6569549dfa
gnu: python-paramiko: Update to 2.4.2 [security fixes].
...
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.4.2.
2018-09-21 13:18:42 +02:00
101ad242be
gnu: python-paramiko: Use HTTPS home page.
...
* gnu/packages/python-crypto.scm (python-paramiko)[home-page]: Use HTTPS.
2018-09-21 13:18:42 +02:00
a1d6610e84
gnu: python-rencode: Update to 1.0.5.
...
* gnu/packages/python.scm (python-rencode): Update to 1.0.5.
[arguments]: Add a 'delete-bogus-test' phase.
2018-09-21 13:18:42 +02:00
e36058634d
gnu: python-hdf4: Use INVOKE.
...
* gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-09-21 13:18:42 +02:00
6f05556ba7
gnu: s6: Update to 2.7.2.1.
...
* gnu/packages/skarnet.scm (s6): Update to 2.7.2.1.
2018-09-21 13:18:41 +02:00
174988fa05
gnu: perl-xml-compile: Update to 1.60.
...
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.60.
[propagated-inputs]: Add perl-carp, perl-scalar-list-utils, and
perl-types-serialiser.
2018-09-21 13:18:41 +02:00
1df40d3dbf
gnu: emacs-orgalist: Update to 1.9.
...
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.9.
2018-09-21 11:52:12 +02:00
3752b683dc
gnu: openscenegraph: Update to 3.6.3.
...
* gnu/packages/graphics.scm (openscenegraph): Update to 3.6.3.
[source]: Use GIT-FILE-NAME.
[inputs]: Remove unused pth and qtbase.
2018-09-21 10:25:33 +02:00
29ddbc5607
gnu: python-pydot: Update to 1.2.4.
...
* gnu/packages/graphviz.scm (python-pydot): Update to 1.2.4.
[arguments]: Run the test suite.
[native-inputs]: Add python-chardet.
2018-09-21 10:25:32 +02:00
1779aaa09a
Add 'GNU Guix' comment to all (gnu packages) headers.
...
* gnu/packages/debian.scm, gnu/packages/syndication.scm: Add comments.
2018-09-21 10:25:32 +02:00
4aa64e3a81
gnu: ubuntu-keyring: Update to 2018.09.18.1.
...
* gnu/packages/debian.scm (ubuntu-keyring): Update to 2018.09.18.1.
2018-09-21 10:25:32 +02:00
eeecbe09cc
gnu: perl-dbd-mysql: Update to 4.048.
...
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
2018-09-21 10:25:31 +02:00
e0b07ccc1a
gnu: rust: Work around mtime bug in rust build helpers.
...
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[fix-mtime-bug]:
Delete.
[reset-timestamps-after-changes]: Modify.
(rust-1.24): Don't delete "fix-mtime-bug" since now it doesn't ever
get created.
2018-09-21 01:35:00 +02:00
1bfaae25fa
gnu: rust@1.20.0: Fix tests.
...
* gnu/packages/rust.scm (rust-1.23)[arguments]<#:phases>
[patch-cargo-tests, ignore-glibc-2.27-incompatible-test,fix-mtime-bug]: Move
to...
(rust-1.20): ... here.
2018-09-21 01:31:10 +02:00
83e8b1d794
gnu: linux-libre: Update to 4.18.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.9.
(%linux-libre-hash): Update hash.
2018-09-20 18:04:56 -04:00
c57a2a12b1
gnu: linux-libre@4.14: Update to 4.14.71.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.71.
(%linux-libre-4.14-hash): Update hash.
2018-09-20 18:04:48 -04:00
41d6afb266
gnu: linux-libre@4.9: Update to 4.9.128.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.128.
2018-09-20 18:04:42 -04:00
c6ede267e6
gnu: linux-libre@4.4: Update to 4.4.157.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.157.
2018-09-20 18:04:35 -04:00
ea2364621a
gnu: qbittorrent: Update to 4.1.3.
...
* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.1.3.
[inputs]: Use python-wrapper instead of python.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-20 15:31:17 -04:00
f5c10a94ef
gnu: gprolog: Update to 1.4.5.
...
* gnu/packages/gprolog.scm (gprolog): Update to 1.4.5.
[source]: Add an alternate source URL.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-20 15:27:43 -04:00
89ee8a6edf
gnu: rsem: Update to 1.3.1.
...
* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1.
[source]: Fetch from git; remove patch; delete bundled samtools.
[arguments]: Pass make flags; adjust phases.
[inputs]: Remove ncurses and samtools-0.1; add htslib-1.3.
* gnu/packages/patches/rsem-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-20 17:55:26 +02:00
a235ea4f30
gnu: ghc-pandoc-citeproc: Update to 0.14.3.1.
...
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.14.3.1.
2018-09-20 17:20:07 +02:00
e30397dddb
gnu: ghc-xml-conduit: Update to 1.8.0.1.
...
* gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.8.0.1.
[inputs]: Add ghc-doctest.
2018-09-20 17:20:02 +02:00
391fc11f0e
gnu: python2-scikit-learn: Fix check phase.
...
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]:
Override check phase to disable broken tests and pass environment variables.
2018-09-20 15:56:59 +02:00
26358ac5ab
gnu: Add r-parmigene.
...
* gnu/packages/cran.scm (r-parmigene): New variable.
2018-09-20 15:56:30 +02:00
3e12df7d71
gnu: Add emacs-dired-sidebar.
...
* gnu/packages/emacs.scm (emacs-dired-sidebar): New public variable.
2018-09-20 13:29:29 +02:00
166b2c970e
gnu: eolie: Update home page.
...
* gnu/packages/gnome.scm (eolie)[home-page]: Set to wiki.gnome.org/Apps/Eolie.
2018-09-20 13:29:29 +02:00
9926b8f809
gnu: services: Add iptables service.
...
* gnu/services/networking.scm (<iptables-configuration>): New record type.
(iptables-service-type): New variable.
* gnu/tests/networking.scm (run-iptables-test): New procedure.
(%test-iptables): New variable.
* doc/guix.texi (Networking Services): Document it.
2018-09-20 13:09:55 +05:30
3e63a83c0f
gnu: u-boot: Use HTTPS home page.
...
* gnu/packages/bootloaders.scm (u-boot)[home-page]: Use HTTPS.
2018-09-20 04:50:34 +02:00
84c7fbfd6d
gnu: ccid: Update to 1.4.30.
...
* gnu/packages/security-token.scm (ccid): Update to 1.4.30.
2018-09-20 04:50:34 +02:00
4eb161962f
gnu: opusfile: Update to 0.11.
...
* gnu/packages/xiph.scm (opusfile): Update to 0.11.
2018-09-20 04:50:33 +02:00
e61c2991e4
Use INVOKE in (gnu packages xdisorg).
...
* gnu/packages/xdisorg.scm (scrot, unclutter, xautolock, nxbelld)
[arguments]: Use INVOKE.
2018-09-20 04:17:04 +02:00
2385ecb224
Use INVOKE in (gnu packages shells).
...
* gnu/packages/shells.scm (mksh)[arguments]: Use INVOKE...
(scsh)[arguments]: ...and also return #t from all phases.
2018-09-20 04:17:04 +02:00
9923d5a40f
gnu: Use INVOKE & return #t from Ruby package phases.
...
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from
all phases.
* gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute
INVOKE for SYSTEM*.
* gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate)
(ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins)
(ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure)
(ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard)
(ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers)
(ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer)
(ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery)
(ruby-rc4, ruby-concurrent)[arguments]: Likewise.
2018-09-20 04:17:04 +02:00
4f66ae2899
gnu: ruby-heredoc-unindent: Fix typo in description.
...
* gnu/packages/ruby.scm (ruby-heredoc-unindent)[description]: Fix typo.
2018-09-20 04:17:03 +02:00
7616d75fd6
Use INVOKE in (gnu packages telephony).
...
* gnu/packages/telephony.scm (libiax2, mumble)[arguments]: Use INVOKE.
2018-09-20 04:17:03 +02:00
e564d33ce8
gnu: gourmet: Use HTTPS home page.
...
* gnu/packages/nutrition.scm (gourmet)[home-page]: Use HTTPS.
2018-09-20 04:17:03 +02:00
29a000b602
gnu: sg3-utils: Update to 1.44.
...
* gnu/packages/scsi.scm (sg3-utils): Update to 1.44.
2018-09-20 04:17:02 +02:00
e266043e67
gnu: shotwell: Update to 0.28.4.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.28.4.
2018-09-19 17:31:49 -04:00
508d5c5fa8
gnu: OpenSC: Update to 0.19.0 [security fixes].
...
Fixes CVE-2018-{16391,16392,16393,16418,16419,16420,16421,16422,16423,16424,
16425,16426,16427}.
* gnu/packages/security-token.scm (opensc): Update to 0.19.0.
2018-09-19 15:08:00 -04:00
1d98b44ea6
gnu: sbcl-slynk: Fix the build.
...
* gnu/packages/lisp.scm (sbcl-slynk-boot0): Update to commit
cbf84c36c4eca8b032e3fd16177a7bc02df3ec4c.
[origin]<snippet>: Replace slynk/util references with the built system name
slynk-util. Remove compile-time invocations of slynk-require.
(sbcl-slynk-util): Inherit from sbcl-slynk-boot0.
[inputs]: Add sbcl-slynk-boot0.
[arguments]: Set an appropriate asd-file and asd-system-name.
(sbcl-slynk-arglists)[arguments]: Set an appropriate asdf-system-name.
(sbcl-slynk-fancy-inspector)[arguments]: Likewise.
(sbcl-slynk-package-fu)[arguments]: Likewise.
(sbcl-slynk-mrepl)[arguments]: Likewise.
(sbcl-slynk-trace-dialog)[arguments]: Likewise.
(sbcl-slynk-profiler)[arguments]: Likewise.
(sbcl-slynk-indentation)[arguments]: Likewise.
(sbcl-slynk-retro)[arguments]: Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19 18:25:28 +02:00
5f6908d664
build-system/asdf: Adopt asdf conventions.
...
The asdf documentation specifies that asdf:load-asd should be preferred to
calling load on a system definition file.
* guix/build/lisp-utils.scm (compile-system): Replace load with asdf:load-asd.
(system-dependencies): Likewise.
(test-system): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19 18:25:28 +02:00
e831a1668b
build-system/asdf: Use invoke.
...
* guix/build/lisp-utils.scm (lisp-eval-program): Replace system* and error
handling with invoke.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19 18:25:28 +02:00
29a3ffb446
build-system/asdf: Log lisp system invocations.
...
* guix/build/lisp-system.scm: (lisp-eval-program): Log the arguments to
system*.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19 18:25:28 +02:00
7b6b7cdcc5
build-system/asdf: Handle all asdf dependency specifications.
...
Add support for dependencies of the form (:version <name> <version>),
(:feature <feature> <dependency-specification>) and (:require <module-name>),
as defined by
<https://common-lisp.net/project/asdf/asdf.html#The-defsystem-grammar >.
* guix/build/lisp-utils.scm (normalize-dependency): New variable.
(make-asd-file)[dependencies]: Use it to generate dependencies with normalized
names.
[dependency-name]: New variable.
[registry]: Use it to flatten the normalized dependencies.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19 18:25:28 +02:00
241358dc94
services: networking: Remove unbound variable reference in 'stop'.
...
* gnu/services/base.scm (static-networking-shepherd-service): Remove
spurious ":" in 'stop' method inadvertently introduced in commit
c9436025a9
2018-09-19 18:25:28 +02:00
7fd3082522
services: udev: Simplify 'start' method.
...
* gnu/services/base.scm (udev-shepherd-service)[start](find): Remove.
(udev): Hardwire the eudev file name.
Use 'fork+exec-command' instead of 'primitive-fork' and 'exec-command'.
2018-09-19 18:25:27 +02:00
4d679255da
gnu: glm: Update to 0.9.9.2.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
2018-09-19 15:20:21 +02:00
f6ae59c2e0
gnu: feh: Update to 2.28.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.28.
2018-09-19 15:20:21 +02:00
f03c4ec649
gnu: arpack-ng: Update to 3.6.3.
...
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
2018-09-19 15:20:21 +02:00
Tobias Geerinckx-Rice