Commit Graph

48383 Commits

Author SHA1 Message Date
Pierre Neidhardt 3658db3fd7
gnu: Add string-case.
* gnu/packages/lisp.scm (cl-string-case, ecl-string-case, sbcl-string-case):
  New variables.
2019-10-07 13:48:23 +02:00
Pierre Neidhardt 6fdb5b7947
gnu: Add cl-fare-quasiquote-extras.
* gnu/packages/lisp.scm (cl-fare-quasiquote-extras): New variable.
2019-10-07 13:48:00 +02:00
Pierre Neidhardt 7b9cb9c01c
gnu: Add cl-fare-quasiquote-readtable.
* gnu/packages/lisp.scm (cl-fare-quasiquote-readtable): New variable.
2019-10-07 13:47:46 +02:00
Pierre Neidhardt 06e2da719e
gnu: Add fare-quasiquote-optima.
* gnu/packages/lisp.scm (cl-fare-quasiquote-optima,
  sbcl-fare-quasiquote-optima): New variables.
2019-10-07 13:46:55 +02:00
Pierre Neidhardt 7baaf7f358
gnu: Add cl-fare-quasiquote.
* gnu/packages/lisp.scm (cl-fare-quasiquote): New variable.
2019-10-07 13:46:36 +02:00
Pierre Neidhardt 85747bab82
gnu: sbcl-optima: Fix version number
* gnu/packages/lisp.scm (sbcl-optima)[version]: It's actually 1.0.
2019-10-07 13:45:53 +02:00
Vagrant Cascadian 7d82e92071
gnu: linux-libre: Update to 5.3.4.
* gnu/packages/linux (linux-libre-5.3-version): Update to 5.3.4.
  (deblob-scripts-5.3): Update to 5.3.4.
2019-10-07 01:55:46 -07:00
Ludovic Courtès 048d21a873
gnu: icedtea-7: Avoid massive rebuild.
Reported by Efraim Flashner.

* gnu/packages/java.scm (icedtea-7)[arguments]: Change 'lib-path'
definition in 'install-libjvm' to avoid the rebuilds that commit
1b6f99ea53 would otherwise entail.
2019-10-07 10:44:10 +02:00
Efraim Flashner 7b6a8e23b0
gnu: aria2: Update to 1.35.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.35.0.
[source]: Use new upstream uri. Remove patch.
* gnu/packages/patches/aria2-CVE-2019-3500.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-10-07 11:37:21 +03:00
Ludovic Courtès d3e22bcc11
gnu: icedtea-7: Support non-Intel systems.
This is a followup to 1b6f99ea53.

* gnu/packages/java.scm (icedtea-7)[arguments]: In 'install-libjvm'
phase, match armhf and aarch64.
[supported-systems]: New field.
2019-10-07 09:52:31 +02:00
Oleg Pykhalov 4261a9d162
gnu: emacs-mbsync: Update to 0.1.2-4.b62491c.
* gnu/packages/emacs-xyz.scm (emacs-mbsync): Update to 0.1.2-4.b62491c.
2019-10-07 10:24:36 +03:00
Brian Leung 4f2a3fbe88
gnu: emacs-evil-nerd-commenter: Update to 3.3.8.
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.3.8.
2019-10-07 08:20:50 +02:00
Brian Leung 3f68853557
gnu: emacs-evil-traces: Update to 0.0.1-2.1931e3e.
* gnu/packages/emacs-xyz.scm (emacs-evil-traces): Update to 0.0.1-2.1931e3e.
2019-10-07 05:15:55 +02:00
Brian Leung 47467ce75a
gnu: Add emacs-peg.
* gnu/packages/emacs-xyz.scm (emacs-peg): New variable.
2019-10-07 04:34:59 +02:00
Brian Leung b44271350b
gnu: emacs-deadgrep: Update to 0.8-2.3fc7ca1.
* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.8-2.3fc7ca1.
2019-10-07 01:43:37 +02:00
Ricardo Wurmus 326746e14c
gnu: r-variancepartition: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus eb796f53ef
gnu: r-mixomics: Update to 6.8.5.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 1c2e573302
gnu: r-regioner: Update to 1.16.5.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 07d0645b6b
gnu: r-backports: Update to 1.1.5.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.5.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus f817005bfe
gnu: r-gargle: Update to 0.4.0.
* gnu/packages/cran.scm (r-gargle): Update to 0.4.0.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 9b112f4030
gnu: r-rcppparallel: Update to 4.4.4.
* gnu/packages/cran.scm (r-rcppparallel): Update to 4.4.4.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 770321180f
gnu: r-hdf5r: Update to 1.3.0.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.0.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 2e6ccd6c2d
gnu: r-promises: Update to 1.1.0.
* gnu/packages/cran.scm (r-promises): Update to 1.1.0.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus ab99236eba
gnu: r-later: Update to 1.0.0.
* gnu/packages/cran.scm (r-later): Update to 1.0.0.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus b7e7c320a2
gnu: r-maptools: Update to 0.9-8.
* gnu/packages/cran.scm (r-maptools): Update to 0.9-8.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus ff74344597
gnu: r-htmlwidgets: Update to 1.5.
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 82acc94fbf
gnu: r-htmltools: Update to 0.4.0.
* gnu/packages/cran.scm (r-htmltools): Update to 0.4.0.
[arguments]: Remove field.
[propagated-inputs]: Add r-rlang.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 33651044c6
gnu: r-seurat: Update to 3.1.1.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.1.
[propagated-inputs]: Add r-httr.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 94638cbe77
gnu: r-rsamtools: Update to 2.0.2.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.2.
2019-10-06 23:08:47 +02:00
Ricardo Wurmus 122c1b3ce7
gnu: r-biomart: Update to 2.40.5.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.5.
2019-10-06 23:08:46 +02:00
Brian Leung d050fdf4c6
gnu: emacs-helm-ag: Fix version.
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Fix version.
2019-10-06 22:08:27 +02:00
Brian Leung cb2197508a
gnu: Add emacs-helm-org.
* gnu/packages/emacs-xyz.scm (emacs-helm-org): New variable.
2019-10-06 22:08:27 +02:00
Brian Leung 45d04b2a7d
gnu: emacs-helm: Update to 3.5.0.
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.5.0.
2019-10-06 22:08:27 +02:00
Ricardo Wurmus 4722330d68
gnu: nss-pam-ldapd: Update to 0.9.11.
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.11.
[inputs]: Replace python-2 with python.
2019-10-06 22:07:07 +02:00
Ricardo Wurmus f58702465d
gnu: Add mloop.
* gnu/packages/music.scm (mloop): New variable.
2019-10-06 22:01:01 +02:00
Ricardo Wurmus 4b94e63db6
gnu: guile-studio: Update to 0-2.4d63f3d.
* gnu/packages/guile-xyz.scm (guile-studio): Update to 0-2.4d63f3d.
2019-10-06 22:01:01 +02:00
Ricardo Wurmus 1b6f99ea53
gnu: icedtea-7: Fix build on i686-linux.
* gnu/packages/java.scm (icedtea-7)[arguments]: Use "i386" lib directory when
the system is "i686-linux".
2019-10-06 22:01:01 +02:00
Ricardo Wurmus fc37b4afb2
gnu: jamvm-1-bootstrap: Fix segfault in bootstrap JVM.
* gnu/packages/java.scm (jamvm-1-bootstrap)[arguments]: Add configure flags:
--disable-int-caching, --enable-runtime-reloc-checks, and --enable-ffi.
[inputs]: Add libffi.
2019-10-06 22:01:01 +02:00
Brian Leung ff810d21a5
gnu: emacs-hackernews: Update to 0.5.0-2.2362d7b.
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-2.2362d7b.
2019-10-06 20:40:23 +02:00
Brian Leung 9049f28f57
gnu: emacs-undo-propose-el: Update to 3.0.0-3.f80baee.
* gnu/packages/emacs-xyz.scm (emacs-undo-propose-el): Update to 3.0.0-3.f80baee.
2019-10-06 20:18:39 +02:00
Brian Leung 1017ba7dd5
gnu: emacs-evil-mc: Update to 0.0.3-2.1cabb86.
* gnu/packages/emacs-xyz.scm (emacs-evil-mc): Update to 0.0.3-2.1cabb86.
2019-10-06 19:59:05 +02:00
Pierre Neidhardt cec23736d3
gnu: Add cl-goject-introspection.
* gnu/packages/lisp.scm (cl-goject-introspection,
  sbcl-cl-gobject-introspection): New variables.
2019-10-06 19:34:13 +02:00
Ludovic Courtès 63b0ce391f
services: shepherd: Compile service files.
This reduces resident memory for PID 1 from 29.8MiB to 28.7MiB right
after boot on a bare-bones system (x86_64-linux).

* gnu/services/shepherd.scm (scm->go): New procedure.
(shepherd-configuration-file)[config]: Call it and use 'load-compiled'
instead of 'primitive-load'.
2019-10-06 14:45:35 +02:00
Ludovic Courtès 38b1ea0434
services: udev: Explicitly depend on (gnu build linux-boot).
* gnu/services/base.scm (udev-shepherd-service): Wrap 'start' method in
'with-imported-modules'.
2019-10-06 14:45:35 +02:00
Ludovic Courtès 62c2217570
services: agetty: Explicitly depend on (gnu build linux-boot).
* gnu/services/base.scm (default-serial-port): Wrap in
'with-imported-modules'.
2019-10-06 14:45:35 +02:00
Ludovic Courtès 1994422752
system: Add 'mount' and 'umount' to '%setuid-programs'.
Fixes <https://bugs.gnu.org/37569>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.

* gnu/system.scm (%setuid-programs): Add "mount" and "umount" from
util-linux.
2019-10-06 14:45:35 +02:00
Guillaume Le Vaillant 5a65fede0b
gnu: Add cl-random-forest.
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest,
  ecl-cl-random-forest): New variables.
2019-10-06 14:37:54 +02:00
Guillaume Le Vaillant 7a15aab836
gnu: Add cl-online-learning.
* gnu/packages/machine-learning.scm (sbcl-cl-online-learning,
  cl-online-learning, ecl-cl-online-learning): New variables.
2019-10-06 14:28:55 +02:00
Guillaume Le Vaillant 6e76087223
gnu: Add cl-libsvm-format.
* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format,
  ecl-cl-libsvm-format): New variables.
2019-10-06 14:28:55 +02:00
Guillaume Le Vaillant 2601da0523
gnu: Add cl-store.
* gnu/packages/lisp.scm (sbcl-cl-store, cl-store, ecl-cl-store): New
  variables.
2019-10-06 14:28:51 +02:00