338a91d5
gnu: r-rtsne: Update to 0.13. 
* gnu/packages/statistics.scm (r-rtsne): Update to 0.13.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 78a237f6b6
gnu: r-rcpparmadillo: Update to 0.7.800.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.800.2.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 050d41ca87
gnu: r-memoise: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-memoise): Update to 1.1.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus aa745eb61f
gnu: r-markdown: Update to 0.8. 
* gnu/packages/statistics.scm (r-markdown): Update to 0.8.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus 958d0ee485
gnu: r-assertthat: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus 2219e691bb
gnu: r-rpart: Update to 4.1-11. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-11.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus b3360e09a7
gnu: r-mass: Update to 7.3-47. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-47.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 4d76947e50
gnu: r-boot: Update to 1.3-19. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-19.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 5ece8321af
gnu: r-curl: Update to 2.5. 
* gnu/packages/web.scm (r-curl): Update to 2.5.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 1a84edeb0b
gnu: r-seqminer: Update to 5.9. 
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 5.9.
 2017-04-22 23:30:31 +02:00
Ricardo Wurmus f8fe0e9db7
gnu: Add nss-pam-ldapd. 
* gnu/packages/openldap.scm (nss-pam-ldapd): New variable.
 2017-04-22 23:10:49 +02:00
Manolis Ragkousis cc4faa35f8
gnu: Add the Hurd. 
* gnu/packages/hurd.scm (hurd): New variable.
* gnu/packages/patches/hurd-fix-eth-multiplexer-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-04-22 23:01:30 +03:00
Manolis Ragkousis b005a37ac2
gnu: hurd: Add hurd-source-url procedure. 
* gnu/packages/hurd.scm (hurd-source-url): New procedure.
  (hurd-headers)[source]: Adjust accordingly.
 2017-04-22 23:01:24 +03:00
Tobias Geerinckx-Rice 10b91ccaaa
gnu: weechat: Update to 1.7.1. 
* gnu/packages/irc.scm (weechat): Update to 1.7.1.
[source, home-page]: Use HTTPS.
 2017-04-22 20:35:50 +02:00
Tobias Geerinckx-Rice d65db1d55d
gnu: weechat: Mention ‘IRC’. 
* gnu/packages/irc.scm (weechat)[description]: Mention the search term
‘IRC’, split into paragraphs, and other small tweaks.
 2017-04-22 20:35:50 +02:00
Kei Kebreau a7086b154f
gnu: hyperrogue: Update to 9.4g. 
* gnu/packages/games.scm (hyperrogue): Update to 9.4g.
 2017-04-22 13:57:55 -04:00
Kei Kebreau 7d873e0c26
gnu: gnuplot: Update to 5.0.6. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.6.
 2017-04-22 13:33:09 -04:00
Marius Bakke 611924eb87
gnu: xf86-video-nouveau: Update to 1.0.15. 
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.15.
[home-page]: Use HTTPS.
 2017-04-22 12:13:36 +02:00
Marius Bakke 1f8c4c53db
gnu: emacs: Update to 25.2. 
* gnu/packages/emacs.scm (emacs, emacs-minimal, emacs-no-x,
emacs-no-x-toolkit): Update to 25.2.
 2017-04-22 12:13:36 +02:00
Marius Bakke fa8a585e0f
gnu: xdg-utils: Update to 1.1.1. 
* gnu/packages/freedesktop.scm (xdg-utils): Update to 1.1.1.
[source]: Adjust file name.
[native-inputs]: Add DOCBOOK-XSL, DOCBOOK-XML-4.1.2, LIBXSLT, W3M and XMLTO.
[arguments]<#:phases>: Add 'patch-hardcoded-paths' and 'locate-catalog-files'
phases. New parameter.
[home-page]: Update to new home.
 2017-04-22 12:13:36 +02:00
Mark H Weaver 1efcd3d672
gnu: linux-libre: Update to 4.10.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.12.
(%linux-libre-hash): Update hash.
 2017-04-21 22:06:10 -04:00
Mark H Weaver 7b7770f205
gnu: linux-libre@4.9: Update to 4.9.24. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.24.
 2017-04-21 22:05:33 -04:00
Mark H Weaver bd5424d487
gnu: linux-libre@4.4: Update to 4.4.63. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.63.
 2017-04-21 22:04:48 -04:00
Ludovic Courtès befbaebf72
gnu: Add guile2.2-ssh. 
* gnu/packages/ssh.scm (guile2.2-ssh): New variable.
 2017-04-22 01:25:22 +02:00
Ricardo Wurmus 6ef94ecbaa
gnu: Add policycoreutils. 
* gnu/packages/selinux.scm (policycoreutils): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus 41da8dbe12
gnu: Add python-setools. 
* gnu/packages/selinux.scm (python-setools): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus 42c939a859
gnu: Add python-ipy. 
* gnu/packages/networking.scm (python-ipy): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus d7e2d273e1
gnu: Add python-sepolgen. 
* gnu/packages/selinux.scm (python-sepolgen): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus c837027d38
gnu: Add secilc. 
* gnu/packages/selinux.scm (secilc): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus 32be66011a
gnu: Add libsemanage. 
* gnu/packages/selinux.scm (libsemanage): New variable.
 2017-04-22 00:36:42 +02:00
Ricardo Wurmus 4724d7297f
gnu: Add libselinux. 
* gnu/packages/selinux.scm (libselinux): New variable.
 2017-04-22 00:36:42 +02:00
Ricardo Wurmus 66af08fb5a
gnu: Add checkpolicy. 
* gnu/packages/selinux.scm (checkpolicy): New variable.
 2017-04-22 00:36:42 +02:00
Ricardo Wurmus f269ad2536
gnu: Add libsepol. 
* gnu/packages/selinux.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2017-04-22 00:36:42 +02:00
Ricardo Wurmus ba85174035
gnu: ibus-libpinyin: Update to 1.9.0. 
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.9.0.
 2017-04-22 00:09:27 +02:00
Ricardo Wurmus 49d49b69f8
gnu: libpinyin: Adjust indentation. 
* gnu/packages/ibus.scm (libpinyin)[arguments]: Adjust indentation.
 2017-04-22 00:09:26 +02:00
Ricardo Wurmus 31e619385a
gnu: libpinyin: Update to 2.0.0. 
* gnu/packages/ibus.scm (libpinyin): Update to 2.0.0.
 2017-04-22 00:09:26 +02:00
Leo Famulari 04b9067991
gnu: Remove unused patches. 
* gnu/packages/patches/gcc-libiberty-printf-decl.patch,
gnu/packages/patches/grub-CVE-2015-8370.patch,
gnu/packages/patches/grub-freetype.patch,
gnu/packages/patches/grub-gets-undeclared.patch,
gnu/packages/patches/guile-arm-fixes.patch,
gnu/packages/patches/mplayer2-theora-fix.patch,
gnu/packages/patches/soprano-find-clucene.patch,
gnu/packages/patches/util-linux-CVE-2017-2616.patch,
gnu/packages/patches/xf86-video-intel-compat-api.patch,
gnu/packages/patches/xf86-video-intel-glibc-2.20.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-04-21 18:03:04 -04:00
Leo Famulari 0a3bed8819
gnu: libsodium: Update to 1.0.12. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.12.
 2017-04-21 16:37:37 -04:00
nee dd37a545f6
gnu: Add crawl. 
* gnu/packages/games.scm (crawl): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-04-22 01:47:46 +05:30
Corentin Bocquillon 9d62551216
gnu: Add libbson. 
* gnu/packages/serialization.scm (libbson): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-04-21 15:57:52 -04:00
Leo Famulari eeaea41236
gnu: mutt: Update to 1.8.2. 
* gnu/packages/mail.scm (mutt): Update to 1.8.2.
 2017-04-21 15:24:11 -04:00
Leo Famulari 324faf82c4
gnu: neomutt: Don't rewrite the source file-name. 
* gnu/packages/mail.scm (neomutt)[file-name]: Remove field.
 2017-04-21 15:21:27 -04:00
ng0 aa20b004d5
gnu: neomutt: Update to 20170421. 
* gnu/packages/mail.scm (neomutt): Update to 20170421.
[native-inputs]: Add 'gettext-minimal'.
[description]: Clarify the state of neomutt as it is now a microfork of mutt.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-04-21 15:21:26 -04:00
Clément Lassieur 6e75740f89
gnu: icecat: Fix GTK 3 file chooser crash. 
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add a 'wrap-program' phase to
set XDG_DATA_DIRS.
 2017-04-21 21:05:28 +02:00
nee 4ee81d3794
gnu: Add mcomix. 
* gnu/packages/image-viewers.scm (mcomix): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-04-21 23:21:48 +05:30
Andy Wingo 031e6087c4
gnu: guile: Update to 2.2.2. 
* gnu/packages/guile.scm (guile-2.2): Update to 2.2.2.
 2017-04-21 16:58:13 +02:00
Marius Bakke 0802f3a034
gnu: libsamplerate: Correct license after 0.1.9 update. 
This is a followup to e1f68c9668.

* gnu/packages/pulseaudio.scm (libsamplerate)[license]: Change GPL2+ to BSD-2.
 2017-04-21 16:10:12 +02:00
Marius Bakke 1aa78816f9
gnu: imlib2: Update to 1.4.10. 
* gnu/packages/image.scm (imlib2): Update to 1.4.10.
 2017-04-21 15:36:37 +02:00
Marius Bakke b5ceea9f0d
gnu: sdl-gfx: Update to 2.0.26. 
* gnu/packages/sdl.scm (sdl-gfx): Update to 2.0.26.
 2017-04-21 15:36:37 +02:00
Marius Bakke 80420acb5e
gnu: portaudio: Update to 190600.20161030. 
* gnu/packages/audio.scm (portaudio): Update to 190600.20161030.
* gnu/packages/patches/portaudio-audacity-compat.patch: Adjust line endings.
 2017-04-21 15:36:37 +02:00
Marius Bakke eb3574fb7d
gnu: soxr: Update to 0.1.2. 
* gnu/packages/audio.scm (soxr): Update to 0.1.2.
 2017-04-21 15:36:37 +02:00
Marius Bakke 833df99d62
gnu: python-pyopenssl: Update to 17.0.0. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.0.0.
[native-inputs]: Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Adjust.
 2017-04-21 15:36:36 +02:00
Ben Woodcroft a7d12a9e71
gnu: proteinortho: Update to 5.16. 
* gnu/packages/bioinformatics.scm (proteinortho): Update to 5.16.
 2017-04-21 23:03:56 +10:00
Ben Woodcroft 37199768e8
gnu: diamond: Update to 0.8.38. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.38.
 2017-04-21 23:03:55 +10:00
Tobias Geerinckx-Rice 8a6f168c48
gnu: miniupnpc: Use @dfn mark-up. 
gnu/packages/upnp.scm (miniupnpc)[description]: Use @dfn.
 2017-04-21 14:46:49 +02:00
Tobias Geerinckx-Rice 05b1feb92a
gnu: miniupnpc: Update to 2.0.20170421. 
gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20170421.
 2017-04-21 14:46:15 +02:00
Tobias Geerinckx-Rice ef27b4345f
gnu: fortify-headers: Use @code mark-up. 
* gnu/packages/suckless.scm (fortify-headers)[description]: Use @code.
 2017-04-21 12:32:54 +02:00
Tobias Geerinckx-Rice fea8b72989
gnu: Use HTTPS on 2f30.org. 
* gnu/packages/suckless.scm (spoon, xbattmon, wificurse, skroll, sbm)
(prout, noice, fortify-headers, colors)[source, home-page]: Use HTTPS.
(human)[home-page]: Likewise.
* gnu/packages/version-control.scm (stagit)[source, home-page]: Likewise.
 2017-04-21 12:32:53 +02:00
Tobias Geerinckx-Rice 9006f8bc59
gnu: version-control: Use HTTPS where possible. 
* gnu/packages/version-control.scm (git)[home-page]: Use HTTPS.
(cvs)[source, home-page]: Likewise.
 2017-04-21 12:32:53 +02:00
Tobias Geerinckx-Rice 79990ce31f
gnu: git-crypt: Double-space Texinfo mark-up. 
* gnu/packages/version-control.scm (git-crypt)[description]: Use two spaces
where one would suffice.
 2017-04-21 12:32:53 +02:00
Tobias Geerinckx-Rice 0aea268ae1
gnu: diffstat: Use @command mark-up. 
* gnu/packages/version-control.scm (diffstat)[synopsis, description]:
Use @command.
 2017-04-21 12:32:53 +02:00
Tobias Geerinckx-Rice 86bc52f9ba
gnu: diffstat: Update to 1.61. 
* gnu/packages/version-control.scm (diffstat): Update to 1.61.
[source]: Add http://invisible-mirror.net mirror.
 2017-04-21 12:32:52 +02:00
Tobias Geerinckx-Rice 35ad6b2e95
gnu: neon: Use @enumerate mark-up. 
* gnu/packages/version-control.scm (neon)[description]: Use @enumerate.
 2017-04-21 12:32:52 +02:00
Tobias Geerinckx-Rice 51eb4df69a
gnu: neon: Update to 0.30.2. 
* gnu/packages/version-control.scm (neon): Update to 0.30.2.
 2017-04-21 12:32:24 +02:00