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37778 Commits

Author SHA1 Message Date
Mark H Weaver a7dad69a32
gnu: linux-libre@4.9: Update to 4.9.171. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.171.
 2019-04-28 13:33:36 -04:00
Mark H Weaver 4987e2b3b1
gnu: linux-libre@4.4: Update to 4.4.179. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.179.
 2019-04-28 13:32:54 -04:00
Christopher Baines bf949323b9
gnu: Add cloud-utils. 
* gnu/packages/admin.scm (cloud-utils): New variable.
 2019-04-28 17:37:17 +01:00
Ricardo Wurmus cee06123c8
gnu: Remove unused module reference. 
* gnu/services/web.scm: Remove reference to (gnu packages guile).
 2019-04-28 16:05:57 +02:00
Ricardo Wurmus 6b1c7ac8ed
gnu: hypre: Unconditionally return #T from build phases. 
* gnu/packages/maths.scm (hypre)[arguments]: Use INVOKE and unconditionally
return #T from build phases.
 2019-04-28 16:05:57 +02:00
Ricardo Wurmus 9cd82b1c9d
gnu: jacal: Unconditionally return #T from configure phase. 
* gnu/packages/maths.scm (jacal)[arguments]: Use INVOKE in configure phase.
 2019-04-28 16:05:57 +02:00
Ricardo Wurmus 32d5360f43
gnu: z3: Unconditionally return #T from build phases. 
* gnu/packages/maths.scm (z3)[arguments]: Use INVOKE in build phases.
 2019-04-28 16:05:56 +02:00
Ricardo Wurmus cb6f44d4e4
gnu: atlas: Always return #T from build phases. 
* gnu/packages/maths.scm (atlas)[arguments]: Always return #T from build
phases; use INVOKE.
 2019-04-28 16:05:56 +02:00
Ricardo Wurmus 1ec1782106
gnu: make-blis: Always return #T from configure phase. 
* gnu/packages/maths.scm (make-blis)[arguments]: Use INVOKE.
 2019-04-28 16:05:56 +02:00
Ricardo Wurmus 7055407770
gnu: kdevplatform: Use INVOKE. 
* gnu/packages/kde.scm (kdevplatform)[arguments]: Use INVOKE and return #T
unconditionally.
 2019-04-28 16:05:53 +02:00
Ludovic Courtès 7d62fa206b
Merge branch 'staging' 2019-04-28 14:45:35 +02:00
Ricardo Wurmus c5db31d414
gnu: gnome-shell: Add gdk-pixbuf+svg to inputs. 
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Add gdk-pixbuf+svg.
 2019-04-27 22:57:03 +02:00
Ricardo Wurmus 3153ca9d5f
gnu: r-rhtslib: Fix build. 
* gnu/packages/bioinformatics.scm (r-rhtslib)[arguments]: Add
"--no-staged-install" to configure flags.
 2019-04-27 22:45:02 +02:00
Ricardo Wurmus fc3ebc3023
gnu: r-ggbio: Fix build. 
* gnu/packages/bioinformatics.scm (r-ggbio)[arguments]: Add build phase to
patch out typo.
 2019-04-27 20:45:21 +02:00
Ricardo Wurmus d22d790409
gnu: r-sjplot: Update to 2.6.3. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.6.3.
[propagated-inputs]: Add r-bayestestr, r-insight, and r-performance.
 2019-04-27 20:45:20 +02:00
Ricardo Wurmus 711a2f0611
gnu: Add r-performance. 
* gnu/packages/cran.scm (r-performance): New variable.
 2019-04-27 20:45:20 +02:00
Ricardo Wurmus c4568c5c64
gnu: Add r-bayestestr. 
* gnu/packages/cran.scm (r-bayestestr): New variable.
 2019-04-27 20:45:20 +02:00
Ludovic Courtès 7dbdbbfd6e
installer: Add missing i18n in the partitioning pages. 
* gnu/installer/newt/partition.scm (run-scheme-page): Add missing 'G_'
for ITEMS.
(run-partioning-page): Likewise.
(run-partition-page): Move misplaced call to 'G_'.
 2019-04-27 19:31:50 +02:00
Ludovic Courtès 61e41d5132
gnu: guix: Update to 0c329bf. 
* gnu/packages/package-management.scm (guix): Update to 0c329bf.
 2019-04-27 19:31:50 +02:00
Julien Lepiller e821a6406a
gnu: ocaml-qtest: Update to 2.9. 
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.9.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
 2019-04-27 19:03:43 +02:00
Julien Lepiller bcc718be03
gnu: ocaml-ezjsonm: Update to 1.1.0. 
* gnu/packages/ocaml.scm (ocaml-ezjsonm): Update to 1.1.0.
 2019-04-27 19:03:28 +02:00
Julien Lepiller 58c3118f59
gnu: ocaml-re: Update to 1.9.0. 
* gnu/packages/ocaml.scm (ocaml-re): Update to 1.9.0.
(ocaml-uri): Fix build.
 2019-04-27 19:03:25 +02:00
Julien Lepiller e58d05c32e
gnu: ocaml-csv: Update to 2.2. 
* gnu/packages/ocaml.scm (ocaml-csv): Update to 2.2.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
 2019-04-27 19:03:21 +02:00
Julien Lepiller f9caa17b63
gnu: ocaml-spawn: Update to 0.13.0. 
* gnu/packages/ocaml.scm (ocaml-spawn): Update to 0.13.0.
 2019-04-27 19:03:14 +02:00
Julien Lepiller b8e2bd4fc8
gnu: knot: Fix typos. 
* gnu/services/dns.scm: Fix typos.
 2019-04-27 15:56:35 +02:00
Ludovic Courtès ef1f1ca742
gnu: bubblewrap: Fix Texinfo markup in description. 
Fixes a regression introduced in
7ecd1761a2.

* gnu/packages/virtualization.scm (bubblewrap): Fix typo.
 2019-04-27 15:41:36 +02:00
Ludovic Courtès 6e0521eeed
vm-image: Allow for password-less sudo. 
* gnu/system/examples/vm-image.tmpl (sudoers-file): New field.
 2019-04-27 15:08:18 +02:00
Ludovic Courtès ff587e0fc0
vm-image: Mention 'info guix' in the MOTD. 
* gnu/system/examples/vm-image.tmpl (vm-image-motd): Mention 'info guix'.
 2019-04-27 15:08:18 +02:00
Ludovic Courtès 5df29aad3b
vm-image: Add a font to the global profile. 
* gnu/system/examples/vm-image.tmpl (packages): Add FONT-BITSTREAM-VERA,
for use by xfce-terminal, IceCat, etc.
 2019-04-27 15:08:17 +02:00
Ludovic Courtès ea2acfe98a
doc: Update bit about SSH in the VM. 
* doc/guix.texi (Running Guix in a VM): Remove mentions of 'lsh-server';
mention 'openssh-service-type' and add a cross-reference.
* gnu/system/examples/vm-image.tmpl (services): Add a commented-out line
for 'openssh-service-type'.
 2019-04-27 15:08:17 +02:00
Julien Lepiller 6cd7b1be7e
gnu: knot: Add configuration fields. 
* gnu/services/dns.scm (knot-zone-configuration)[zonefile-load]
[journal-content, max-journal-usage, max-journal-depth, max-zone-size]:
New fields.
(knot-zone-config): Serialize them.
* doc/guix.texi (DNS Services): Document them.
 2019-04-27 13:02:31 +02:00
Clément Lassieur bdb372a647
gnu: gajim: Update to 1.1.3. 
* gnu/packages/messaging.scm (gajim): Update to 1.1.3.
 2019-04-27 12:07:50 +02:00
Clément Lassieur bf98373fcd
gnu: python-nbxmpp: Update to 0.6.10. 
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.10.
 2019-04-27 12:07:50 +02:00
Ricardo Wurmus ea9d634c7e
gnu: r-quadprog: Update to 1.5-6. 
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-6.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus bea8205936
gnu: r-caret: Update to 6.0-84. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-84.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 0d32caeeed
gnu: r-fpc: Update to 2.1-11.2. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.2.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 9fbbe2623f
gnu: r-rngtools: Update to 1.3.1.1. 
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.1.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus a563e75ea4
gnu: r-mass: Update to 7.3-51.4. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.4.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus aa97fbfa95
gnu: r-boot: Update to 1.3-22. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-22.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 071390aa09
gnu: r-sf: Update to 0.7-4. 
* gnu/packages/cran.scm (r-sf): Update to 0.7-4.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 1bbfca18c5
gnu: r-classint: Update to 0.3-3. 
* gnu/packages/cran.scm (r-classint): Update to 0.3-3.
[propagated-inputs]: Add r-kernsmooth.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 7b18fac45b
gnu: r-survey: Update to 3.36. 
* gnu/packages/cran.scm (r-survey): Update to 3.36.
[propagated-inputs]: Add r-mitools.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 779174e4bb
gnu: r-ordinal: Update to 2019.4-25. 
* gnu/packages/cran.scm (r-ordinal): Update to 2019.4-25.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 9c4f118bf7
gnu: Add r-mitools. 
* gnu/packages/cran.scm (r-mitools): New variable.
 2019-04-27 12:03:10 +02:00
Clément Lassieur 747c8f2a20
gnu: mozjs-38: Fix URI. 
* gnu/packages/gnuzilla.scm (mozjs-38): Fix URI.
 2019-04-27 11:59:49 +02:00
Rutger Helling 816014d39d
gnu: wine-staging: Update to 4.7. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.7.
* gnu/packages/wine.scm (wine-staging): Update to 4.7.
 2019-04-27 11:33:23 +02:00
Ludovic Courtès 435551f0fa
services: knot: Fix configuration file generation. 
Fixes a regression introduced in
92eb600f8a.

* gnu/services/dns.scm (knot-config-file): Add ungexp around call to
'knot-configuration-includes'.
 2019-04-27 00:19:41 +02:00
Ludovic Courtès aea1a42e00
system: Add boot file systems to /etc/fstab. 
* gnu/system.scm (essential-services): Pass FSTAB-SERVICE-TYPE the list
of file systems that match 'file-system-needed-for-boot?'.
 2019-04-27 00:11:52 +02:00
Ludovic Courtès 74685a4369
services: file-system: Filter what goes to /etc/fstab. 
Fixes a longstanding issue whereby, due to our long fstab that included
pseudo file systems like cgroup mounts, graphical file managers would
display all of these.  Initially reported at
<https://lists.gnu.org/archive/html/help-guix/2017-11/msg00084.html>.

* gnu/services/base.scm (file-system-fstab-entries): New procedure.
(file-system-service-type): Use it to extend FSTAB-SERVICE-TYPE.
 2019-04-27 00:11:52 +02:00
Julien Lepiller b05290380f
gnu: ocaml-ppxlib: Update to 0.6.0. 
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.6.0.
(dune): Update to 1.9.1.
 2019-04-26 23:57:00 +02:00
Julien Lepiller cf338cc305
gnu: ocaml-migrate-parsetree: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree)[properties]: New
field.
 2019-04-26 23:35:24 +02:00
Julien Lepiller b7ebcb043c
gnu: ocaml-ppx-expect: Update to 0.12.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-inline-test): Update to 0.12.0.
(ocaml-ppx-expect): Update to 0.12.0.
 2019-04-26 23:35:19 +02:00
Julien Lepiller ee33e415e7
gnu: ocaml-frontc: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-frontc)[properties]: New field.
 2019-04-26 23:35:17 +02:00
Julien Lepiller d4857001a1
gnu: ocaml-ppx-tools: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-ppx-tools)[properties]: New field.
 2019-04-26 23:35:15 +02:00
Julien Lepiller f08b235dab
gnu: ocaml-lwt-log: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-lwt-log)[properties]: New field.
 2019-04-26 23:35:13 +02:00
Julien Lepiller c949a4eb1f
gnu: ocaml-ppx-tools-versioned: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-ppx-tools-versioned)[properties]: New
field.
 2019-04-26 23:35:11 +02:00
Julien Lepiller d9faae6254
gnu: ocaml-compiler-libs: Add upstream name. 
* gnu/packages/ocaml.scm (ocaml-compiler-libs)[properties]: New field.
 2019-04-26 23:35:08 +02:00
Julien Lepiller 1e5937c8c0
gnu: ocaml-ppx-derivers: Update to 1.2.1. 
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): Update to 1.2.1.
 2019-04-26 23:35:03 +02:00
Julien Lepiller 1e8439de27
gnu: ocaml-pcre: Update to 7.4.1. 
* gnu/packages/ocaml.scm (ocaml-pcre): Update to 7.4.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
 2019-04-26 23:34:59 +02:00
Julien Lepiller acb98ad956
gnu: ocaml-stringext: Update to 1.5.0. 
* gnu/packages/ocaml.scm (ocaml-stringext): Update to 1.5.0.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
 2019-04-26 23:34:54 +02:00
Julien Lepiller 09cd92a983
gnu: ocaml-zarith: Update to 1.7. 
* gnu/packages/ocaml.scm (ocaml-zarith): Update to 1.7.
[source]: Use git-fetch.
 2019-04-26 23:34:41 +02:00
Julien Lepiller eddfd11d70
gnu: ocaml-topkg: Update to 1.0.0. 
* gnu/packages/ocaml.scm (ocaml-topkg): Update to 1.0.0.
 2019-04-26 23:34:31 +02:00
Julien Lepiller 853af25ecd
gnu: ocaml-mtime: Update to 1.1.0. 
* gnu/packages/ocaml.scm (ocaml-mtime): Update to 1.1.0.
 2019-04-26 23:34:26 +02:00
Julien Lepiller 3f59ecfcb5
gnu: ocaml-qcheck: Update to 0.9. 
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.9.
 2019-04-26 23:34:10 +02:00
Ricardo Wurmus 152cbc3ca5
gnu: r-with-tests: Update to 3.6.0. 
* gnu/packages/statistics.scm (r-with-tests): Update to 3.6.0.
[arguments]: Adjust "build-reproducibly" phase.
[native-inputs]: Add a texlive-union consisting of texlive-fonts-amsfonts,
texlive-fonts-ec, texlive-latex-amsfonts, texlive-latex-base,
texlive-latex-fancyvrb, texlive-latex-graphics, texlive-latex-hyperref,
texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-upquote, and
texlive-latex-url.
 2019-04-26 21:00:41 +02:00
Ricardo Wurmus 7f55904558
gnu: Add umi-tools. 
* gnu/packages/bioinformatics.scm (umi-tools): New variable.
 2019-04-26 21:00:37 +02:00
Timothy Sample 8caa458953
gnu: gdm: Install a placeholder desktop entry. 
This fixes <https://bugs.gnu.org/35068>.

* gnu/packages/gnome.scm (gdm)[arguments]: Add a phase that installs a
placeholder desktop entry file.

Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-26 13:57:39 -04:00
Leo Famulari 8597aecb84
gnu: MPD: Update to 0.21.8. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.8.
 2019-04-26 13:36:59 -04:00
Nicolas Goaziou 936a4f4371
gnu: mame: Update to 0.209. 
* gnu/packages/emulators.scm (mame): Update to 0.209.
 2019-04-26 18:54:16 +02:00
Julien Lepiller e379d1b5ef
gnu: dns: Fix configuration formating. 
* gnu/services/dns.scm (format-string-list): Fix formating of lists with
only one symbol.
 2019-04-26 18:37:48 +02:00
Julien Lepiller 273ba2552b
gnu: ocaml-integers: Update to 0.3.0. 
* gnu/packages/ocaml.scm (ocaml-integers): Update to 0.3.0.
 2019-04-26 18:29:02 +02:00
Julien Lepiller 12c3f62ab2
gnu: ocaml-easy-format: Update to 1.3.1. 
* gnu/packages/ocaml.scm (ocaml-easy-format): Update to 1.3.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
 2019-04-26 18:28:58 +02:00
Julien Lepiller 7e49538483
gnu: ocaml-fpath: Update to 0.7.2. 
* gnu/packages/ocaml.scm (ocaml-fpath): Update to 0.7.2.
 2019-04-26 18:28:54 +02:00
Julien Lepiller b858c5ac39
gnu: ocaml-ssl: Update to 0.5.7. 
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.7.
 2019-04-26 18:28:49 +02:00
Julien Lepiller 44b8507d5e
gnu: ocaml-octavius: Update to 1.2.1. 
* gnu/packages/ocaml.scm (ocaml-octavius): Update to 1.2.1.
 2019-04-26 18:28:46 +02:00
Julien Lepiller 22cd6a1d4f
gnu: ocaml-result: Update to 1.3. 
* gnu/packages/ocaml.scm (ocaml-result): Update to 1.3.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
 2019-04-26 18:28:42 +02:00
Julien Lepiller 5cb40adaa2
gnu: ocaml-utop: Update to 2.3.0. 
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.3.0.
 2019-04-26 18:28:25 +02:00
Ludovic Courtès d7b05620a9
vm-image: Remove NetworkManager & co. and add the DHCP client. 
* gnu/system/examples/vm-image.tmpl (services): Remove wpa-supplicant,
cups-pk-helper, and NetworkManager.  Add DHCP-CLIENT-SERVICE-TYPE.
 2019-04-26 18:24:55 +02:00
Ludovic Courtès a9a0790376
gnu: xfdesktop: Stick a Guix logo in the background image. 
* gnu/packages/xfce.scm (xfdesktop)[source](modules, snippet): New
fields.
[arguments]: New field.
[native-inputs]: Add INKSCAPE and IMAGEMAGICK.
 2019-04-26 18:23:56 +02:00
Ludovic Courtès 94e1439800
services: cups-pk-helper: Export. 
* gnu/services/desktop.scm (cups-pk-helper-service-type): Export.
 2019-04-26 18:07:46 +02:00
Ludovic Courtès 1ac6c33cae
vm-image: Use the actual file name of the current file. 
* gnu/system/examples/vm-image.tmpl (this-file): Use 'basename' and
'current-source-location'.
 2019-04-26 16:47:11 +02:00
Ludovic Courtès 98f035482f
installer: Actually reboot when the user presses "Reboot." 
* gnu/installer/newt/final.scm (run-install-success-page): Return
'success.
* gnu/installer.scm (installer-program): Check the result of the 'final
step and reboot upon success.
 2019-04-26 14:19:36 +02:00
Ludovic Courtès 9529f7850e
installer: Take 'guix system init' exit code into account. 
This allows the installer to distinguish success from failure, and also
ensures the shell that runs 'guix system init' exits upon completion.

* gnu/installer/utils.scm (run-shell-command)[pause]: New procedure.
Add "exec" before COMMAND in the script.  Guard 'invoke' call and handle
'invoke-error?'.  Add call to 'pause' on completion.
* gnu/installer/final.scm (install-system): Remove 'false-if-exception'.
 2019-04-26 14:19:36 +02:00
Ludovic Courtès 6c849cdb98
installer: Run wrapped program with 'execl', not 'system'. 
'system' invokes /bin/sh, which is certainly not needed here.

* gnu/installer.scm (installer-program): Use 'execl', not 'system'.
 2019-04-26 14:19:36 +02:00
Ludovic Courtès 538b99f31f
system: Provide a new VM image configuration. 
* gnu/system/examples/vm-image.tmpl: Rewrite.
* doc/guix.texi (Running Guix in a VM): Adjust accordingly.
 2019-04-26 14:19:36 +02:00
Ludovic Courtès 504a0fc636
accounts: Always honor the configured user account shell. 
Starting from commit 0ae735bcc8, Guix
System would preserve the user shell across reconfigure and reboot.
This was done so as to allow for the use of 'chsh'.

This proved to be a misguided decision.  This commit goes back to
considering user shells as config and not "state."

* gnu/build/accounts.scm (allocate-passwd): Do not use shell from
PREVIOUS.
 2019-04-26 14:19:36 +02:00
Tobias Geerinckx-Rice 7342923d98
gnu: wgetpaste: Add and use wget input. 
This package has but one purpose; late binding's overkill.

* gnu/packages/wget.scm (wgetpaste)[arguments]: Add ‘use-inputs’ phase.
[inputs]: Add wget.
 2019-04-26 04:36:02 +02:00
Tobias Geerinckx-Rice 4f7db08571
gnu: hcxdumptool: Update to 5.1.4. 
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.4.
 2019-04-26 00:58:16 +02:00
Tobias Geerinckx-Rice 03c443ce8f
gnu: hcxtools: Update to 5.1.4. 
* gnu/packages/networking.scm (hcxtools): Update to 5.1.4.
 2019-04-26 00:58:06 +02:00
Tobias Geerinckx-Rice 55036ddc9a
gnu: soundtouch: Update to 2.1.1. 
* gnu/packages/audio.scm (soundtouch): Update to 2.1.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
Remove patches.
* gnu/packages/patches/soundtouch-CVE-2018-1000223.patch,
gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-04-26 00:56:32 +02:00
Tobias Geerinckx-Rice 88507036f6
gnu: tmux-xpanes: Update to 4.1.0. 
* gnu/packages/tmux.scm (tmux-xpanes): Update to 4.1.0.
 2019-04-26 00:54:00 +02:00
Arun Isaac 9be92490b5
gnu: librepcb: Update to 0.1.1. 
* gnu/packages/engineering.scm (librepcb): Update to 0.1.1.
 2019-04-26 01:58:30 +05:30
Julien Lepiller 92eb600f8a
gnu: knot-service: Add includes field in configuration. 
* gnu/services/dns.scm (knot-configuration): Add includes field.
(verify-knot-configuration): Check includes content.
(knot-config-file): Serialize includes.
* doc/guix.texi (DNS Services): Document it.
 2019-04-25 21:44:55 +02:00
Leo Famulari ca3cf2d58e
gnu: tmux: Update to 2.9. 
* gnu/packages/tmux.scm (tmux): Update to 2.9.
 2019-04-25 13:57:09 -04:00
Julien Lepiller b68aff1f05
gnu: certbot: Add support for manual plugin. 
* gnu/services/certbot.scm (certificate-configuration): Add challenge,
auth-hook and cleanup-hook fields.
(certbot-command): Use them.
* doc/guix.texi (Certificate Services): Document them.
 2019-04-25 19:46:18 +02:00
Julien Lepiller c3634df2a4
gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependent 
packages.

This fixes <https://bugs.gnu.org/27462>.

* gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit)
(ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith)
(ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext)
(ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result)
(ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv)
(ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring)
(ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl)
(ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath)
(ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar)
(ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64)
(ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib)
(ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver)
(ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv)
(ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare)
(ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib)
(ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv)
(ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate)
(ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value)
(ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail)
(ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message)
(ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re)
(ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel)
(ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core)
(ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async)
(ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables.
* guix/build-system/ocaml.scm (default-ocaml4.02)
(default-ocaml4.02-findlib, package-with-ocaml4.02)
(strip-ocaml4.02-variant): Remove variables.
 2019-04-25 19:01:31 +02:00
Julien Lepiller 6e49426761
gnu: ocamlify: Downgrade to 0.0.1. 
Version 0.0.2 cannot be built with the latest OCaml, whereas this
version does.  This is also the version used by opam.

* gnu/packages/ocaml.scm (ocamlify): Downgrade to 0.0.1.
[arguments]: Do not use ocaml-4.02.
 2019-04-25 19:01:05 +02:00
Julien Lepiller 0705f389d1
gnu: Remove ocaml-jbuilder. 
Jbuilder is deprecated and replaced by dune.

* gnu/packages/ocaml.scm (ocaml-jbuilder): Remove variable.
(ocaml-zed, ocaml-utop): Use dune-build-system.
 2019-04-25 19:00:48 +02:00
Julien Lepiller bbe9915b30
gnu: bap: Update to 1.6.0. 
* gnu/packages/ocaml.scm (bap): Update to 1.6.0.
(ocaml-frontc): Update to 3.4.1.
(ocaml-fileutils, ocaml-cstruct, ocaml-hex, ocaml-ezjsonm, ocaml-uri):
New variables.
(ocaml4.02-fileutils, ocaml4.02-cstruct, ocaml4.02-hex,
ocaml4.02-ezjsonm, ocaml4.02-uri): Remove variables.
 2019-04-25 19:00:25 +02:00
Julien Lepiller ce9a30e6f4
gnu: Add ocaml-bigarray-compat. 
* gnu/packages/ocaml.scm (ocaml-bigarray-compat): New variable.
 2019-04-25 18:59:55 +02:00
Ricardo Wurmus cd8dce8ac4
gnu: gnome-shell: Add gdk-pixbuf+svg to inputs. 
Fixes <https://bugs.gnu.org/34124>.

* gnu/packages/gnome.scm (gnome-shell)[inputs]: Add gdk-pixbuf+svg.
[arguments]: Add the lib directory of gdk-pixbuf+svg to the LD_LIBRARY_PATH
wrapper of the gnome-shell executable.
 2019-04-25 15:30:07 +02:00
Nicolas Goaziou 92e1e0ec4b
gnu: fltk: Update to 1.3.5. 
* gnu/packages/fltk.scm (fltk): Update to 1.3.5.
 2019-04-25 14:59:16 +02:00
Ludovic Courtès 187122b902
installer: Ask for confirmation of the user passwords. 
* gnu/installer/newt/user.scm (run-user-add-page): Add #:name and
 #:home-directory and honor them.  Add call to 'confirm-password'.
 2019-04-25 12:23:54 +02:00
Ludovic Courtès 8f2b7e3cb4
installer: Ask for confirmation of the root password. 
* gnu/installer/newt/user.scm (confirm-password): New procedure.
(run-root-password-page): Add call to 'confirm-password'.
 2019-04-25 12:23:54 +02:00
Ludovic Courtès 453c976501
installer: Use FLAG-PASSWORD for the encryption passphrase confirmation. 
* gnu/installer/newt/partition.scm (prompt-luks-passwords)
<password-confirm-page>: Pass #:input-flags to 'run-input-page'.
 2019-04-25 12:23:54 +02:00
Chris Marusich 4728806185
gnu: Add python-yubikey-manager and python2-yubikey-manager. 
* gnu/packages/security-token.scm (python-yubikey-manager)
(python2-yubikey-manager): New variables.
 2019-04-24 21:08:39 -07:00
Chris Marusich 5297e97599
gnu: Add python-fido2 and python2-fido2. 
* gnu/packages/security-token.scm (python-fido2, python2-fido2): New
variables.
 2019-04-24 21:08:39 -07:00
Chris Marusich 41553c90e4
gnu: Add public-suffix-list. 
* gnu/packages/dns.scm (public-suffix-list): New variable.
 2019-04-24 21:08:39 -07:00
Chris Marusich 5f7d151c77
gnu: Add libu2f-host. 
* gnu/packages/security-token.scm (libu2f-host): New variable.
 2019-04-24 21:08:39 -07:00
Chris Marusich 404037f83d
gnu: Add python-pyscard and python2-pyscard. 
* gnu/packages/security-token.scm (python-pyscard, python2-pyscard): New
variables.
 2019-04-24 21:08:38 -07:00
Chris Marusich 968e86bd93
gnu: Add python-pyfakefs and python2-pyfakefs. 
* gnu/packages/patches/python-pyfakefs-remove-bad-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
* gnu/packages/check.scm (python-pyfakefs, python2-pyfakefs): New
  variables.
 2019-04-24 21:08:36 -07:00
Tobias Geerinckx-Rice 0406434baa
gnu: bind: Update to 9.12.4-P1 [fixes CVE-2018-5743, CVE-2019-6467]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.12.4-P1.
[source]: Add patch.
[inputs]: Add python and python-ply.
* packages/patches/bind-fix-unused-pk11-ecc-constants.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-04-25 04:42:17 +02:00
Tobias Geerinckx-Rice 9b19734c50
gnu: r-yamss: Fix typo in description. 
* gnu/packages/bioconductor.scm (r-yamss)[description]: Fix typo.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 61985d650b
gnu: python-dill: Fix typo in description. 
* gnu/packages/python-xyz.scm (python-dill)[description]: Fix typo.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 52beae7b8a
gnu, guix: Yearly ritual purging of the filesystems. 
* gnu/packages/android.scm (android-ext4-utils)[synopsis]: Fix ‘file
system’ spelling.
* gnu/packages/disk.scm (rmlint)[synopsis, description]: Likewise.
* gnu/packages/golang.scm (go-github-com-kr-fs)[synopsis, description]:
Likewise & edit for grammar.
* gnu/packages/ipfs.scm (gx, go-ipfs)[description]: Likewise.
* /gnu/packages/java.scm (java-commons-vfs)[synopsis]: Likewise.
* gnu/packages/linux.scm (fuseiso)[description]: Likewise.
(genext2fs)[synopsis, description]: Likewise.
* gnu/packages/package-management.scm (libostree)[description]: Likewise.
* gnu/packages/python-xyz.scm (python-requests-file)[description]:
Likewise & mark up.
* gnu/packages/rails.scm (ruby-with-advisory-lock)[description]:
Likewise.
* gnu/packages/ruby.scm (ruby-rerun)[description]: Likewise.
* guix/build/go-build-system.scm (setup-go-environment)<docstring>:
Likewise.
* guix/store/deduplication.scm (get-temp-link)<docstring>: Likewise.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 7ecd1761a2
gnu: bubblewrap: Edit description. 
* gnu/packages/virtualization.scm (bubblewrap)[description]: Mark up & edit.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice ac32a451fa
gnu: perl-filesys-notify-simple: Edit description. 
* gnu/packages/perl.scm (perl-filesys-notify-simple)[description]: Mark up & edit.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice ddfd529cc9
gnu: libimobiledevice: Edit description. 
* gnu/packages/libusb.scm (libimobiledevice)[description]: Fix grammar & spelling.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 2cffa2f240
gnu: libsvm: Update to 3.23. 
* gnu/packages/machine-learning.scm (libsvm): Update to 3.23.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 5ed720976a
gnu: openfst: Update to 1.7.2. 
* gnu/packages/machine-learning.scm (openfst): Update to 1.7.2.
 2019-04-25 04:42:16 +02:00
Ludovic Courtès ecb33b87aa
vm: Adjust FAT serial number code to 32-bit Guile. 
On 32-bit systems, 'string-hash' would raise an out-of-range exception
when the second argument was 2^32.

* gnu/build/vm.scm (make-iso9660-image): Pass 2^32 - 1 to 'string-hash'.
 2019-04-25 00:45:35 +02:00
Ludovic Courtès e7c7b73320
installer: Preserve order of user accounts. 
* gnu/installer/newt/user.scm (run-user-page): Add call to 'reverse'.
 2019-04-25 00:45:35 +02:00
Ludovic Courtès 5be7aecd14
vm: 'system-disk-image' no longer requires the OS to define the "/" file system. 
Previously 'guix system disk-image' would fail if the OS didn't define a
"/" file system, even though it actually overrides that file system.

* gnu/system/vm.scm (system-disk-image)[root-uuid]: Turn into a
procedure.
Call 'root-uuid' on a variant of OS with a "/" file system and inherit
from that.
 2019-04-25 00:45:35 +02:00
Ludovic Courtès 91a7c4998f
installer: Ask for the root account password. 
Fixes <https://bugs.gnu.org/35399>.

* gnu/installer/newt/user.scm (run-root-password-page): New procedure.
* gnu/installer/user.scm (users->configuration): Filter out the "root"
account.
* gnu/installer/final.scm (create-user-database): Set 'uid' field in
'user-account' form.
 2019-04-25 00:45:35 +02:00
Ludovic Courtès 399c31d40a
installer: 'run-input-page' has a new #:input-flags parameter. 
* gnu/installer/newt/page.scm (run-input-page): Add #:input-flags and
honor it.
 2019-04-25 00:45:35 +02:00
Ludovic Courtès 898677ed17
installer: Ask for user password and initialize /etc/shadow. 
Partly fixes <https://bugs.gnu.org/35399>.

* gnu/installer/user.scm (<user>)[password]: New field.
* gnu/installer/final.scm (%seed): New variable.
(integer->alphanumeric-char, random-string)
(create-user-database): New procedures.
(install-system): Call 'create-user-database'.
* gnu/installer/newt/final.scm (run-install-shell): Add #:users and pass
it to 'install-system'.
(run-final-page): Pass #:users to 'run-install-shell'.
* gnu/installer/newt/user.scm (run-user-add-page): Add password entry.
Pass its result as the 'password' field of <user>.
 2019-04-25 00:45:34 +02:00
Ludovic Courtès 3cc033f2a8
installer: Add missing 'G_' for networking message. 
* gnu/installer/newt/network.scm (wait-technology-powered): Add missing
'G_'.
 2019-04-25 00:45:34 +02:00
Ludovic Courtès 01ac0e6be1
system: Add guile-readline and guile-colorized to %BASE-PACKAGES. 
This adds pretty much nothing to the system closure size.

* gnu/system.scm (%base-packages): Add GUILE-READLINE and
GUILE-COLORIZED.
 2019-04-25 00:45:34 +02:00
Ludovic Courtès 55111549e8
install: Add node name in Castellano. 
* gnu/system/install.scm (%installation-node-names): Add "es".
 2019-04-25 00:45:34 +02:00
Danny Milosavljevic 9374cbd1fb
services: fprintd: Provide polkit policy. 
* gnu/services/authentication.scm (fprintd-service-type)[extensions]: Add
polkit-service-type.
 2019-04-24 22:21:35 +02:00
Ricardo Wurmus 190dc09e95
gnu: r-xtable: Update to 1.8-4. 
* gnu/packages/statistics.scm (r-xtable): Update to 1.8-4.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus 3a9991e4dd
gnu: r-dbplyr: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.0.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus 3cc8f66e95
gnu: r-testthat: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.1.1.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus a300ab685a
gnu: r-igraph: Update to 1.2.4.1. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.1.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus 8fc6188e4f
gnu: r-pamr: Update to 1.56.1. 
* gnu/packages/cran.scm (r-pamr): Update to 1.56.1.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus a059791f4e
gnu: r-ggforce: Update to 0.2.2. 
* gnu/packages/cran.scm (r-ggforce): Update to 0.2.2.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus 88a39cc6f5
gnu: r-rms: Update to 5.1-3.1. 
* gnu/packages/cran.scm (r-rms): Update to 5.1-3.1.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus f1c1bbc1a6
gnu: r-genetics: Update to 1.3.8.1.2. 
* gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.2.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus 378b5f4d1e
gnu: r-fields: Update to 9.7. 
* gnu/packages/cran.scm (r-fields): Update to 9.7.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus 90325bb182
gnu: r-splitstackshape: Update to 1.4.8. 
* gnu/packages/cran.scm (r-splitstackshape): Update to 1.4.8.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus d6fc8fe1fa
gnu: r-emmeans: Update to 1.3.4. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.4.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus 902905cc5b
gnu: r-sys: Update to 3.2. 
* gnu/packages/cran.scm (r-sys): Update to 3.2.
 2019-04-24 17:04:48 +02:00
Tobias Geerinckx-Rice 5f88d81fa4
gnu: zynaddsubfx: Update to 3.0.5. 
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.5.
 2019-04-24 15:02:05 +02:00
Tobias Geerinckx-Rice cda12aa949
gnu: padthv1: Update to 0.9.7. 
* gnu/packages/music.scm (padthv1): Update to 0.9.7.
 2019-04-24 14:56:08 +02:00
Tobias Geerinckx-Rice b19392f4f4
gnu: samplv1: Update to 0.9.7. 
* gnu/packages/music.scm (samplv1): Update to 0.9.7.
 2019-04-24 14:55:59 +02:00
Tobias Geerinckx-Rice e39c4800f0
gnu: synthv1: Update to 0.9.7. 
* gnu/packages/music.scm (synthv1): Update to 0.9.7.
 2019-04-24 14:55:53 +02:00
Tobias Geerinckx-Rice e4ea33cb2a
gnu: drumkv1: Update to 0.9.7. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.7.
 2019-04-24 14:47:03 +02:00
Tobias Geerinckx-Rice 5e4ac4de79
gnu: pdfpc: Update to 4.3.2. 
* gnu/packages/pdf.scm (pdfpc): Update to 4.3.2.
 2019-04-24 14:26:02 +02:00
Tobias Geerinckx-Rice 21e67d060b
gnu: gphoto2: Update to 2.5.20. 
* gnu/packages/photo.scm (gphoto2): Update to 2.5.20.
 2019-04-24 14:09:02 +02:00
Tobias Geerinckx-Rice e48c3dd990
gnu: rawtherapee: Update to 5.6. 
* gnu/packages/photo.scm (rawtherapee): Update to 5.6.
[inputs]: Add librsvg.
 2019-04-24 13:48:02 +02:00