4035fcba93
channels: Do not fail when the inferior lacks 'guix repl'.
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Fixes <https://bugs.gnu.org/34637 >.
Reported by Martin Flack <martin.flack@gmail.com>.
Previously we'd fail to build the package cache for old versions of Guix
that lack 'guix repl'. Now we simply ignore the issue and keep going
without a cache.
* guix/inferior.scm (gexp->derivation-in-inferior): Add
#:silent-failure? and honor it.
[drop-extra-keyword]: New procedure.
Use it.
* guix/channels.scm (package-cache-file): Pass #:silent-failure? #t.
2019-03-08 12:31:38 +01:00
910aaa3b86
doc: Document references.
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Suggested by "pelzflorian (Florian Pelz)" <pelzflorian@pelzflorian.de>.
Fixes <https://bugs.gnu.org/34574 >.
* doc/guix.texi (Derivations): Document references.
2019-03-08 12:31:37 +01:00
fb0aeaacea
gnu: u-boot: Remove openssl input.
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Fixes <https://bugs.gnu.org/34717 >.
* gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs.
(u-boot-tools): Disable FIT_SIGNATURES in tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-08 12:31:37 +01:00
75f0bda71a
gnu: flatpak: Add more dependencies.
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* gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add
"glib-networking", "gnupg" and "gsettings-desktop-schemas".
2019-03-08 11:50:56 +01:00
daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
2019-03-08 09:30:00 +01:00
183b6575e7
gnu: r-mzr: Update to 2.16.2.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2.
[inputs]: Replace "boost" with "boost-for-mysql".
2019-03-08 09:14:01 +01:00
6453d7aecc
gnu: r-gviz: Update to 1.26.5.
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* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5.
2019-03-08 09:14:01 +01:00
101dcc29d3
gnu: r-ensembldb: Update to 2.6.7.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7.
2019-03-08 09:14:01 +01:00
d3713237c5
gnu: r-annotationhub: Update to 2.14.4.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4.
2019-03-08 09:14:01 +01:00
53e7f028ed
gnu: r-rhtslib: Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1.
2019-03-08 09:14:01 +01:00
d86b9eca56
gnu: r-genomicfeatures: Update to 1.34.4.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4.
2019-03-08 09:14:01 +01:00
d493043daf
gnu: r-rtracklayer: Update to 1.42.2.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2.
2019-03-08 09:14:01 +01:00
57f40dc220
gnu: r-rsamtools: Update to 1.34.1.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1.
2019-03-08 09:14:00 +01:00
58209b1e21
gnu: r-biocparallel: Update to 1.16.6.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6.
2019-03-08 09:14:00 +01:00
cd43ae3fd6
gnu: r-variantannotation: Update to 1.28.11.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11.
2019-03-08 09:14:00 +01:00
fff11bccc6
gnu: r-genomeinfodb: Update to 1.18.2.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2.
2019-03-08 09:14:00 +01:00
8972989e10
gnu: r-dexseq: Update to 1.28.2.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2.
2019-03-08 09:14:00 +01:00
792d3ed7eb
gnu: man-pages: Update to 5.00.
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* gnu/packages/man.scm (man-pages): Update to 5.00.
[source]: Re-format.
2019-03-08 01:35:42 +01:00
13b1fb5c92
gnu: dovecot: Update to 2.3.5.
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* gnu/packages/mail.scm (dovecot): Update to 2.3.5.
[arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from
‘patch-other-file-names’.
2019-03-08 01:34:41 +01:00
2fa1a3a808
gnu: dovecot: Don't use NAME in source URI.
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* gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME.
2019-03-08 01:34:40 +01:00
95803946c7
etc: snippets: Prefill package name.
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* etc/snippets/text-mode/guix-commit-message-add-package: Extract package
name from diff.
2019-03-08 00:17:30 +01:00
933dad9156
gnu: Add mruby.
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* gnu/packages/ruby.scm (mruby): New variable.
2019-03-08 00:07:45 +01:00
d6234620ac
etc: snippets: Prefill package name and version.
...
* etc/snippets/text-mode/guix-commit-message-update-package: Extract package
name and version from git diff output.
2019-03-07 23:55:24 +01:00
20662a3020
gnu: r-ggmap: Update to 3.0.0.
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* gnu/packages/cran.scm (r-ggmap): Update to 3.0.0.
[propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr,
r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj,
r-proto, and r-reshape2.
2019-03-07 23:52:44 +01:00
8f37f53837
gnu: r-readxl: Update to 1.3.0.
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* gnu/packages/cran.scm (r-readxl): Update to 1.3.0.
2019-03-07 23:52:44 +01:00
f544ab3379
gnu: r-sys: Update to 3.0.
...
* gnu/packages/cran.scm (r-sys): Update to 3.0.
2019-03-07 23:52:44 +01:00
790db519f4
gnu: r-servr: Update to 0.13.
...
* gnu/packages/cran.scm (r-servr): Update to 0.13.
2019-03-07 23:52:44 +01:00
e89d54278d
gnu: r-flextable: Update to 0.5.1.
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* gnu/packages/cran.scm (r-flextable): Update to 0.5.1.
[propagated-inputs]: Add r-data-table, r-magick, and r-rlang; remove r-r6 and
r-stringr.
2019-03-07 23:52:44 +01:00
e190d9af6c
gnu: r-proxy: Update to 0.4-23.
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* gnu/packages/cran.scm (r-proxy): Update to 0.4-23.
2019-03-07 23:52:43 +01:00
bef78244de
gnu: r-haven: Update to 2.1.0.
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* gnu/packages/cran.scm (r-haven): Update to 2.1.0.
2019-03-07 23:52:43 +01:00
59c513422c
gnu: r-emdbook: Update to 1.3.11.
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* gnu/packages/cran.scm (r-emdbook): Update to 1.3.11.
2019-03-07 23:52:43 +01:00
937e15571c
gnu: r-rmysql: Update to 0.10.17.
...
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.17.
[native-inputs]: Remove pkg-config.
2019-03-07 23:52:43 +01:00
2170a36c3b
gnu: r-gower: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-gower): Update to 0.2.0.
[native-inputs]: Remove r-knitr.
2019-03-07 23:52:43 +01:00
6e4a9b8365
gnu: r-ggsignif: Update to 0.5.0.
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* gnu/packages/cran.scm (r-ggsignif): Update to 0.5.0.
2019-03-07 23:52:43 +01:00
532b359865
gnu: r-jomo: Update to 2.6-7.
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* gnu/packages/cran.scm (r-jomo): Update to 2.6-7.
2019-03-07 23:52:43 +01:00
d2cd541cc7
gnu: r-mice: Update to 3.4.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.4.0.
2019-03-07 23:52:42 +01:00
22777c8657
gnu: r-xfun: Update to 0.5.
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* gnu/packages/cran.scm (r-xfun): Update to 0.5.
2019-03-07 23:52:42 +01:00
87bb1b8c9e
gnu: r-metap: Update to 1.1.
...
* gnu/packages/cran.scm (r-metap): Update to 1.1.
2019-03-07 23:52:42 +01:00
d8787b3387
gnu: r-ifultools: Update to 2.0-5.
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* gnu/packages/cran.scm (r-ifultools): Update to 2.0-5.
2019-03-07 23:52:42 +01:00
cb40b6eb9b
gnu: r-radiant-data: Update to 0.9.9.
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* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.9.
[propagated-inputs]: Add r-stringi; remove r-summarytools.
2019-03-07 23:52:42 +01:00
00fb320392
gnu: r-later: Update to 0.8.0.
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* gnu/packages/cran.scm (r-later): Update to 0.8.0.
2019-03-07 23:52:42 +01:00
8b2c80b8a3
gnu: r-vim: Update to 4.8.0.
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* gnu/packages/cran.scm (r-vim): Update to 4.8.0.
[propagated-inputs]: Add r-ranger.
2019-03-07 23:52:42 +01:00
b9b1041324
gnu: r-fnn: Update to 1.1.3.
...
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.
2019-03-07 23:52:42 +01:00
ea010aa31e
gnu: r-arules: Update to 1.6-3.
...
* gnu/packages/cran.scm (r-arules): Update to 1.6-3.
2019-03-07 23:52:41 +01:00
f5ce1dcce2
gnu: r-zip: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-zip): Update to 2.0.0.
2019-03-07 23:52:41 +01:00
bbe9421174
gnu: r-maptools: Update to 0.9-5.
...
* gnu/packages/cran.scm (r-maptools): Update to 0.9-5.
2019-03-07 23:52:41 +01:00
d3f22f0aea
gnu: r-reticulate: Update to 1.11.1.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.11.1.
2019-03-07 23:52:41 +01:00
fd1a17a522
gnu: r-officer: Update to 0.3.3.
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* gnu/packages/cran.scm (r-officer): Update to 0.3.3.
[propagated-inputs]: Add r-rlang.
2019-03-07 23:52:41 +01:00
7754557090
gnu: r-prediction: Update to 0.3.6.2.
...
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.2.
2019-03-07 23:52:41 +01:00
3d5bcae0c2
gnu: r-abjutils: Update to 0.2.3.
...
* gnu/packages/cran.scm (r-abjutils): Update to 0.2.3.
[propagated-inputs]: Add r-furrr, r-future, r-readr, and r-rlang; remove
r-plyr.
2019-03-07 23:52:41 +01:00
Ludovic Courtès