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29849 Commits

Author SHA1 Message Date
Ricardo Wurmus f43857d65d
gnu: emacs-slack: Update to 0-3.9272460. 
* gnu/packages/emacs.scm (emacs-slack): Update to 0-3.9272460.
 2018-03-08 01:24:02 +01:00
Ricardo Wurmus 0bdd5b8ab7
gnu: Add pigx-rnaseq. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable.
 2018-03-07 23:25:36 +01:00
Ricardo Wurmus e2cafc2449
gnu: Add r-algdesign. 
* gnu/packages/cran.scm (r-algdesign): New variable.
 2018-03-07 22:43:38 +01:00
Ricardo Wurmus f64fea1d2c
gnu: Add r-radiant-data. 
* gnu/packages/cran.scm (r-radiant-data): New variable.
 2018-03-07 22:18:38 +01:00
Ricardo Wurmus 5d9b82acfc
gnu: Add r-shinyace. 
* gnu/packages/cran.scm (r-shinyace): New variable.
 2018-03-07 22:18:38 +01:00
Ricardo Wurmus a00968b7a8
gnu: Add r-import. 
* gnu/packages/cran.scm (r-import): New variable.
 2018-03-07 22:18:38 +01:00
Ricardo Wurmus b2dc4cb41c
gnu: Add r-cgdsr. 
* gnu/packages/cran.scm (r-cgdsr): New variable.
 2018-03-07 22:18:38 +01:00
Ludovic Courtès 12ff7f3fc7
gnu: glibc: Add a comment in the patch. 
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: Add a comment.
 2018-03-07 21:39:32 +01:00
Ludovic Courtès 036ed3a830
gnu: glibc-2.26-patch: Remove unneeded 'replacement' field. 
* gnu/packages/base.scm (glibc-2.26-patched): Remove unneeded
'replacement' field.
 2018-03-07 21:39:32 +01:00
Ludovic Courtès 7c788ed227
gnu: commencement: 'glibc-final' inherits the replacement of 'glibc'. 
That was the intent of commit b672a81607,
but that commit left 'glibc-final' ungrafted.

Reported by Ricardo Wurmus at
<https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00435.html>.

* gnu/packages/commencement.scm (glibc-final): Use 'package/inherit' so
that we inherit the 'replacement' of GLIBC.
 2018-03-07 21:39:32 +01:00
Ludovic Courtès 0fccb24765
gnu: commencement: 'glibc-final' now inherits from 'glibc'. 
* gnu/packages/commencement.scm (glibc-final): Inherit from GLIBC
instead of GLIBC-FINAL-WITH-BOOTSTRAP-BASH.
[propagated-inputs]: New fields.
 2018-03-07 21:39:32 +01:00
Ricardo Wurmus 021caafa2c
gnu: Add r-heatmaply. 
* gnu/packages/cran.scm (r-heatmaply): New variable.
 2018-03-07 18:12:42 +01:00
Tobias Geerinckx-Rice f35843674e
gnu: znc: Update to 1.6.6. 
* gnu/packages/messaging.scm (znc): Update to 1.6.6.
 2018-03-07 15:37:14 +01:00
Tobias Geerinckx-Rice 7f1773eaee
gnu: Use HTTPS for zlib.net home pages. 
* gnu/packages/compression.scm (zlib, pigz)[home-page]: Use HTTPS.
 2018-03-07 15:37:14 +01:00
Tobias Geerinckx-Rice 9dae73c31c
gnu: pigz: Update to 2.4. 
* gnu/packages/compression.scm (pigz): Update to 2.4.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice 6c4da3b76a
gnu: meson: Mark up description. 
* gnu/packages/build-tools.scm (meson)[description]: Use @dfn.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice b8b34be61c
gnu: links, lynx, qutebrowser: Update phase style. 
* gnu/packages/web-browsers.scm (links, lynx, qutebrowser)[arguments]:
Substitute INVOKE for SYSTEM and end phases with #t.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice b9499508b4
gnu: keyutils: Update to 1.5.10. 
* gnu/packages/crypto.scm (keyutils): Update to 1.5.10.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice 925102bb98
gnu: cppcheck: Update to 1.82. 
* gnu/packages/check.scm (cppcheck): Update to 1.82.
 2018-03-07 15:37:13 +01:00
Tobias Geerinckx-Rice d4f5e68e55
gnu: cmdtest: Update to 0.32. 
* gnu/packages/check.scm (cmdtest): Update to 0.32.
 2018-03-07 15:37:12 +01:00
Tobias Geerinckx-Rice 45298300e4
gnu: pam-krb5: Mark up description. 
* gnu/packages/admin.scm (pam-krb5)[description]: Use @code.
 2018-03-07 15:37:12 +01:00
Tobias Geerinckx-Rice 0e6c242bb7
gnu: pam-krb5: Update to 4.8. 
* gnu/packages/admin.scm (pam-krb5): Update to 4.8.
 2018-03-07 15:37:12 +01:00
Tobias Geerinckx-Rice c3d828855a
gnu: mg: Use HTTPS home page. 
* gnu/packages/text-editors.scm (mg)[home-page]: Use HTTPS.
 2018-03-07 15:37:11 +01:00
Tobias Geerinckx-Rice b11481a542
gnu: mg: Update to 20171014. 
* gnu/packages/text-editors.scm (mg): Update to 20171014.
 2018-03-07 15:37:11 +01:00
Tobias Geerinckx-Rice 7649e4269e
gnu: c-reduce: Use HTTPS home page. 
* gnu/packages/debug.scm (c-reduce)[home-page]: Use HTTPS.
 2018-03-07 15:37:11 +01:00
Tobias Geerinckx-Rice 2b30af9541
gnu: c-reduce: Update to 2.6.0. 
* gnu/packages/debug.scm (c-reduce): Update to 2.6.0.
 2018-03-07 15:37:11 +01:00
Marius Bakke 5de561a796
gnu: gnome-todo: Fix compatibility with libical >= 3.0. 
* gnu/packages/patches/gnome-todo-libical-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (gnome-todo)[source](patches): Use it.
 2018-03-07 15:06:22 +01:00
Marius Bakke 4c8413cd61
gnu: gnome-calendar: Update to 3.26.3. 
* gnu/packages/gnome.scm (gnome-calendar): Update to 3.26.3.
 2018-03-07 15:06:22 +01:00
Marius Bakke ac033c7ba1
gnu: evolution-data-server: Update to 3.26.6. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.26.6.
[arguments]: Set RUNPATH in #:configure-flags to match new libdir structure.
Add phase 'dont-override-rpath' to make the build system respect it.
 2018-03-07 15:06:22 +01:00
Mark Meyer 30e43e816b
gnu: python2-gobject@2: Update to 2.28.7 
* gnu/packages/glib.scm (python2-gobject-2): Update to 2.28.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 14:57:10 +01:00
Mark Meyer eaa8292e41
gnu: Add python-pycurl. 
* gnu/packages/python-web.scm (python-pycurl, python2-pycurl): New
variables.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 14:57:10 +01:00
Marius Bakke 9dda6dadf1
gnu: xdriinfo: Update to 1.0.6. 
* gnu/packages/xorg.scm (xdriinfo): Update to 1.0.6.
 2018-03-07 14:53:25 +01:00
Marius Bakke b5ebc1bf8c
gnu: twm: Update to 1.0.10. 
* gnu/packages/xorg.scm (twm): Update to 1.0.10.
[source]: Use bzip-compressed tarball.
 2018-03-07 14:53:25 +01:00
Marius Bakke 5668a365d6
gnu: mkfontscale: Update to 1.1.3. 
* gnu/packages/xorg.scm (mkfontscale): Update to 1.1.3.
 2018-03-07 14:53:24 +01:00
Marius Bakke 0cf985d615
gnu: imagemagick: Update to 6.9.9-37. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-37.
 2018-03-07 14:53:24 +01:00
Marius Bakke e07a44891c
gnu: Add gtksourceviewmm. 
* gnu/packages/gtk.scm (gtksourceviewmm): New public variable.
 2018-03-07 14:53:24 +01:00
Marius Bakke 8e933cb36a
gnu: Use HTTPS on gtkmm.org home pages. 
* gnu/packages/gtk.scm (atkmm, gtkmm)[home-page]: Use HTTPS.
* gnu/packages/gnome.scm (libgnomecanvasmm)[home-page]: Likewise.
* gnu/packages/glib.scm (glibmm)[home-page]: Likewise.
 2018-03-07 14:53:24 +01:00
Marius Bakke 6a49ae7864
gnu: gtkmm: Use the for-test xorg variant for tests. 
* gnu/packages/gtk.scm (gtkmm)[native-inputs]: Replace XORG-SERVER with
XORG-SERVER-1.19.3.
[arguments]: Add #:disallowed-references.
 2018-03-07 14:53:24 +01:00
Marius Bakke 29c7b4d638
gnu: gtkmm: Update to 3.22.2. 
* gnu/packages/gtk.scm (gtkmm): Update to 3.22.2.
[arguments]: Set #:configure-flags.
 2018-03-07 14:53:24 +01:00
Marius Bakke 7700c6ca20
gnu: glibmm: Update to 2.54.1. 
* gnu/packages/glib.scm (glibmm): Update to 2.54.1.
[arguments]: Add #:configure-flags.
 2018-03-07 14:53:23 +01:00
Oleg Pykhalov 06c15ee585
gnu: Add r-colorout. 
* gnu/packages/statistics.scm (r-colorout): New public variable.
 2018-03-07 16:38:26 +03:00
Alex Vong 63d9900296
gnu: youtube-viewer: Add '$out/lib/perl5/site_perl/' to search path. 
Fixes <https://bugs.gnu.org/30671>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/video.scm (youtube-viewer)[arguments]: In 'wrap-program'
phase, add '$out/lib/perl5/site_perl/' to search path.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 11:22:42 +01:00
Charlie Ritter 270750d440
gnu: Add IBM Plex font. 
* gnu/packages/fonts.scm (font-ibm-plex): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 11:22:42 +01:00
Ludovic Courtès abfbdafd0e
linux-initrd: Add a hint for the missing module error. 
* gnu/system/linux-initrd.scm (check-device-initrd-modules): Add a
'&fix-hint'.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès 16de45557f
ui: 'display-hint' preserves Texinfo formatting. 
The previous method would mess up with @example formatting, for
instance.

* guix/ui.scm (display-hint): Parameterize '%text-width' instead of
using 'fill-paragraph'.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès e1ba6d49ea
ui: Display fix hints in the case where we have location info. 
* guix/ui.scm (call-with-error-handling): Display fix-hints in the
error + message case.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès ca23693d28
linux-initrd: Factorize 'check-device-initrd-modules'. 
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Move to...
* gnu/system/linux-initrd.scm (check-device-initrd-modules): ... here.
New procedure.
* po/guix/POTFILES.in: Add it.
* guix/scripts/system.scm (check-initrd-modules)[check-device]: Remove.
Use 'check-device-initrd-modules' instead.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès 6c4458172d
services: file-systems: Include 'user-file-systems' service. 
Previously the KNOWN-FS value used in 'essential-services' would be
incomplete: it would lack all the file systems provided by services that
extend 'file-system-service-type' (/sys/fs/cgroup,
/proc/sys/fs/binfmt_misc, etc.)  Consequently, upon shutdown,
'user-processes' would unmount these file systems before their
corresponding service had been stopped; when their corresponding (e.g.,
'file-system-/proc/sys/fs/binfmt_misc') was stopped, its 'umount' call
would fail.

This was harmless in practice, but this patch makes sure things work as
intended and file systems are unmounted in the right order.

* gnu/services/base.scm (file-system-shepherd-services): Instantiate
'user-file-systems' Shepherd service from here.
(user-unmount-service-type, user-unmount-service): Remove.
* gnu/system.scm (essential-services): Remove call to 'user-unmount-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust comment.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès 366ddc1ac5
services: dicod: Depend on 'user-processes'. 
* gnu/services/dict.scm (dicod-shepherd-service): Add 'requirement'.
 2018-03-07 11:22:41 +01:00
Eric Bavier 2468ca0488
gnu: thefuck: Update to 3.25. 
* gnu/packages/admin.scm (thefuck): Update to 3.25
[inputs]: Add python-pyte.
[native-inputs]: Remove python-setuptools.
* gnu/packages/patches/thefuck-test-environ.patch: Adjust to latest source.
 2018-03-06 23:33:57 -06:00