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11406 Commits

Author SHA1 Message Date
Ricardo Wurmus a8dd960ac0
gnu: python-joblib: Disable failing tests. 
* gnu/packages/python.scm (python-joblib)[arguments]: Add phase to
disable failing tests.
 2016-10-30 18:54:41 +01:00
Ricardo Wurmus f34ef3317e
gnu: python-joblib: Update to 0.10.3. 
* gnu/packages/python.scm (python-joblib): Update to 0.10.3.
[native-inputs]: Add python-sphinx, python-docutils, python-numpydoc.
 2016-10-30 17:04:24 +01:00
Efraim Flashner bae678296a
gnu: python-waf: Download over https. 
* gnu/packages/python.scm (python-waf)[source]: Use https.
 2016-10-30 10:43:53 +02:00
Efraim Flashner 31c6bfed58
gnu: samba: Update to 4.5.1. 
* gnu/packages/samba.scm (samba): Update to 4.5.1.
 2016-10-30 10:41:31 +02:00
Leo Famulari e3c1311a5d
gnu: git: Update to 2.10.2. 
* gnu/packages/version-control.scm (git): Update to 2.10.2.
 2016-10-29 23:02:14 -04:00
Leo Famulari 593dfdc33b
Merge branch 'master' into core-updates 2016-10-29 22:16:47 -04:00
Leo Famulari 59f1298558
gnu: python-nltk: Disable the test suite. 
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-nltk to fail.

* gnu/packages/python.scm (python-nltk, python2-nltk)[arguments]:
Disable the tests.
 2016-10-29 22:16:19 -04:00
Leo Famulari 2ddbfa8c06
gnu: python-pyquery: Add inputs for test suite. 
* gnu/packages/python.scm (python-pyquery,
python2-pyquery)[native-inputs]: Add python-webob and python-webtest.
 2016-10-29 22:16:19 -04:00
宋文武 ad967bf08d
gnu: dico: Fix test failure. 
* gnu/packages/dico.scm (dico)[source]: Add 'snippet' and 'modules'.
 2016-10-30 09:53:11 +08:00
Leo Famulari 326f8285b3
gnu: python-graphql-core: Disable the test suite. 
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-graph-ql to fail.

* gnu/packages/python.scm (python-graphql-core,
python2-graphql-core)[arguments]: Disable the tests.
 2016-10-29 21:50:58 -04:00
Leo Famulari 062c7e43ed
Merge branch 'master' into core-updates 2016-10-29 21:44:44 -04:00
Leo Famulari 269d9172ff
gnu: python-pika: Add inputs for test suite. 
* gnu/packages/python.scm (python-pika, python2-pika)[native-inputs]: Add
python-pyev, python-tornado.
 2016-10-29 21:43:24 -04:00
Leo Famulari 329b4b3b69
gnu: Add python-pyev. 
* gnu/packages/python.scm (python-pyev, python2-pyev): New variables.
 2016-10-29 21:43:24 -04:00
Leo Famulari bae1871059
gnu: python-prompt-toolkit: Disable the test suite. 
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-prompt-toolkit to fail.

* gnu/packages/python.scm (python-prompt-toolkit,
python2-prompt-toolkit)[arguments]: Disable the tests.
 2016-10-29 21:43:24 -04:00
Leo Famulari 10797a0ae0
gnu: python-publicsuffix2: Disable the test suite. 
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-publicsuffix2 to fail.

* gnu/packages/python.scm (python-publicsuffix2, python2-publicsuffix2)
[arguments]: Disable the tests.
 2016-10-29 21:43:23 -04:00
Leo Famulari a2eab4223d
gnu: python-pyechonest: Remove package. 
* gnu/packages/music.scm (python-pyechonest): Remove variable.
 2016-10-29 21:43:14 -04:00
Theodoros Foradis 5b83b7b854
gnu: Add openocd. 
* gnu/packages/embedded.scm (openocd): New variable.
* gnu/packages/patches/openocd-nrf52.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
 2016-10-30 02:34:26 +01:00
David Craven 91ba693586
gnu: Add jimtcl. 
* gnu/packages/embedded.scm (jimtcl): New variable.
 2016-10-30 02:33:58 +01:00
David Craven e5e45c067d
gnu: Add libjaylink. 
* gnu/packages/embedded.scm (libjaylink): New variable.
 2016-10-30 02:33:53 +01:00
Theodoros Foradis 3d74f12e63
gnu: Add hidapi. 
* gnu/packages/libusb.scm (hidapi): New variable.
 2016-10-30 02:03:04 +02:00
Theodoros Foradis 94f36a4f5e
gnu: Add gdb-arm-none-eabi. 
* gnu/packages/embedded.scm (gdb-arm-none-eabi): New variable.
 2016-10-30 02:02:46 +02:00
Tobias Geerinckx-Rice f4fe6c991c
gnu: cups-filters: Remove duplicate ‘--with-gs-path=’ flag. 
* gnu/packages/cups.scm (cups-filters)[arguments]: Remove redundant
‘--with-gs-path=’ from #:configure-flags, left over from a botched merge.
 2016-10-30 01:15:53 +02:00
Tobias Geerinckx-Rice 4ab016e0ab
gnu: cups-filters: Update to 1.11.5. 
* gnu/packages/cups.scm (cups-filters): Update to 1.11.5.
[arguments]: Add ‘--with-gs-path=’ to #:configure-flags.
[inputs]: Add mupdf.
 2016-10-30 01:08:15 +02:00
David Craven eaf72e218e
gnu: icecat: Enable gtk3 support. 
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Add gtk+.
  [arguments]: Use --enable-default-toolkit=cairo-gtk3.
 2016-10-30 01:03:09 +02:00
David Craven 225d6c049e
gnu: sdcc: Enable ucsim. 
* gnu/packages/sdcc.scm (arguments)[configure-flags]: Add --enable-ucsim.
 2016-10-30 01:03:09 +02:00
Tobias Geerinckx-Rice 6cf626e8b3
gnu: Add yadifa. 
* gnu/packages/dns.scm (yadifa): New variable.
 2016-10-30 00:53:50 +02:00
Tobias Geerinckx-Rice 8ed14711dc
gnu: hplip: Update to 3.16.10. 
* gnu/packages/cups.scm (hplip): Update to 3.16.10.
 2016-10-30 00:47:28 +02:00
David Craven 9efa472fba
gnu: plasma-framework: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (plasma-framework): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 6c6e8b19e4
gnu: kxmlrpcclient: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kxmlrpcclient): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 19fbf93f34
gnu: kxmlgui: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kxmlgui): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 8b9b0e5eb7
gnu: kwallet: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kwallet): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven f07f67093d
gnu: ktextwidgets: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (ktextwidgets): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven b0791cf9aa
gnu: ktexteditor: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (ktexteditor): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 886d8155c1
gnu: kservice: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kservice): Update to 5.27.0.
  [native-inputs]: Add bison and flex-2.6.1.
 2016-10-29 23:51:43 +02:00
David Craven dc219cc6da
gnu: krunner: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (krunner): Update to 5.27.0.
  [arguments]: Return #t.
 2016-10-29 23:51:43 +02:00
David Craven 3a1e972d50
gnu: kpeople: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kpeople): Update to 5.27.0.
  [arguments]: Return #t.
 2016-10-29 23:51:43 +02:00
David Craven 33fa4658bd
gnu: kparts: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kparts): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 59cb98e135
gnu: knotifyconfig: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (knotifyconfig): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 7064ad3fca
gnu: knewstuff: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (knewstuff): Update to 5.27.0.
  [arguments]: Return #t.
 2016-10-29 23:51:43 +02:00
David Craven ed3634e756
gnu: kio: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kio): Update to 5.27.0.
  [arguments]: Return #t.
 2016-10-29 23:51:43 +02:00
David Craven 89d522a360
gnu: kinit: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kinit): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven c8ddc56e6c
gnu: kiconthemes: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kiconthemes): Update to 5.27.0.
  [arguments]: Return #t.
 2016-10-29 23:51:43 +02:00
David Craven 2b677becbd
gnu: kglobalaccel: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kglobalaccel): Update to 5.27.0.
  [inputs]: Add kservice.
 2016-10-29 23:51:43 +02:00
David Craven 25ebad65bf
gnu: kemoticons: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kemoticons): Update to 5.27.0.
  [arguments]: Return #t.
 2016-10-29 23:51:43 +02:00
David Craven aa072198c6
gnu: kdesu: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kdesu): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 9caef00bd1
gnu: kdesignerplugin: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kdesignerplugin): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 8e963d123c
gnu: kded: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kded): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 46e1ac0be8
gnu: kdeclarative: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kdeclarative): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 986d0eae65
gnu: kconfigwidgets: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kconfigwidgets): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 8ed8a9f53a
gnu: kcmutils: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kcmutils): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven b58e9bea2e
gnu: kbookmarks: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kbookmarks): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 4902494f6d
gnu: kactivities-stats: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kactivities-stats): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 04fb93e0e3
gnu: kactivities: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kactivities): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 442f2beae0
gnu: baloo: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (baloo): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven f7c2026fea
gnu: kunitconversion: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kunitconversion): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 84164f7ff8
gnu: kpty: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kpty): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 0e6c305748
gnu: kpackage: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kpackage): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 7507399846
gnu: knotifications: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (knotifications): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 4a9f3bf33b
gnu: kjobwidgets: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kjobwidgets): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 2d64fdb157
gnu: kimageformats: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kimageformats): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 3f34662b12
gnu: kfilemetadata: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kfilemetadata): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven f5dae6aec1
gnu: kdoctools: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kdoctools): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 075eeb355b
gnu: kcrash: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kcrash): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 17b5144a18
gnu: kcompletion: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kcompletion): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 62dee732f4
gnu: kauth: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kauth): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 01fc411d96
gnu: threadweaver: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (threadweaver): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 71b37f7ab6
gnu: sonnet: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (sonnet): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 6ad3befef2
gnu: solid: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (solid): Update to 5.27.0.
  [native-inputs]: Add flex-2.6.1.
 2016-10-29 23:51:43 +02:00
David Craven beb21382d3
gnu: oxygen-icons: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (oxygen-icons): Update to 5.27.0.
  [native-inputs]: Add fdupes.
 2016-10-29 23:51:43 +02:00
David Craven c3fefc81ce
gnu: networkmanager-qt: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (networkmanager-qt): Update to 5.27.0
  and fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 48e789daa8
gnu: modemmanager-qt: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (modemmanager-qt): Update to 5.27.0
  and fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 48311df949
gnu: kwindowsystem: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 5a3f070931
gnu: kwidgetsaddons: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kwidgetsaddons): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 3dfcaf33c8
gnu: kwayland: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kwayland): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven a7ec016cd5
gnu: kplotting: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kplotting): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 701d7a9b50
gnu: kitemviews: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kitemviews): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 110e4bea7a
gnu: kitemmodels: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kitemmodels): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven bdf84c9e2f
gnu: kidletime: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kidletime): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven e751556a14
gnu: ki18n: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (ki18n): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven ee6cebf6a9
gnu: kguiaddons: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kguiaddons): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven ce45f9ef7b
gnu: kdnssd: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kdnssd): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven e361ff6a2e
gnu: kdbusaddons: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kdbusaddons): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven b69b81ca2e
gnu: kcoreaddons: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kcoreaddons): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven a6fec16590
gnu: kconfig: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kconfig): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 78fc358f3e
gnu: kcodecs: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kcodecs): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven ea95b701dc
gnu: karchive: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (karchive): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 8fea1a2378
gnu: kapidox: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (kapidox): Update to 5.27.0 and fix
  indentation.
 2016-10-29 23:51:43 +02:00
David Craven 02dc8847c8
gnu: breeze-icons: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (breeze-icons): Update to 5.27.0.
  [native-inputs]: Add fduptes and libxml2.
  [arguments]: Disable tests.
 2016-10-29 23:51:43 +02:00
David Craven bfa96eba56
gnu: bluez-qt: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (bluez-qt): Update to 5.27.0 and
  fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 5eb1b33b6b
gnu: attica: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (attica): Update to 5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven 84dee85291
gnu: phonon: Fix indentation. 
* gnu/packages/kde-frameworks.scm (phonon): Fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven bd0fc238f8
gnu: kpmcore: Fix indentation. 
* gnu/packages/kde-frameworks.scm (kpmcore): Fix indentation.
 2016-10-29 23:51:43 +02:00
David Craven 443a60aaae
gnu: gpgmepp: Update to 16.08.2. 
* gnu/packages/kde-frameworks (gpgmepp): Update to 16.08.2.
 2016-10-29 23:51:43 +02:00
David Craven 1c484e980f
gnu: extra-cmake-modules: Update to 5.27.0. 
* gnu/packages/kde-frameworks.scm (extra-cmake-modules): Update to
  5.27.0.
 2016-10-29 23:51:43 +02:00
David Craven b68bf48af9
gnu: Add flex-2.6.1. 
* gnu/packages/flex.scm (flex-2.6.1): New variable.
 2016-10-29 23:51:43 +02:00
Alex Vong ee5fb7ee50
gnu: Add python2-rpython. 
* gnu/packages/python.scm (python2-rpython): New variable.
 2016-10-29 23:49:05 +02:00
Efraim Flashner 8f210c0e0e
gnu: ccache: Update to 3.3.3. 
* gnu/packages/ccache.scm (ccache): Update to 3.3.3.
 2016-10-30 00:05:26 +03:00
Efraim Flashner 7dd55dfeca
gnu: python-waf: Update to 1.9.5. 
* gnu/packages/python.scm (python-waf): Update to 1.9.5.
[arguments]: Shorten custom build phase.
[source]: Use http.
[home-page]: Use http.
 2016-10-30 00:05:13 +03:00
Efraim Flashner 603d55de4a
gnu: ffmpeg: Update to 3.2. 
* gnu/packages/video.scm (ffmpeg): Update to 3.2.
 2016-10-29 22:16:44 +03:00
Efraim Flashner 0b37c4cda7
gnu: vapoursynth: Update to 35. 
* gnu/packages/video.scm (vapoursynth): Update to 35.
 2016-10-29 22:16:44 +03:00
Efraim Flashner 812de5bf1e
gnu: offlineimap: Update to 7.0.9. 
* gnu/packages/mail.scm (offlineimap): Update to 7.0.9.
 2016-10-29 22:16:43 +03:00
Efraim Flashner 4d73cb5441
gnu: chess: Update to 6.2.4. 
* gnu/packages/games.scm (chess): Update to 6.2.4.
[home-page]: Use https.
 2016-10-29 22:16:42 +03:00
Marius Bakke a7e75125c8
gnu: vim: Update to 8.0.0054. 
* gnu/packages/vim.scm (vim): Update to 8.0.0054.
 2016-10-29 20:04:57 +01:00
Tobias Geerinckx-Rice dadf6622e9
gnu: borg: Update to 1.0.8. 
* gnu/packages/backup.scm (borg): Update to 1.0.8.
 2016-10-29 14:24:51 +02:00
Tobias Geerinckx-Rice 58c4f11e43
gnu: Add radeontop. 
* gnu/packages/linux.scm (radeontop): New variable.
 2016-10-29 14:19:01 +02:00
Mark H Weaver b8df914f37
gnu: linux-libre: Update to 4.8.5. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.5.
 2016-10-28 20:11:20 -04:00
Mark H Weaver a56b3229f4
gnu: linux-libre@4.4: Update to 4.4.28. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.28.
 2016-10-28 20:09:02 -04:00
Eric Bavier fba78d18c2
gnu: mumps: Upgrade to 5.0.2. 
* gnu/packages/maths.scm (mumps): Upgrade to 5.0.2.
[arguments]: Properly return boolean from install phase.
 2016-10-28 15:53:32 -05:00
Marius Bakke a9afb956b3
gnu: vim: Update to 8.0.0051. 
* gnu/packages/vim.scm (vim): Update to 8.0.0051.
[source]: Change to github release archive.
 2016-10-28 20:55:09 +01:00
Leo Famulari 0df955401f
Merge branch 'master' into core-updates 2016-10-28 13:59:32 -04:00
Leo Famulari 044ac8d294
gnu: python-twobitreader: Update to 3.1.4. 
* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader):
Update to 3.1.4.
 2016-10-28 13:59:11 -04:00
Leo Famulari 900fb8d005
gnu: python-twobitreader: Disable the test suite. 
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-twobitreader to fail.

* gnu/packages/bioinformatics.scm (python-twobitreader,
python2-twobitreader)[arguments]: Disable the tests.
 2016-10-28 13:59:11 -04:00
Roel Janssen ed8bc028f7
gnu: Add emacs-org-trello. 
* gnu/packages/emacs.scm (emacs-org-trello): New variable.
 2016-10-28 19:50:32 +02:00
Leo Famulari a6447e7fb6
Merge branch 'master' into core-updates 2016-10-28 13:40:17 -04:00
Leo Famulari e359b31a60
gnu: python-wsgiproxy2: Disable the test suite. 
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2)[arguments]:
Disable the tests.
 2016-10-28 13:39:38 -04:00
Leo Famulari 67fd4a12cb
gnu: python-beautifulsoup4: Update to 4.5.1. 
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
Update to 4.5.1.
 2016-10-28 13:39:38 -04:00
Leo Famulari 5f37f0b66e
gnu: python-beautifulsoup4: Run the test suite. 
* gnu/packages/python.scm (python-beautifulsoup4)[arguments]: Add field
run python-2 -> python-3 conversion script and test suite.
(python2-beautifulsoup4)[arguments]: Specify use of python-2.
 2016-10-28 13:39:37 -04:00
Leo Famulari 92c3ef2cf3
gnu: python-feedparser: Disable the test suite. 
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-feedparser to fail.

* gnu/packages/python.scm (python-feedparser, python2-feedparser)[arguments]:
Disable the tests.
 2016-10-28 13:39:37 -04:00
Leo Famulari 95bff4f697
gnu: libwebp: Fix CVE-2016-9085. 
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libwebp)[source]: Use it.
 2016-10-28 13:39:37 -04:00
Leo Famulari b2ed5ca7aa
gnu: libwebp: Update to 0.5.1. 
* gnu/packages/image.scm (libwebp): Update to 0.5.1.
 2016-10-28 13:39:33 -04:00
Roel Janssen 36e5d10387
gnu: Add emacs-request. 
* gnu/packages/emacs.scm (emacs-request): New variable.
 2016-10-28 19:29:35 +02:00
Thomas Danckaert fc381a3325
gnu: Add qwt. 
* gnu/packages/qt.scm (qwt): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-28 14:47:36 +01:00
宋文武 aa98b3b273
gnu: gxmessage: Don't install 'icon-theme.cache'. 
* gnu/packages/gxmessage.scm (gxmessage)[arguments]: Add
'skip-gtk-update-icon-cache' phase.
[native-inputs]: Remove gtk+:bin.
 2016-10-28 21:04:11 +08:00
Mark H Weaver 3d82676919
Merge branch 'master' into core-updates 2016-10-27 20:21:26 -04:00
Efraim Flashner f9a65318dd
gnu: python-parse: Use 'modify-phases' syntax. 
* gnu/packages/python.scm (python-parse)[arguments]: Use 'modify-phases'
syntax.
 2016-10-27 23:29:56 +03:00
Efraim Flashner aa6c09ed71
gnu: python-parse: Fix failing test. 
* gnu/packages/python.scm (python-parse)[origin]: Add patch.
* gnu/packages/patches/python-parse-too-many-fields.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-10-27 23:28:07 +03:00
Efraim Flashner d18c69aa2a
gnu: python-pytest-django: Add missing test input. 
* gnu/packages/django.scm (python-pytest-django)[native-inputs]: Add
python-django.
 2016-10-27 22:27:31 +03:00
Efraim Flashner fa7cd33378
gnu: python-django-filter: Add inputs for tests. 
* gnu/packages/django.scm (python-django-filter)[native-inputs]: Add
python-django, python-mock.
 2016-10-27 22:18:30 +03:00
Efraim Flashner 13c4d8746b
gnu: python-wtforms: Skip optional tests. 
* gnu/packages/python.scm (python-wtforms)[arguments]: Add a phase
preventing tests from failing when optional tests aren't run.
 2016-10-27 22:13:22 +03:00
Efraim Flashner b6e0804953
gnu: lightning: Add missing input. 
* gnu/packages/assembly.scm (lightning)[native-inputs]: Add zlib.
 2016-10-27 21:13:05 +03:00
Roel Janssen 7500e42b3e
gnu: Add r-mutationalpatterns. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
 2016-10-27 20:07:05 +02:00
Efraim Flashner 377bfbc1f8
gnu: gxmessage: Add missing input. 
* gnu/packages/gxmessage.scm (gxmessage)[native-inputs]: Add gtk+3-bin.
 2016-10-27 21:03:08 +03:00
Efraim Flashner 327be74720
gnu: jasper: Updat eto 1.900.16. 
* gnu/packages/image.scm (japer): Update to 1.900.16.
 2016-10-27 20:14:17 +03:00
Kei Kebreau 233fbb6102
gnu: windowmaker: Add support for more image formats. 
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add giflib, libpng,
and libtiff.
 2016-10-27 10:51:05 -04:00
Roel Janssen b5ce25cc0e
gnu: r: Use uname from Guix 
* gnu/packages/statistics.scm (r): Use uname from Guix.
 2016-10-27 16:37:24 +02:00
Marius Bakke 6178274d19
gnu: python-urllib3: Update to 1.18.1. 
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1.
[home-page]: Use https URL.
 2016-10-27 14:03:07 +01:00
Ludovic Courtès 631fda7e90
gnu: Add mdadm-static. 
* gnu/packages/linux.scm (mdadm-static): New variable.
 2016-10-27 13:48:52 +02:00
Efraim Flashner 7d876afdd8
gnu: libmikmod: Update to 3.3.10. 
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
 2016-10-27 12:23:04 +03:00
Efraim Flashner 355d8e873b
gnu: sdl2: Update to 2.0.5. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
 2016-10-27 12:23:04 +03:00
Efraim Flashner 5d5790ce44
gnu: Use 'https' for libsdl urls. 
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net)
(sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https.
[home-page]: Use https.
 2016-10-27 12:23:03 +03:00
Tobias Geerinckx-Rice 483b7ce7ae
gnu: mcelog: Update to 144. 
* gnu/packages/linux.scm (mcelog): Update to 144.
 2016-10-27 11:03:34 +02:00
Tobias Geerinckx-Rice 6270769dc2
gnu: btrfs-progs: Update to 4.8.2. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
 2016-10-27 11:03:34 +02:00
Mike Gerwitz cd9ed6c1cb
gnu: gnupg: Add support for pcsc-lite. 
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite.
[arguments]: Rename phase 'patch-config-files' to 'patch-paths'.  Patch
`scd/scdaemon.c' with absolute path of libpcsclite.so.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-27 09:56:54 +01:00
Mike Gerwitz a6b256affc
gnu: Add pcsc-lite. 
* gnu/packages/security-token.scm (pcsc-lite): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-27 09:56:52 +01:00
ng0 8888fe826c
gnu: Add dbacl. 
* gnu/packages/textutils.scm (dbacl): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-27 11:42:39 +03:00
Efraim Flashner 5fd84e288c
gnu: valgrind: Use 'modify-phases' syntax. 
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases'
syntax.
 2016-10-27 11:42:38 +03:00
Efraim Flashner e68168eb87
gnu: valgrind: Update to 3.12.0. 
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
 2016-10-27 11:42:29 +03:00
Hartmut Goebel 49a531f545
gnu: python-pathlib2: Add comment. 
As suggested by Efraim Flashner.

* gnu/packages/python.scm (python-pathlib2): Add comment.
 2016-10-27 10:09:10 +02:00
Leo Famulari f02fb6dd6b
gnu: btrfs-progs: Update to 4.8.2. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
 2016-10-27 00:43:37 -04:00
Leo Famulari 9045c086df
gnu: blender: Update to 2.78a. 
* gnu/packages/graphics.scm (blender): Update to 2.78a.
 2016-10-27 00:30:47 -04:00
Leo Famulari fad8bf977d
gnu: python-s3transfer: Run the tests. 
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer)[arguments]:
Use python-nose to run the tests.
[native-inputs]: Add python-mock and python-nose.
 2016-10-26 21:41:28 -04:00
Leo Famulari 522fc32ebd
gnu: shotwell: Update to 0.25.0. 
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.
[inputs]: Add gcr.
 2016-10-26 20:10:05 -04:00
Leo Famulari 30b1267830
gnu: vdirsyncer: Update to 0.14.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
 2016-10-26 19:56:15 -04:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Leo Famulari a19da40630
gnu: perl-www-curl: Fix build failure. 
* gnu/packages/patches/perl-www-curl-remove-symbol.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-www-curl)[source]: Use it.
 2016-10-26 18:44:16 -04:00
ng0 5d73e30000
gnu: Add lci. 
* gnu/packages/lolcode.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-26 20:39:27 +03:00
Christopher Allan Webber 8caeb11772
gnu: Add autossh. 
* gnu/packages/ssh.scm (autossh): New variable.
 2016-10-26 11:22:17 -05:00
Ricardo Wurmus aba6463975
gnu: r: Update to 3.3.1. 
* gnu/packages/statistics.scm (r): Update to 3.3.1.
 2016-10-26 18:14:17 +02:00
Ricardo Wurmus a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus fd54f65e72
gnu: r-r-utils: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus 89242ea47f
gnu: r-irlba: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 4f2ebc16ce
gnu: r-codetools: Update to 0.2-15. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus cf738e961e
gnu: r-snow: Update to 0.4-2. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 41bc22a7de
gnu: r-backports: Update to 1.0.4. 
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 72263db73d
gnu: r-foreign: Update to 0.8-67. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 130410d941
gnu: r-cluster: Update to 2.0.5. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e7622804aa
gnu: r-acepack: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus bff4dc6324
gnu: r-r6: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e0a9093139
gnu: r-evaluate: Update to 0.10. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 2d9da70bbe
gnu: r-reshape2: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus c2a9e99134
gnu: r-stringi: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 9e087a1fde
gnu: r-colorspace: Update to 1.2-7. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus e1c2b7e2e1
gnu: r-jsonlite: Update to 1.1. 
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 2ffcd6607b
gnu: r-curl: Update to 2.2. 
* gnu/packages/web.scm (r-curl): Update to 2.2.
 2016-10-26 16:23:26 +02:00
Ricardo Wurmus a46cc723ff
gnu: r-seqinr: Update to 3.3-3. 
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
 2016-10-26 16:23:26 +02:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 7397cd9e3f
gnu: armadillo: Update to 7.500.0. 
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 8e1369f19a
gnu: r-rmarkdown: Update to 1.1. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus c70271ec48
gnu: bioperl-minimal: Update to 1.7.0. 
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
 2016-10-26 16:23:24 +02:00
Marius Bakke 39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a. 
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.

This is a follow-up to 47a04fca99.

* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
 2016-10-26 15:03:42 +01:00
ng0 b2a2232c33
gnu: python-certifi: Update to 2016.8.31. 
* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-26 14:31:16 +03:00
Marius Bakke 07b1fb8675
gnu: security-token: Use 'license:' prefix. 
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
 2016-10-26 11:00:58 +01:00
Marius Bakke f9c339603d
gnu: yubico.scm: Rename to security-token.scm. 
* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2016-10-26 10:45:49 +01:00
Marius Bakke 7a6213cbd7
gnu: offlineimap: Install documentation. 
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
 2016-10-26 10:45:49 +01:00
Marius Bakke d2a9b531fb
gnu: notmuch: Update to 0.23.1. 
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
 2016-10-26 10:45:49 +01:00
Efraim Flashner 8f5f6c922f
gnu: vlc: Add x265 support. 
* gnu/packages/video.scm (vlc)[inputs]: Add x265.
 2016-10-26 12:19:19 +03:00
Efraim Flashner e3cb00d210
gnu: gst-plugins-bad: Add x265 support. 
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
 2016-10-26 12:19:18 +03:00
Efraim Flashner d505801a06
gnu: ffmpeg: Add x265 support. 
* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
 2016-10-26 12:19:18 +03:00
Efraim Flashner 7bc7ffc243
gnu: Add x265. 
* gnu/packages/video.scm (x265): New variable.
 2016-10-26 12:19:18 +03:00
ng0 1df790d50d
gnu: Add psyclpc. 
* gnu/packages/psyc.scm (psyclpc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-26 11:29:35 +03:00
Ludovic Courtès 19262a718e
gnu: opensmtpd: Fix 'license' field. 
* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
 2016-10-26 10:19:18 +02:00
Ricardo Wurmus 59198f8fff
gnu: r-genomationdata: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
 2016-10-26 09:28:23 +02:00
Ricardo Wurmus e357bec836
gnu: r-bamsignals: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
 2016-10-26 09:28:23 +02:00
Ricardo Wurmus 53ca52f013
gnu: r-rhtslib: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
 2016-10-26 09:28:23 +02:00
Ricardo Wurmus da22da862b
gnu: r-zlibbioc: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
 2016-10-26 09:28:22 +02:00
Ricardo Wurmus 809251e164
gnu: r-motifrg: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
 2016-10-26 09:28:22 +02:00
Ricardo Wurmus 21d6c7a3e1
gnu: r-seqlogo: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
 2016-10-26 09:28:22 +02:00
Ricardo Wurmus 51c3c4900f
gnu: r-genomation: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
 2016-10-26 09:28:21 +02:00
Ricardo Wurmus e92dd6f5e0
gnu: r-seqpattern: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
 2016-10-26 09:28:21 +02:00
Ricardo Wurmus acf6f7e0c3
gnu: r-impute: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
 2016-10-26 09:28:21 +02:00
Ricardo Wurmus 3d74c04451
gnu: r-bsgenome: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
 2016-10-26 09:28:20 +02:00
Ricardo Wurmus 30ec4de738
gnu: r-topgo: Update to 2.26.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0.
[propagated-inputs]: Add r-dbi.
 2016-10-26 09:28:20 +02:00
Ricardo Wurmus 3587b464fc
gnu: r-graph: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
 2016-10-26 09:28:19 +02:00
Ricardo Wurmus d1b1587cad
gnu: r-go-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
 2016-10-26 09:28:19 +02:00
Ricardo Wurmus b17aac083e
gnu: r-genomicfeatures: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
 2016-10-26 09:28:18 +02:00
Ricardo Wurmus 6a45fd9aea
gnu: r-rtracklayer: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
 2016-10-26 09:28:18 +02:00
Ricardo Wurmus 4ab32f0cd6
gnu: r-genomicalignments: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
 2016-10-26 09:28:18 +02:00
Ricardo Wurmus 08da08d296
gnu: r-summarizedexperiment: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
 2016-10-26 09:28:17 +02:00
Ricardo Wurmus c0ccef41ae
gnu: r-rsamtools: Update to 1.26.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
 2016-10-26 09:28:17 +02:00
Ricardo Wurmus 47d39b6e7a
gnu: r-biostrings: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
 2016-10-26 09:28:17 +02:00
Ricardo Wurmus 89559a124e
gnu: r-biocparallel: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
 2016-10-26 09:28:16 +02:00
Ricardo Wurmus 9405333186
gnu: r-biomart: Update to 2.30.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
 2016-10-26 09:28:16 +02:00
Ricardo Wurmus e45dc05781
gnu: r-annotationdbi: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
 2016-10-26 09:28:16 +02:00
Ricardo Wurmus 464870caf7
gnu: r-biobase: Update to 2.34.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
 2016-10-26 09:28:15 +02:00
Ricardo Wurmus 92a740afac
gnu: r-genomicranges: Update to 1.26.1. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
 2016-10-26 09:28:15 +02:00
Ricardo Wurmus 1d048589ca
gnu: r-xvector: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
 2016-10-26 09:28:14 +02:00
Ricardo Wurmus 753bc32b8e
gnu: r-limma: Update to 3.30.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
 2016-10-26 09:28:14 +02:00
Ricardo Wurmus 37d96f1dde
gnu: r-variantannotation: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
 2016-10-26 09:28:14 +02:00
Ricardo Wurmus 5e48005fa9
gnu: r-edger: Update to 3.16.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
 2016-10-26 09:28:14 +02:00
Ricardo Wurmus dece310a25
gnu: r-genomeinfodb: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
 2016-10-26 09:28:13 +02:00
Ricardo Wurmus 7f354dafb1
gnu: r-iranges: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
 2016-10-26 09:28:13 +02:00
Ricardo Wurmus b120c5f3a2
gnu: r-s4vectors: Update to 0.12.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
 2016-10-26 09:28:13 +02:00
Ricardo Wurmus 22c5d736af
gnu: r-dnacopy: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
 2016-10-26 09:28:12 +02:00
Ricardo Wurmus 5c7b04e0c3
gnu: r-biocinstaller: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
 2016-10-26 09:28:12 +02:00
Ricardo Wurmus f0b297e17b
gnu: r-biocgenerics: Update to 0.20.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
 2016-10-26 09:28:11 +02:00
Ricardo Wurmus c9b5046a18
gnu: r-grohmm: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
 2016-10-26 09:28:11 +02:00
Ricardo Wurmus 1265d3877b
gnu: r-systempiper: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
 2016-10-26 09:28:11 +02:00
Ricardo Wurmus b87b41a74d
gnu: r-shortread: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
 2016-10-26 09:28:10 +02:00
Ricardo Wurmus ae6899b683
gnu: r-gostats: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
 2016-10-26 09:28:10 +02:00
Ricardo Wurmus 816599c1e7
gnu: r-category: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
 2016-10-26 09:28:10 +02:00
Ricardo Wurmus 558d02c361
gnu: r-gseabase: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
 2016-10-26 09:28:09 +02:00
Ricardo Wurmus 700c780dcf
gnu: r-rbgl: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
 2016-10-26 09:28:09 +02:00
Ricardo Wurmus 55cd914c3d
gnu: r-annotationforge: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0.
[propagated-inputs]: Add r-rcurl.
 2016-10-26 09:28:09 +02:00
Ricardo Wurmus e1db8dd813
gnu: r-deseq2: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
 2016-10-26 09:28:08 +02:00
Ricardo Wurmus 1e66e71921
gnu: r-genefilter: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
 2016-10-26 09:28:08 +02:00
Ricardo Wurmus 6faa2a48f0
gnu: r-geneplotter: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
 2016-10-26 09:28:08 +02:00
Ricardo Wurmus 9beba74f66
gnu: r-annotate: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
 2016-10-26 09:28:07 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth. 
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
 2016-10-26 09:28:07 +02:00
Ricardo Wurmus f9875807e8
gnu: emacs-emms-player-mpv: Update to 0.0.10. 
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
 2016-10-26 09:28:07 +02:00
Leo Famulari 6c18c4f603
gnu: elfutils: Update to 0.167. 
* gnu/packages/elf.scm (elfutils): Update to 0.167.
 2016-10-25 22:11:59 -04:00
Leo Famulari 3de764f7a7
gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447]. 
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
 2016-10-25 16:33:13 -04:00
Kei Kebreau 47a04fca99
gnu: mupdf: Fix CVE-2016-8674. 
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
 2016-10-25 12:50:50 -04:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries. 
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-25 14:56:37 +02:00
Mark H Weaver e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35.  Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-24 22:53:18 -04:00
Mark H Weaver c4a667bfa5
gnu: Add missing module import to (gnu packages gl). 
This is a followup to commit f1267c872f.

* gnu/packages/gl.scm: Import (gnu packages).
 2016-10-24 22:45:38 -04:00
Mark H Weaver f1267c872f
gnu: mesa: Fix 'wayland-egl-symbols-check' on MIPS. 
* gnu/packages/patches/mesa-wayland-egl-symbols-check-mips.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Add patch when building on MIPS.
 2016-10-24 22:28:32 -04:00
Leo Famulari 19a65e7c8c
gnu: perl-eval-closure: Update to 0.14. 
* gnu/packages/perl.scm (perl-eval-closure): Update to 0.14.
 2016-10-24 17:29:25 -04:00
Thomas Danckaert d91025e3d0
gnu: Add coda. 
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2. 
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:05:20 +02:00
Amirouche 3b5783fcd9
gnu: Add guile-bytestructures 
* gnu/packages/guile.scm (guile-bytestructures): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 22:51:52 +02:00
Leo Famulari 4691428059
gnu: twolame: Make the test suite compatible with Perl 5.24. 
* gnu/packages/audio.scm (twolame)[source]: Add snippet to fix test.
 2016-10-24 16:19:25 -04:00
Efraim Flashner 405be8dceb
gnu: efl: Update to 1.18.2. 
* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
 2016-10-24 22:01:00 +03:00
Kei Kebreau c201b28bfa
gnu: red-eclipse: Update to 1.5.6. 
* gnu/packages/games.scm (red-eclipse): Update to 1.5.6.
[arguments]: Adjust phases.
 2016-10-24 13:25:39 -04:00
ng0 9c798f9036
gnu: Add whois. 
* gnu/packages/networking.scm (whois): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-24 17:40:53 +01:00
宋文武 bd1b1e0517
gnu: gnumeric: Use 'glib-or-gtk-build-system'. 
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/gnome.scm (gnumeric)[build-systems]: Switch to
GLIB-OR-GTK-BUILD-SYSTEM.
 2016-10-24 19:19:34 +08:00
Leo Famulari 02cfea6627
gnu: musl: Fix CVE-2016-8859. 
* gnu/packages/patches/musl-CVE-2016-8859.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/musl.scm (musl)[source]: Use it.
 2016-10-23 18:08:17 -04:00
Kei Kebreau 8e3017cc65
gnu: windowmaker: Update to 0.95.7. 
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.7.
 2016-10-23 17:52:28 -04:00
Arun Isaac 0f6b6cb996
gnu: gajim: Update to 0.16.6. 
* gnu/packages/messaging.scm (gajim): Update to 0.16.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-23 17:40:50 -04:00
Arun Isaac d6465efaa9
gnu: gajim: License is "version 3 only". 
* gnu/packages/messaging.scm (gajim)[license]: Change to GPL3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-23 17:40:50 -04:00
ng0 2dfa90721d
gnu: weechat: Update to 1.6. 
* gnu/packages/irc.scm (weechat): Update to 1.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-23 17:10:22 -04:00
Leo Famulari ef73acd30d
gnu: diffoscope: Disable failing test. 
* gnu/packages/package-management.scm (diffoscope)[arguments]: Add
'disable-failing-test' phase.
 2016-10-23 17:05:09 -04:00
Leo Famulari 1bafad5661
gnu: audit: Use GnuTLS instead of OpenSSL. 
* gnu/packages/admin.scm (audit)[inputs]: Replace openssl with gnutls.
 2016-10-23 16:38:21 -04:00
Mark H Weaver 93cb98d481
gnu: icu4c: On MIPS, pass --with-data-packaging=archive to configure. 
* gnu/packages/icu4c.scm (icu4c)[arguments]: On MIPS, pass
"--with-data-packaging=archive" to configure.
 2016-10-23 14:18:26 -04:00
Mark H Weaver ca0635b4ba
Merge branch 'master' into core-updates 2016-10-23 14:16:39 -04:00
Danny Milosavljevic 903276d066
gnu: Add python-flask-sqlalchemy. 
* gnu/packages/python.scm (python-flask-sqlalchemy): New variable.
 2016-10-23 19:41:11 +02:00
Danny Milosavljevic 31288222d4
gnu: Add python-flask-basicauth. 
* gnu/packages/python.scm (python-flask-basicauth): New variable.
 2016-10-23 19:41:10 +02:00
Danny Milosavljevic 999d964d64
gnu: Add python-flask-restful. 
* gnu/packages/python.scm (python-flask-restful): New variable.
 2016-10-23 19:31:39 +02:00
Danny Milosavljevic 0990edfecb
gnu: Add python-aniso8601. 
* gnu/packages/python.scm (python-aniso8601): New variable.
 2016-10-23 19:31:39 +02:00
Rene Saavedra 04ce840a82
gnu: Add bluefish. 
* gnu/packages/gnome.scm (bluefish): New variable.
 2016-10-23 19:26:30 +02:00
Tobias Geerinckx-Rice 373e765ec3
gnu: openconnect: Update to 7.07. 
* gnu/packages/vpn.scm (openconnect): Update to 7.07.
 2016-10-23 16:33:04 +02:00
Tobias Geerinckx-Rice bdc74f07c3
gnu: weex: Use ‘modify-phases’. 
* gnu/packages/ftp.scm (weex): Use the ‘modify-phases’ syntax.
 2016-10-23 16:33:04 +02:00
Ricardo Wurmus 5f5b57681c
gnu: Add guitarix-lv2. 
* gnu/packages/audio.scm (guitarix-lv2): New variable.
 2016-10-23 15:47:35 +02:00
Ricardo Wurmus 84d53724ba
gnu: Add mod-utilities. 
* gnu/packages/music.scm (mod-utilities): New variable.
 2016-10-23 15:47:35 +02:00
Ricardo Wurmus 3d4b1bb9a1
gnu: Add jalv-select. 
* gnu/packages/music.scm (jalv-select): New variable.
 2016-10-23 15:47:35 +02:00
Ricardo Wurmus c2c9e74891
gnu: Add mod-host. 
* gnu/packages/music.scm (mod-host): New variable.
 2016-10-23 15:47:35 +02:00
Efraim Flashner 875dc49b00
gnu: jasper: Update to 1.900.13. 
* gnu/packages/image.scm (jasper): Update to 1.900.13.
[arguments]: Build with -std=c99 support.
 2016-10-23 16:32:04 +03:00
ng0 5cb7974109
gnu: Add libpsyc. 
* gnu/packages/psyc.scm (libpsyc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-23 16:32:03 +03:00
ng0 3a14b2bcf6
gnu: Add perl-net-psyc. 
* gnu/packages/psyc.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-23 16:32:03 +03:00
Ricardo Wurmus 860eda621b
gnu: vmpk: Remove package. 
The vmpk package has been broken for a while and attempts to fix it have
failed.  The package "jack-keyboard" offers similar features.

* gnu/packages/music.scm (vmpk): Remove variable.
 2016-10-23 15:06:36 +02:00
Ricardo Wurmus 1a0633e79b
gnu: Add supertuxkart. 
* gnu/packages/games.scm (supertuxkart): New variable.
 2016-10-23 15:05:19 +02:00
Efraim Flashner 9ba88890f7
gnu: gambit-c: Update to 4.8.5. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.5.
[source]: Update source tarball name.
 2016-10-23 14:37:36 +03:00
Efraim Flashner 27668c79de
gnu: gambit-c: Use 'modify-phases' syntax. 
* gnu/packages/scheme.scm (gambit-c)[arguments]: Use 'modify-phases'
syntax.
 2016-10-23 14:37:36 +03:00
Efraim Flashner 71dcdaf31f
gnu: gambit-c: Update to 4.7.9. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.7.9.
 2016-10-23 14:37:36 +03:00
Efraim Flashner fb685df8f8
gnu: bigloo: Use 'modify-phases' syntax. 
* gnu/packages/scheme.scm (bigloo)[arguments]: Use 'modify-phases' syntax.
 2016-10-23 14:37:36 +03:00
Efraim Flashner 04014de6f5
gnu: hop: Use 'modify-phases' syntax. 
* gnu/packages/scheme.scm (hop)[arguments]: Use 'modify-phases' syntax.
 2016-10-23 14:37:35 +03:00
Efraim Flashner eccd1d24c9
gnu: hop: Update to 2.5.1. 
* gnu/packages/scheme.scm (hop): Update to 2.5.1.
[source]: Remove patch.
* gnu/packages/patches/hop-bigloo-4.0b.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-23 14:37:28 +03:00
Leo Famulari 5ed7f28da5
gnu: mpg321: Update to 0.3.2. 
* gnu/packages/mp3.scm (mpg321): Update to 0.3.2.
 2016-10-23 05:01:02 -04:00
Leo Famulari d78b652c16
gnu: mpg123: Update to 1.23.8. 
* gnu/packages/mp3.scm (mpg123): Update to 1.23.8.
 2016-10-23 04:55:26 -04:00
Efraim Flashner 844f4f6e62
gnu: beast: Disable parallel-build. 
* gnu/packages/music.scm (beast)[arguments]: Disable parallel builds to
prevent a race condition.
 2016-10-23 07:47:03 +03:00
Efraim Flashner d661894159
gnu: infamous-plugins: Remove compiler optimizations. 
* gnu/packages/audio.scm (infamous-plugins)[arguments]: Add phase
removing built-in compiler optimizations in the source code.
 2016-10-23 07:47:03 +03:00
Efraim Flashner 7ca6830482
gnu: python2-validictory: Add missing input. 
* gnu/packages/python.scm (python2-validictory)[native-inputs]: Add
python2-setuptools.
(python-validictory)[properties]: New field.
 2016-10-23 07:47:03 +03:00
Efraim Flashner ff1e2b59bf
gnu: ffmpeg: Update to 3.1.5. 
* gnu/packages/video.scm (ffmpeg): Update to 3.1.5.
 2016-10-23 07:47:03 +03:00
Efraim Flashner 04ed5444fe
gnu: mutt: Update to 1.7.1. 
* gnu/packages/mail.scm (mutt): Update to 1.7.1.
 2016-10-23 07:47:03 +03:00
ng0 ad6198a5f9
gnu: Add vim-full. 
* gnu/packages/vim.scm (vim-full): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-23 07:47:02 +03:00
Efraim Flashner 84a79b8c42
gnu: aria2: Update to 1.28.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.28.0.
 2016-10-23 07:46:49 +03:00
Mark H Weaver 35680748a6
gnu: linux-libre: Update to 4.8.4. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.4.
 2016-10-23 00:21:20 -04:00
Mark H Weaver 62cf3ae09b
gnu: linux-libre@4.4: Update to 4.4.27. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.27.
 2016-10-23 00:18:42 -04:00
John Darrington 0881b616f4
gnu: guile-ncurses: Update to version 2.0. 
* gnu/packages/guile.scm (guile-ncurses): Update version to 2.0.
 2016-10-22 17:24:39 +02:00
Alex Sassmannshausen ed53a07145
gnu: perl-test-mockobject: Update to 1.20150527. 
* gnu/packages/perl.scm (perl-test-mockobject): Update to 1.20150527.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-22 02:20:15 -04:00