Commit Graph

17952 Commits (3a534f42644d6e02d5bb9aee05af3e73d5f3e913)

Author SHA1 Message Date
Ludovic Courtès 6cd1059340
doc: Add '--manifest' example using 'specification->package+output'.
* doc/guix.texi (Invoking guix package): Add --manifest example using
'specification->package+output'.
2017-01-17 23:57:15 +01:00
Ludovic Courtès 1f4f2360ad
gnu: guile-json: Update to 0.6.0.
* gnu/packages/guile.scm (guile-json): Update to 0.6.0.
2017-01-17 23:57:15 +01:00
Julien Lepiller fd6e260ef7
gnu: Add ocaml-ocurl.
* gnu/pcakages/ocaml.scm (ocaml-ocurl): New variable.
2017-01-17 23:22:07 +01:00
Julien Lepiller 800ab1fb16
gnu: Add ocaml-jsonm.
* gnu/packages/ocaml.scm (ocaml-jsonm): New variable.
2017-01-17 23:21:42 +01:00
Julien Lepiller 84290923d9
gnu: Add ocaml-uutf.
* gna/packages/ocaml.scm (ocaml-uutf): New variable.
2017-01-17 23:21:22 +01:00
Julien Lepiller 33f16b9a57
gnu: Add ocaml-uchar.
* gnu/packages/ocaml.scm (ocaml-uchar): New variable.
2017-01-17 23:20:55 +01:00
Julien Lepiller 6e9b678efe
gnu: Add ocaml-ulex.
* gnu/packages/ocaml.scm (ocaml-ulex): New variable.
2017-01-17 23:20:13 +01:00
Julien Lepiller 036b857978
gnu: Add ocaml-xmlm.
* gnu/packages/ocaml.scm (ocaml-xmlm): New variable.
2017-01-17 23:14:42 +01:00
Julien Lepiller 33e0702d8a
gnu: Add ocaml-bos.
* gnu/packages/ocaml.scm (ocaml-bos): New variable.
2017-01-17 23:14:38 +01:00
Julien Lepiller fbf38b0985
gnu: Add ocaml-fpath.
* gnu/packages/ocaml.scm (ocaml-fpath): New variable.
2017-01-17 23:14:34 +01:00
Julien Lepiller 9dc7dcb261
gnu: Add ocaml-logs.
* gnu/packages/ocaml.scm (ocaml-logs): New variable.
2017-01-17 23:13:19 +01:00
Ricardo Wurmus 66da3a9f31
gnu: Add r-msnid.
* gnu/packages/bioinformatics.scm (r-msnid): New variable.
2017-01-17 21:46:50 +01:00
Ricardo Wurmus 11879284cb
gnu: Add r-msnbase.
* gnu/packages/bioinformatics.scm (r-msnbase): New variable.
2017-01-17 21:46:50 +01:00
Ricardo Wurmus 6a67e181ac
gnu: Add r-pcamethods.
* gnu/packages/bioinformatics.scm (r-pcamethods): New variable.
2017-01-17 21:46:50 +01:00
Ricardo Wurmus 4aa7d592f1
gnu: Add r-mzid.
* gnu/packages/bioinformatics.scm (r-mzid): New variable.
2017-01-17 21:46:50 +01:00
Ricardo Wurmus 7c08afaf7b
gnu: Add r-vsn.
* gnu/packages/bioinformatics.scm (r-vsn): New variable.
2017-01-17 21:46:50 +01:00
Ricardo Wurmus 05c7e5fb76
gnu: Add r-affy.
* gnu/packages/bioinformatics.scm (r-affy): New variable.
2017-01-17 21:46:49 +01:00
Ricardo Wurmus 5c9d15055f
gnu: Add r-affyio.
* gnu/packages/bioinformatics.scm (r-affyio): New variable.
2017-01-17 21:46:49 +01:00
Ricardo Wurmus 71676a1f4c
gnu: Add r-mzr.
* gnu/packages/bioinformatics.scm (r-mzr): New variable.
2017-01-17 21:46:49 +01:00
Ricardo Wurmus ae26217430
gnu: Add r-protgenerics.
* gnu/packages/bioinformatics.scm (r-protgenerics): New variable.
2017-01-17 21:46:49 +01:00
Ricardo Wurmus 0e7d058e44
gnu: Add r-maldiquant.
* gnu/packages/bioinformatics.scm (r-maldiquant): New variable.
2017-01-17 21:46:49 +01:00
Ricardo Wurmus 1f40e73cb5
gnu: Add r-raremetals2.
* gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
2017-01-17 21:46:48 +01:00
Ricardo Wurmus fb1e528ef1
gnu: Add r-seqminer.
* gnu/packages/bioinformatics.scm (r-seqminer): New variable.
2017-01-17 21:46:48 +01:00
Ricardo Wurmus 26a281ef27
gnu: Add r-compquadform.
* gnu/packages/statistics.scm (r-compquadform): New variable.
2017-01-17 21:46:48 +01:00
Ricardo Wurmus 769fc6bb18
gnu: Add ribodiff.
* gnu/packages/bioinformatics.scm (ribodiff): New variable.
2017-01-17 21:46:48 +01:00
Ricardo Wurmus e84efc50d7
gnu: Add hisat2.
* gnu/packages/bioinformatics.scm (hisat2): New variable.
2017-01-17 21:46:48 +01:00
Ricardo Wurmus 5f764dd7ff
gnu: Add r-fivethirtyeight.
* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
2017-01-17 21:46:47 +01:00
Ricardo Wurmus 40effef7ca
gnu: powertabeditor: Update to 2.0.0-alpha9.
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9.
[source]: Simplify snippet.
[arguments]: Adjust phases; remove unnecessary configure flag.
2017-01-17 21:46:25 +01:00
Leo Famulari 46076d08ed
Revert "gnu: cups-filters: Disable mutool integration."
This change would cause 594 packages to be rebuilt, so it was moved to
the staging branch.

This reverts commit 58a7bbc5fe.
2017-01-17 15:13:54 -05:00
Leo Famulari cf3768fa06
gnu: webkitgtk: Update to 2.14.3 [security fixes].
Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3.
2017-01-17 14:56:13 -05:00
Tobias Geerinckx-Rice 58a7bbc5fe
gnu: cups-filters: Disable mutool integration.
* gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’
to #:configure-flags.
[inputs]: Remove mupdf.
2017-01-17 18:42:37 +01:00
Tobias Geerinckx-Rice 16869cecf6
gnu: libpsl: Update to 0.17.0.
* gnu/packages/web.scm (libpsl): Update to 0.17.0.
2017-01-17 18:42:36 +01:00
Tobias Geerinckx-Rice cdb93e50ea
gnu: proxychains-ng: Update to 4.12.
* gnu/packages/networking.scm (proxychains-ng): Update to 4.12.
2017-01-17 18:42:34 +01:00
Marius Bakke 718c12786b
gnu: password-store: Install bash completions.
* gnu/packages/password-utils.scm (password-store)[arguments]: Add
'install-shell-completions' phase.
2017-01-17 16:18:35 +01:00
Ricardo Wurmus c554c6bab8
gnu: gnucash: Update to 2.6.15.
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.15.
2017-01-17 15:07:08 +01:00
Björn Höfling 065d012511
gnu: Add proj.4.
* gnu/packages/geo.scm (proj.4): New variable.
(gnome-maps): Use license: prefix.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-17 14:41:08 +01:00
Marius Bakke f68647299c
gnu: xscreensaver: Update to 5.36.
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36.
2017-01-17 14:21:10 +01:00
Leo Famulari ae6591efa5
gnu: perl-image-exiftool: Update to 10.40.
* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40.
[synopsis, description]: Mention more capabilities.
2017-01-17 03:50:36 -05:00
Ricardo Wurmus 265afbdfe7
gnu: ghc-quickcheck-instances: Update to 0.3.12.
* gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12.
[inputs]: Add ghc-scientific and ghc-vector.
2017-01-17 03:58:19 +01:00
Leo Famulari 19083a5eee
gnu: imagemagick: Update to 6.9.7-4 [security fixes].
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4.
2017-01-16 18:39:41 -05:00
Leo Famulari 9381a02a53
gnu: Add scrypt.
* gnu/packages/crypto.scm (scrypt): New variable.
2017-01-16 18:02:14 -05:00
Ricardo Wurmus ce9701fb95
gnu: Add emacs-stripe-buffer.
* gnu/packages/emacs.scm (emacs-stripe-buffer): New variable.
2017-01-16 23:37:43 +01:00
Ricardo Wurmus 0b35f11d76
gnu: Add emacs-git-timemachine.
* gnu/packages/emacs.scm (emacs-git-timemachine): New variable.
2017-01-16 23:37:43 +01:00
Ludovic Courtès ae21519f63
gnu: guile-sqlite3: Provide a new source URL.
* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change.
2017-01-16 23:27:23 +01:00
Ludovic Courtès 384344198d
file-systems: 'file-system-needed-for-boot?' is #t for parents of the store.
Suggested by John Darrington <john@darrington.wattle.id.au>.

* gnu/system/file-systems.scm (%not-slash): New variable.
(file-prefix?): New procedure.
(file-system-needed-for-boot?): Use it to check whether FS holds the
store.
* tests/file-systems.scm ("file-system-needed-for-boot?"): New test.
* gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove
'needed-for-boot?' field for "/gnu".
2017-01-16 23:27:23 +01:00
Ricardo Wurmus b91cfa22e1
gnu: Add r-centipede.
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
2017-01-16 23:18:27 +01:00
Julien Lepiller 1fdfbadff0
gnu: Add ocaml-lwt.
* gnu/packages/ocaml.scm (ocaml-lwt): New variable.
2017-01-16 22:34:53 +01:00
Julien Lepiller 37f17e2a1e
gnu: Add ocaml-ssl.
* gnu/packages/ocaml.scm (ocaml-ssl): New variable.
2017-01-16 22:34:51 +01:00
Julien Lepiller 1342fce102
gnu: Add ocaml-react.
* gnu/packages/ocaml.scm (ocaml-react): New variable.
2017-01-16 22:34:48 +01:00
Julien Lepiller 0a7b43a818
gnu: Add ocaml-ppx-tools.
* gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable.
2017-01-16 22:34:45 +01:00