296da6e624
gnu: r-seurat: Update to 3.0.0.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
2019-04-19 15:38:47 +02:00
9b86fea05f
gnu: Add r-sctransform.
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* gnu/packages/cran.scm (r-sctransform): New variable.
2019-04-19 15:38:46 +02:00
7015ae6881
gnu: r-urltools: Update to 1.7.3.
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* gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
2019-04-19 14:43:34 +02:00
f0826fec46
gnu: r-rdpack: Update to 0.11-0.
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* gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
2019-04-19 14:43:29 +02:00
5ac82ee33b
gnu: r-sdmtools: Update to 1.1-221.1.
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* gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1.
2019-04-19 14:43:23 +02:00
3d60c80713
gnu: r-hardyweinberg: Update to 1.6.2.
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* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2.
2019-04-19 14:43:17 +02:00
8e79d820d0
gnu: r-clipr: Update to 0.6.0.
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* gnu/packages/cran.scm (r-clipr): Update to 0.6.0.
2019-04-19 14:43:10 +02:00
664a6bc1a6
gnu: r-caret: Update to 6.0-83.
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* gnu/packages/statistics.scm (r-caret): Update to 6.0-83.
2019-04-19 14:42:51 +02:00
f00067dbfb
gnu: klick: Fix build with latest scons.
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* gnu/packages/music.scm (klick)[arguments]: Patch "SConstruct" file to make
it compatible with the current version of scons.
2019-04-19 14:24:04 +02:00
35259437a7
gnu: perl-datetime-timezone: Fix missing timezone data.
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I noticed this when using Sqitch, on systems without /usr/share/zoneinfo,
actions like deploy fail.
* gnu/packages/perl.scm (perl-datetime-timezone)[arguments]: Add 'patch-tzdata
phase to replace /usr/share/zoneinfo with a reference to the tzdata package.
[inputs]: Add the tzdata package.
2019-04-19 11:42:30 +01:00
f32164abd3
gnu: python2-send2trash: Don't inherit properties from python-send2trash.
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This is a follow-up to commit 20b3fde776
2019-04-19 02:29:43 +02:00
20b3fde776
gnu: python-send2trash: Really delay Python2 variant.
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This is a follow-up to commit 4782a06f45
2019-04-19 01:57:34 +02:00
cbeb891344
gnu: gpgme: Update to 1.13.0.
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* gnu/packages/gnupg.scm (gpgme): Update to 1.13.0.
[source](patches): Remove.
2019-04-19 01:48:07 +02:00
4782a06f45
gnu: python-send2trash: Properly delay python2 variant.
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* gnu/packages/python-xyz.scm (python2-send2trash)[properties]: Move from here ...
(python-send2trash)[properties]: ... to here.
2019-04-19 01:48:07 +02:00
c105e50903
gnu: python-service-identity: Update to 18.1.0.
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* gnu/packages/python-crypto.scm (python-service-identity): Update to 18.1.0.
2019-04-19 01:48:07 +02:00
1adde06e4e
gnu: python-jsonschema: Update to 3.0.1.
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* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.0.1.
[arguments]: Adjust check phase for Twisted instead of nosetests.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-VCVERSIONER. Add
PYTHON-SETUPTOOLS-SCM and PYTHON-TWISTED.
[propagated-inputs]: Add PYTHON-ATTRS, PYTHON-PYRSISTENT and PYTHON-SIX.
(python2-jsonschema)[native-inputs, propagated-inputs]: Inherit.
2019-04-19 01:48:07 +02:00
ea43f0d581
gnu: Add python-pyrsistent.
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* gnu/packages/python-xyz.scm (python-pyrsistent, python2-pyrsistent): New
public variables.
2019-04-19 01:48:07 +02:00
52ca1c4abf
gnu: python-twisted: Update to 19.2.0.
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* gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.0.
[propagated-inputs]: Add PYTHON-PYHAMCREST.
2019-04-19 01:48:06 +02:00
919d80a0e0
gnu: python-automat: Update to 0.7.0.
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* gnu/packages/python-xyz.scm (python-automat): Update to 0.7.0.
2019-04-19 01:48:06 +02:00
bcfb8fac36
gnu: python-m2r: Update to 0.2.1.
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* gnu/packages/python-xyz.scm (python-m2r): Update to 0.2.1.
2019-04-19 01:48:06 +02:00
e95c983706
gnu: python-idna: Update to 2.8.
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* gnu/packages/python-xyz.scm (python-idna): Update to 2.8.
2019-04-19 01:48:06 +02:00
431a0d26c8
gnu: python-hyperlink: Update to 19.0.0.
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* gnu/packages/python-web.scm (python-hyperlink): Update to 19.0.0.
2019-04-19 01:48:06 +02:00
8142eadd40
gnu: python-zope-interface: Update to 4.6.0.
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* gnu/packages/python-web.scm (python-zope-interface): Update to 4.6.0.
2019-04-19 01:48:06 +02:00
e6d782621a
gnu: xmlsec: Update to 1.2.28.
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* gnu/packages/xml.scm (xmlsec): Update to 1.2.28.
2019-04-19 01:48:06 +02:00
bd5b6ce0d7
gnu: gnuastro: Update to 0.9.
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* gnu/packages/astronomy.scm (gnuastro): Update to 0.9.
[native-inputs]: Add libtool.
2019-04-18 17:00:46 +03:00
5d450aba1f
gnu: nano: Update to 4.1.
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* gnu/packages/nano.scm (nano): Update to 4.1.
2019-04-18 16:59:28 +03:00
fd6d2fd871
gnu: xpra: Update to 2.5.1.
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* gnu/packages/xorg.scm (xpra): Update to 2.5.1.
2019-04-18 09:25:38 +02:00
2ad0310615
gnu: rclone: Update to 1.47.0.
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* gnu/packages/sync.scm (rclone): Update to 1.47.0.
2019-04-17 16:25:57 +02:00
afcd4438f8
gnu: console-setup: Update to 1.191.
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* gnu/packages/xorg.scm (console-setup): Update to 1.191.
2019-04-17 15:54:54 +02:00
15dca289b8
gnu: guix: Update to b8b1e4d.
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* gnu/packages/package-management.scm (guix): Update to b8b1e4d
2019-04-17 11:53:54 +02:00
a0e16bec37
gnu: guix: Don't pass '--with-libgcrypt-prefix'.
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* gnu/packages/package-management.scm (guix)[arguments]: Remove
"--with-libgcrypt-prefix" from the configure flags.
2019-04-17 11:53:53 +02:00
a0158c26e2
gnu: awesome: Update home page.
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* gnu/packages/wm.scm (awesome)[home-page]: Update.
2019-04-17 11:53:53 +02:00
38dd8b6058
gnu: gtkwave: Update to 3.3.100.
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* gnu/packages/fpga.scm (gtkwave): Update to 3.3.100.
2019-04-17 06:15:36 +02:00
9043c1c561
gnu: qsynth: Update to 0.5.6.
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* gnu/packages/audio.scm (qsynth): Update to 0.5.6.
2019-04-17 06:15:25 +02:00
11f38e9052
gnu: qjackctl: Update to 0.5.7.
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* gnu/packages/audio.scm (qjackctl): Update to 0.5.7.
2019-04-17 06:15:17 +02:00
9a8aac1689
gnu: csound: Update to 6.12.2.
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* gnu/packages/audio.scm (csound): Update to 6.12.2.
2019-04-17 06:15:09 +02:00
315d7dda35
gnu: gtkwave: Don't use NAME in source URI.
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* gnu/packages/fpga.scm (gtkwave)[source]: Hard-code NAME.
2019-04-17 06:12:48 +02:00
9b15ef9350
gnu: calf: Update to 0.90.2.
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* gnu/packages/audio.scm (calf): Update to 0.90.2.
2019-04-17 05:56:54 +02:00
067826abe3
gnu: the-legend-of-edgar: Update to 1.31.
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* gnu/packages/games.scm (the-legend-of-edgar): Update to 1.31.
[inputs]: Use SDL 2 union.
[arguments]: Adjust accordingly.
2019-04-17 03:23:37 +02:00
564df7e584
gnu: dungeon-crawl-stone-soup: Update to 0.23.2.
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* gnu/packages/games.scm (dungeon-crawl-stone-soup): Update to 0.23.2.
2019-04-17 03:23:37 +02:00
18061de9e1
gnu: minetest: Update to 5.0.1.
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* gnu/packages/games.scm (minetest): Update to 5.0.1.
games
minetest
2019-04-17 03:22:57 +02:00
b24ada5110
gnu: snd: Update to 19.3.
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* gnu/packages/audio.scm (snd): Update to 19.3.
2019-04-17 03:21:08 +02:00
0525864bdc
gnu: bennu-game-development-modules: Fix typos.
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* gnu/packages/game-development.scm (bennu-game-development-modules)
[synopsis, description]: Fix ‘developement’ spelling.
2019-04-17 03:21:08 +02:00
881a3521f6
gnu: emacs-irony-mode: Fix typo in description.
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* gnu/packages/emacs-xyz.scm (emacs-irony-mode)[description]:
Re-spell ‘resistent’.
2019-04-17 03:21:08 +02:00
4bee557d43
gnu: rubberband: Update to 1.8.2.
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* gnu/packages/audio.scm (rubberband): Update to 1.8.2.
[arguments]: Add ‘skip-jni-installation’ phase.
2019-04-17 03:21:08 +02:00
e28ff04108
gnu: webkitgtk: Fix build on i686.
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Fixes <https://bugs.gnu.org/35232 >.
* gnu/packages/patches/webkitgtk-sse2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/webkit.scm (webkitgtk-2.24)[source](patches): New field.
2019-04-16 23:39:49 +02:00
dd3266ecde
gnu: epiphany: Don't use NAME in source URI.
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* gnu/packages/gnome.scm (epiphany)[source]: Hard-code NAME.
2019-04-16 22:40:04 +02:00
5b249625c1
gnu: eolie: Update to 0.9.60.
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* gnu/packages/gnome.scm (eolie): Update to 0.9.60.
2019-04-16 22:40:04 +02:00
0e84987f50
gnu: docker, docker-cli: Update to 18.09.5.
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* gnu/packages/docker.scm (%docker-version): Update to 18.09.5.
2019-04-16 22:40:04 +02:00
a1942cf094
gnu: avrdude: Use @acronym{} mark-up.
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* gnu/packages/flashing-tools.scm (avrdude)[description]: Use it.
2019-04-16 22:40:04 +02:00
Ricardo Wurmus