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33399 Commits

Author SHA1 Message Date
Ricardo Wurmus c57e50b2b9
gnu: pigx-chipseq: Update to 0.0.17. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.17.
[arguments]: Remove "wrap-executable" phase.
 2018-06-22 11:40:27 +02:00
Pierre Neidhardt 145b06938c
gnu: git: Add "credential-netrc" output. 
* gnu/packages/version-control.scm (git): Add "credential-netrc"
output.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2018-06-22 11:37:35 +02:00
Ludovic Courtès cf81ddefc8
gnu: gnome-dictionary: Update to 3.26.1. 
* gnu/packages/gnome.scm (gnome-dictionary): Update to 3.26.1.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]; New field.
 2018-06-22 10:23:31 +02:00
Ludovic Courtès de30f71a09
build: Remove leftover reference to nix/libstore/schema.sql. 
This is a followup to 3931c76154.
Reported by Julien Lepiller.

* nix/local.mk (EXTRA_DIST): Remove schema.sql.
 2018-06-22 10:23:31 +02:00
Ludovic Courtès 6fe419743d
Do not record store file name in bioinformatics.scm. 
* gnu/packages/bioinformatics.scm (dropseq-tools): Replace full store
file name with ellipses.
 2018-06-22 10:23:31 +02:00
Clément Lassieur 5ca5ab8ba7
gnu: parallel: Remove 'bash' input. 
Because it's implicit.

* gnu/packages/parallel.scm (parallel)[inputs]: Remove 'bash'.
 2018-06-22 09:35:13 +02:00
Tobias Geerinckx-Rice 8edebd3207
gnu: nyx: Show header stats. 
This is a follow-up to commit 18ab54d4a2
and fixes a regression introduced by Nyx 2.0.4 + Python 3.

* gnu/packages/tor.scm (nyx)[source]: Add patch.
* gnu/packages/patches/nyx-show-header-stats-with-python3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-06-22 01:07:20 +02:00
Clément Lassieur 4e7950fdce
gnu: parallel: Wrap program instead of substituting 'ps' and 'perl'. 
* gnu/packages/parallel.scm (parallel)[arguments]: Replace 'ps' and 'perl'
substitutions with a 'wrap-program' phase.  Move the 'post-install-test' phase
after it.
[inputs]: Add bash.
 2018-06-22 00:48:22 +02:00
Tobias Geerinckx-Rice 18ab54d4a2
gnu: nyx: Update to 2.0.4. 
* gnu/packages/tor.scm (nyx): Update to 2.0.4.
[source]: Use proper PYPI-URI release tarball.
[native-inputs]: Remove (possibly outdated) test dependencies for now.
[arguments]: Remove no-longer-supported #:configure-flags, adding new
‘install-man-page’ and ‘install-sample-configuration’ phases.
Use setuptools. Disable tests.
 2018-06-22 00:28:04 +02:00
Tobias Geerinckx-Rice b544dde3e7
gnu: perl-catalyst-runtime: Update to 5.90118. 
* gnu/packages/web.scm (perl-catalyst-runtime): Update to 5.90118.
[source]: Update URI.
[native-inputs]: Remove perl-module-install.
[inputs]: Remove perl-class-data-inheritable, perl-http-request-ascgi,
perl-moosex-role-withoverloading, and perl-namespace-autoclean.
 2018-06-22 00:25:40 +02:00
Tobias Geerinckx-Rice 17fe49b6ac
gnu: perl-catalystx-script-server-starman: Update to 0.03. 
* gnu/packages/web.scm (perl-catalystx-script-server-starman): Update to 0.03.
 2018-06-22 00:25:25 +02:00
Tobias Geerinckx-Rice df23cac752
gnu: nyx: Update home page. 
* gnu/packages/tor.scm (nyx)[home-page]: Update.
[description]: Remove last reference to old ‘arm’ project name.
 2018-06-22 00:20:12 +02:00
Tobias Geerinckx-Rice 4e3a72d9c5
gnu: nyx: Return #t from all phases. 
* gnu/packages/video.scm (nyx)[arguments]: Substitute INVOKE for SYSTEM*.
 2018-06-22 00:20:12 +02:00
Tobias Geerinckx-Rice 1e501ffeaa
gnu: dwm: Return #t from all phases. 
* gnu/packages/video.scm (dwm)[arguments]: Substitute INVOKE for SYSTEM*.
 2018-06-22 00:20:12 +02:00
Tobias Geerinckx-Rice a0c5dafcc3
gnu: zile-on-guile: Return #t from all phases. 
* gnu/packages/zile.scm (zile-on-guile)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-06-22 00:20:12 +02:00
Tobias Geerinckx-Rice 1a135896b3
gnu: vpnc-scripts: Update to 20180226.07c3518. 
* gnu/packages/vpn.scm (vpnc-scripts): Update to 20180226.07c3518.
 2018-06-22 00:20:12 +02:00
Tobias Geerinckx-Rice 863501b723
gnu: vpnc-scripts: Return #t from all phases. 
* gnu/packages/vpn.scm (vpnc-scripts)[arguments]: Substitute INVOKE for
SYSTEM*. Return #t rather than undefined from phases.
 2018-06-22 00:20:11 +02:00
Tobias Geerinckx-Rice 2cd8e6e066
gnu: neofetch: Tweak synopsis & description. 
* gnu/packages/admin.scm (neofetch)[synopsis, description]: Avoid
abbreviation (but draw the line at ASCII).
 2018-06-22 00:20:11 +02:00
Tobias Geerinckx-Rice 6a163a3fe8
gnu: hplip: Tweak synopsis & description. 
* gnu/packages/cups.scm (hplip)[synopis]: Remove Random Capitalisation.
[description]: Likewise. Define ‘PPD’.
 2018-06-22 00:20:11 +02:00
Tobias Geerinckx-Rice bb6c3d2332
gnu: libsemanage: Return #t from all phases. 
* gnu/packages/selinux.scm (libsemanage)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-06-22 00:20:11 +02:00
Tobias Geerinckx-Rice 1fe5791d8d
gnu: mplayer: Return #t from all phases. 
* gnu/packages/video.scm (mplayer)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-06-22 00:20:10 +02:00
Tobias Geerinckx-Rice 52fb5b3aee
gnu: vapoursynth: Return #t from all phases. 
* gnu/packages/video.scm (vapoursynth)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-06-22 00:20:10 +02:00
Tobias Geerinckx-Rice e626984639
gnu: libsmpeg: Return #t from all phases. 
* gnu/packages/video.scm (libsmpeg)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-06-22 00:20:10 +02:00
Tobias Geerinckx-Rice da6f345c71
gnu: handbrake: Return #t from all phases. 
* gnu/packages/video.scm (handbrake)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-06-22 00:20:10 +02:00
Tobias Geerinckx-Rice bf6edb9596
gnu: libmediainfo: Return #t from all phases. 
* gnu/packages/video.scm (libmediainfo)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-06-22 00:20:10 +02:00
Tobias Geerinckx-Rice d793d9a601
gnu: mediainfo: Return #t from all phases. 
* gnu/packages/video.scm (mediainfo)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-06-22 00:20:09 +02:00
Tobias Geerinckx-Rice 6b677bb004
gnu: livemedia-utils: Return #t from all phases. 
* gnu/packages/video.scm (livemedia-utils)[arguments]: Substitute
INVOKE for SYSTEM*.
 2018-06-22 00:20:09 +02:00
Tobias Geerinckx-Rice 63181c8599
gnu: frei0r-plugins: Return #t from all phases. 
* gnu/packages/video.scm (frei0r-plugins)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-06-22 00:20:09 +02:00
Ludovic Courtès 68a58775e0
system: Mapped devices needed for boot do not yield Shepherd services. 
Fixes <https://bugs.gnu.org/31889>.
Reported by Taylan Kammer <taylanbayirli@gmail.com>.

* gnu/system.scm (non-boot-file-system-service)[mapped-devices-for-boot]:
New variable.
Remove dependencies of FS that are members of MAPPED-DEVICES-FOR-BOOT.
(mapped-device-user): Rename to...
(mapped-device-users): ... this.  Use 'filter' instead of 'find'.
(operating-system-user-mapped-devices)
(operating-system-boot-mapped-devices): Use 'any
file-system-needed-for-boot?' instead of looking at the first user.
* tests/system.scm ("non-boot-file-system-service"): New test.
 2018-06-21 23:54:15 +02:00
Ludovic Courtès 1f1d76a178
build-self: Avoid recompilations of 'compute-guix-derivation'. 
* build-aux/build-self.scm (build-program)["compute-guix-derivation"]:
Honor the SOURCE command-line argument.  Add a VERSION command-line
argument and honor it.
(build): Pass VERSION to BUILD.
 2018-06-21 23:54:15 +02:00
Clément Lassieur 3cd1aafa83
gnu: parallel: Update to 20180622. 
* gnu/packages/parallel.scm (parallel): Update to 20180622.
 2018-06-21 23:26:24 +02:00
Tobias Geerinckx-Rice 407ef4b38a
gnu: hplip: Add Qt GUI support. 
Some tools (like ‘hp-toolbox’) still refuse to launch, but at least
others (like ‘hp-systrax’) now seem to work.

* gnu/packages/cups.scm (hplip)[arguments]: Add #configure-flags for Qt.
[inputs]: Add python-gobject and python-pyqt.
 2018-06-21 18:53:34 +02:00
Tobias Geerinckx-Rice 058df6cd0a
gnu: hplip: Update to 3.18.6. 
* gnu/packages/cups.scm (hplip): Update to 3.18.6.
 2018-06-21 18:51:00 +02:00
Tobias Geerinckx-Rice d9cdcad1e0
Order (gnu packages cups) module imports alphabetically. 
* gnu/packages/cups.scm (define-module): Order module imports
alphabetically.
 2018-06-21 18:51:00 +02:00
Tobias Geerinckx-Rice b345025137
gnu: gimp: Update to 2.10.2. 
* gnu/packages/gimp.scm (gimp): Update to 2.10.2.
 2018-06-21 18:50:59 +02:00
Tobias Geerinckx-Rice 6b1ea609ba
gnu: gegl: Update to 0.4.2. 
* gnu/packages/gimp.scm (gegl): Update to 0.4.2.
 2018-06-21 18:50:59 +02:00
Tobias Geerinckx-Rice 9b63458b09
gnu: babl: Update to 0.1.50. 
* gnu/packages/gimp.scm (babl): Update to 0.1.50.
 2018-06-21 18:50:58 +02:00
Tobias Geerinckx-Rice 603822b090
gnu: ruby-rack-protection: Update to 2.0.3. 
* gnu/packages/ruby.scm (ruby-rack-protection): Update to 2.0.3.
 2018-06-21 18:50:58 +02:00
Tobias Geerinckx-Rice 9347bbf4cf
gnu: ruby-rack: Update to 2.0.5. 
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.5.
 2018-06-21 18:50:57 +02:00
Tobias Geerinckx-Rice e5bea952ea
gnu: sdl2-image: Update to 2.0.3. 
* gnu/packages/sdl.scm (sdl2-image): Update to 2.0.3.
 2018-06-21 17:33:13 +02:00
Ricardo Wurmus 945449b40b
guix: Fix system reconfigure. 
This is a follow-up to 378daa8cb6.

* guix/scripts/system.scm (switch-to-system): Lower the script.
 2018-06-21 16:54:06 +02:00
Marius Bakke 4dfea1010a
Merge branch 'master' into staging 2018-06-21 15:52:26 +02:00
Rutger Helling a34801ca68
gnu: youtube-dl: Update to 2018.06.19. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.06.19.
 2018-06-21 14:32:33 +02:00
Ricardo Wurmus 1a50321752
gnu: r-httpuv: Update to 1.4.4.1. 
* gnu/packages/web.scm (r-httpuv): Update to 1.4.4.1.
 2018-06-21 10:31:22 +02:00
Ricardo Wurmus 58630da84c
gnu: r-mgcv: Update to 1.8-24. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-24.
 2018-06-21 10:31:22 +02:00
Ricardo Wurmus 92b8a481d4
gnu: r-mice: Update to 3.1.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.1.0.
 2018-06-21 10:31:22 +02:00
Ricardo Wurmus 9de9dcd913
gnu: r-progress: Update to 1.2.0. 
* gnu/packages/cran.scm (r-progress): Update to 1.2.0.
[propagated-inputs]: Add r-crayon and r-hms.
 2018-06-21 10:31:22 +02:00
Ricardo Wurmus 1f73fd017c
gnu: r-complexheatmap: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.1.
 2018-06-21 10:31:22 +02:00
Ricardo Wurmus a1c7016498
gnu: r-delayedarray: Update to 0.6.1. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.1.
 2018-06-21 10:31:22 +02:00
Ricardo Wurmus eafd35bad5
gnu: r-optparse: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.6.0.
 2018-06-21 10:31:22 +02:00