Commit Graph

20471 Commits (4583d827219536b7839a51584508d555d9f9dc95)

Author SHA1 Message Date
ng0 58891850e5
gnu: xz: Adjust the home page.
Its http URL permanently redirects to the https one,
throwing off some basic external linters.

* gnu/packages/compression.scm (xz)[home-page]: Adjust home page.
2017-12-23 22:13:34 +01:00
Dave Love 493937ae1f
gnu: openblas: Build with LAPACK.
* gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK;
add set-extralib phase.
[inputs]: Add fortran-lib.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-12-23 20:37:40 +01:00
Efraim Flashner 6a069618ab
gnu: weechat: Disable tests on non-Intel architectures.
* gnu/packages/irc.scm (weechat)[arguments]: Disable tests on non-Intel
architectures.
2017-12-23 20:52:02 +02:00
Rutger Helling 44dd001d87
gnu: par2cmdline: Update to 0.8.0.
* gnu/packages/backup.scm (par2cmdline): Update to 0.8.0.
2017-12-23 16:25:22 +01:00
Kei Kebreau 79bffa3ec8
gnu: chicken: Update to 4.13.0.
* gnu/packages/scheme.scm (chicken): Update to 4.13.0.
[source]: Remove obsolete patches.
* gnu/packages/patches/chicken-CVE-2017-6949.patch,
gnu/packages/patches/chicken-CVE-2017-11343.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-12-23 09:18:43 -05:00
Tobias Geerinckx-Rice 28c03b4555
gnu: dovecot: Update to 2.3.0.
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.
* gnu/services/mail.scm (dovecot-configuration)[director-doveadm-port]
[ssl-parameters-regenerate]: Delete fields.
[ssl-protocols]: Rename to...
[ssl-min-protocol]: ...this.
[mail-log-prefix, mdbox-rotate-size, ssl-cipher-list, imap-logout-format]:
Update default values.
* doc/guix.texi (Mail Services): Reflect the above changes to the service.
2017-12-23 07:11:14 +01:00
Tobias Geerinckx-Rice 2f3800e53e
gnu: ruby: Use HTTPS for home pages.
* gnu/packages/ruby.scm (ruby-hoe, bundler, ruby-rjb, ruby-libxml)
(ruby-permutation, ruby-gettext, ruby-test-unit, ruby-pry, ruby-tzinfo)
(ruby-tzinfo-data, ruby-term-ansicolor, ruby-pstree, ruby-json, ruby-rack)
(ruby-yard, ruby-ansi, ruby-rubytest, ruby-brass, ruby-qed, ruby-ae)
(ruby-lemon, ruby-rubytest-cli, ruby-hashery)[home-page]: Use HTTPS.
2017-12-23 05:49:47 +01:00
Tobias Geerinckx-Rice 925131916d
gnu: ruby-tzinfo-data: Update to 1.2017.3.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2017.3
2017-12-23 05:25:41 +01:00
Tobias Geerinckx-Rice 4237af8529
gnu: ruby-tzinfo: Update to 1.2.4.
* gnu/packages/ruby.scm (ruby-tzinfo): Update to 1.2.4
2017-12-23 05:25:32 +01:00
Tobias Geerinckx-Rice 484d68f27c
gnu: ocaml-utop: Update to 2.0.2.
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.0.2
2017-12-23 05:09:11 +01:00
Tobias Geerinckx-Rice 0e43721f32
gnu: ocaml-jbuilder: Update to 1.0+beta16.
* gnu/packages/ocaml.scm (ocaml-jbuilder): Update to 1.0+beta16
2017-12-23 05:09:11 +01:00
Tobias Geerinckx-Rice 36dba63b83
gnu: ocaml-ssl: Expand description.
* gnu/packages/ocaml.scm (ocaml-ssl)[description]: Expand based on Debian's.
2017-12-23 05:09:10 +01:00
Tobias Geerinckx-Rice 26b438e064
gnu: ocaml-ssl: Update to 0.5.5.
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.5
2017-12-23 05:09:10 +01:00
Tobias Geerinckx-Rice 7b20cd575e
gnu: ocaml-bitstring: Update to 2.1.1.
* gnu/packages/ocaml.scm (ocaml-bitstring): Update to 2.1.1
2017-12-23 05:09:09 +01:00
Tobias Geerinckx-Rice 50786325cd
gnu: fish: Mark up description.
* gnu/packages/shells.scm (fish)[description]: Use @command{}.
2017-12-23 05:09:09 +01:00
Tobias Geerinckx-Rice 66e86f2681
gnu: protobuf: Update to 3.5.1.
* gnu/packages/protobuf.scm (protobuf): Update to 3.5.1.
2017-12-23 04:48:17 +01:00
Kei Kebreau 84958de120
gnu: windowmaker: Enable xinerama support.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add libxinerama.
2017-12-22 18:48:23 -05:00
Mason Hock 85f075a057
gnu: lilypond: Update to 2.19.80.
* gnu/packages/music.scm (lilypond): Update to 2.19.80.
2017-12-22 22:16:53 +01:00
Christopher Baines 3faa422d5f
gnu: Build wiredtiger with snappy support.
This is probably necessary to get the MongoDB package in Guix to successfully
use the Guix wiredtiger package, as MongoDB it uses wiredtiger with snappy by
default.

* gnu/packages/databases.scm (wiredtiger)[arguments]: Add --enable-snappy to
  #:configure-flags.
  [inputs]: Add snappy.
2017-12-22 19:23:53 +00:00
Tobias Geerinckx-Rice 58087bdddc
gnu: fish: Update to 2.7.1.
* gnu/packages/shells.scm (fish): Update to 2.7.1.
2017-12-22 19:48:44 +01:00
Kei Kebreau 9e3a8ed0eb
gnu: python-pillow: Update to 4.3.0.
* gnu/packages/python.scm (python-pillow): Update to 4.3.0.
[propagated-inputs]: Add python-olefile.
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-22 11:49:43 -05:00
Kei Kebreau 3a1f26ff75
gnu: Add python-olefile.
* gnu/packages/python.scm (python-olefile, python2-olefile): New variables.
2017-12-22 11:49:28 -05:00
Leo Famulari 0054564b85
gnu: mariadb: Update to 10.1.29.
* gnu/packages/databases.scm (mariadb): Update to 10.1.29.
2017-12-22 10:53:50 -05:00
Roel Janssen b9bf2b8985
gnu: Update r-mutationalpatterns to 1.4.2.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.2.
2017-12-22 12:23:06 +01:00
Rutger Helling d633f2f62a
gnu: mutter: Add xorg-xserver-xwayland input.
* gnu/packages/gnome.scm (mutter)[inputs]: Add xorg-server-xwayland.
[arguments]: Add '--with-xwayland-path' to #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-22 09:55:01 +01:00
Konrad Hinsen de2032b912
gnu: Add python-activepapers.
* gnu/packages/python.scm (python-activepapers, python2-activepapers):
New variables.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-12-22 09:46:13 +01:00
Ricardo Wurmus 5145001a15
gnu: Add meandmyshadow.
* gnu/packages/games.scm (meandmyshadow): New variable.
2017-12-22 07:56:55 +01:00
Ricardo Wurmus 5f66a0a78b
gnu: emacs-ivy: Install documentation.
* gnu/packages/emacs.scm (emacs-ivy)[arguments]: Add phase "install-doc".
[native-inputs]: Add texinfo.
2017-12-22 07:56:55 +01:00
Ricardo Wurmus a837423412
gnu: emacs-ivy: Update to 0.10.0.
* gnu/packages/emacs.scm (emacs-ivy): Update to 0.10.0.
2017-12-22 07:56:54 +01:00
Tobias Geerinckx-Rice 8c4ca853e0
gnu: Add plzip.
* gnu/packages/compression.scm (plzip): New public variable.
2017-12-22 01:06:03 +01:00
Tobias Geerinckx-Rice 2e3b1a92f4
gnu: Add lzlib.
* gnu/packages/compression.scm (lzlib): New public variable.
2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice 5dca4c76ac
gnu: Add clzip.
* gnu/packages/compression.scm (clzip): New public variable.
2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice 34e8cf225c
gnu: Add lunzip.
* gnu/packages/compression.scm (lunzip): New public variable.
2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice 82d57f126c
gnu: Add hungrycat.
* gnu/packages/admin.scm (hungrycat): New public variable.
2017-12-22 01:06:01 +01:00
Tobias Geerinckx-Rice e807306324
gnu: zstd: Use default ‘check’ target.
* gnu/packages/compression.scm (zstd)[arguments]: Don't set #:test-target.
2017-12-22 01:06:01 +01:00
Leo Famulari 9c3ad422d0
gnu: libgxps: Fix CVE-2017-11590.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (libgxps)[source]: Use it.
2017-12-21 14:17:35 -05:00
Leo Famulari 5dc0e0b055
gnu: imagemagick: Update to 6.9.9-27.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-27.
2017-12-21 13:23:02 -05:00
Leo Famulari 382e5f1947
gnu: gnupg: Update to 2.2.4.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.4.
2017-12-21 12:59:56 -05:00
Tobias Geerinckx-Rice 00840ee004
gnu: weechat: Run tests.
* gnu/packages/irc.scm (weechat)[native-inputs]: Add cpputest.
[arguments]: Add ‘-DENABLE_TESTS=ON’ to #:configure-flags.  Add
‘disable-failing-tests’ phase to do just that.  Run the others.
2017-12-21 18:43:01 +01:00
Tobias Geerinckx-Rice f45e314e19
gnu: zstd: Disable unrelated format support.
* gnu/packages/compression.scm (zstd)[arguments]: Add HAVE_LZMA=0 to
2017-12-21 18:43:01 +01:00
Tobias Geerinckx-Rice 5308f15b43
gnu: zstd: Update to 1.3.3.
* gnu/packages/compression.scm (zstd): Update to 1.3.3.
2017-12-21 18:43:01 +01:00
Leo Famulari 806e891e85
gnu: gnupg@2.0: Superseded by the latest GnuPG.
The 2.0 series of GnuPG will stop receiving upstream support on
2017-12-31. From the release announcement of GnuPG 2.2.0:

"This release marks the start of a new long term support series
to replace the 2.0.x series which will reach end-of-life on 2017-12-31."

https://lists.gnupg.org/pipermail/gnupg-announce/2017q3/000413.html

* gnu/packages/gnupg.scm (gnupg-2.0)[properties]: New field.
2017-12-21 12:37:25 -05:00
Leo Famulari 0c9c9526bb
gnu: libxslt: Fix CVE-2017-5029 and re-apply the fix for CVE-2016-4738.
This is a followup to commit 2663c38826.

* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
* gnu/packages/patches/libxslt-CVE-2017-5029.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-12-21 12:28:47 -05:00
Leo Famulari 2a0e3d1635
gnu: libarchive: Fix CVE-2017-14502.
* gnu/packages/patches/libarchive-CVE-2017-14502.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (libarchive-3.3.2)[source]: Use it.
2017-12-21 12:28:43 -05:00
Konrad Hinsen c521c8f1a4
gnu: Add python-tempdir.
* gnu/packages/python.scm (python-tempdir, python2-tempdir): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-21 10:44:39 +01:00
Leo Famulari ce16d312c6
gnu: libexif: Fix CVE-2017-7544.
* gnu/packages/patches/libexif-CVE-2017-7544.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (feh)[source]: Use it.
2017-12-21 03:24:55 -05:00
Efraim Flashner 417f3d494f
gnu: xboing: Fix CVE-2004-0149.
* gnu/packages/patches/xboing-CVE-2004-0149: New file.
* gnu/packages/games.scm (xboing)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-12-21 09:04:34 +02:00
Leo Famulari dab2542f84
gnu: mupdf: Update to 1.12.0 [fixes CVE-2017-15369].
* gnu/packages/pdf.scm (mupdf): Update to 1.12.0.
[source]: Remove obsolete patches.
[inputs]: Add freeglut.
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch,
gnu/packages/patches/mupdf-CVE-2017-15587.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Update and
rename to...
* gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch: ... new file.
2017-12-21 02:00:59 -05:00
Tobias Geerinckx-Rice 91213c384b
gnu: weechat: Update to 2.0.1.
* gnu/packages/irc.scm (weechat): Update to 2.0.1.
2017-12-21 03:20:11 +01:00
Tobias Geerinckx-Rice fa79a908bb
gnu: Add perl-test-requiresinternet.
* gnu/packages/perl-check.scm (perl-test-requiresinternet): New public
variable.
2017-12-21 03:20:11 +01:00
Leo Famulari dacd8cf2e8
gnu: links: Fix-CVE-2017-11114.
* gnu/packages/patches/links-CVE-2017-11114.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web-browsers.scm (links)[source]: Use it.
2017-12-20 20:08:35 -05:00
Mark H Weaver 66df43b9ae
gnu: linux-libre: Update to 4.14.8.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.8.
(%linux-libre-hash): Update hash.
2017-12-20 18:28:36 -05:00
Mark H Weaver 0786e4bd12
gnu: linux-libre@4.9: Update to 4.9.71.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.71.
2017-12-20 18:27:48 -05:00
Mark H Weaver 770635e11d
gnu: linux-libre@4.4: Update to 4.4.107.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.107.
2017-12-20 18:27:08 -05:00
Ricardo Wurmus 4305176096
gnu: microscheme: Fix home page.
* gnu/packages/avr.scm (microscheme)[home-page]: Use GitHub project page.

Fixes <https://bugs.gnu.org/29791>.
2017-12-20 23:18:24 +01:00
Leo Famulari 0e06bec250
gnu: gpgme: Build with the latest GnuPG.
* gnu/packages/gnupg.scm (gpgme)[inputs]: Use the latest gnupg package.
[arguments]: Keep a reference to the gnupg package used for build.
2017-12-20 16:41:41 -05:00
Leo Famulari e6f63412c9
gnu: python-pygpgme: Use GnuPG 1 for the test suite.
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[inputs]: Use gnupg-1
and make it a native-input.
2017-12-20 15:13:22 -05:00
Leo Famulari 5965b08307
gnu: libassuan: Update to 2.5.1.
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.1.
2017-12-20 15:11:27 -05:00
Tobias Geerinckx-Rice 48a9654ad6
gnu: exim: Update to 4.90.
* gnu/packages/mail.scm (exim): Update to 4.90.
2017-12-20 16:50:28 +01:00
Leo Famulari 8bc6956bbd
gnu: rng-tools: Update to 6.1.
Rng-tools development appears to have moved to GitHub [0]:

"NOTE: The rng-tools project hasn't seen updates in some time, but is
still in active use. To facilitate ongoing development, the rng-tools
project is moved to here:
https://github.com/nhorman/rng-tools"

[0]
https://sourceforge.net/p/gkernel/wiki/Home/

* gnu/packages/linux.scm (rng-tools): Update to 6.1.
[source]: Use new upstream URL and give a descriptive file-name.
[arguments]: Add a 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and pkg-config.
[inputs]: Add sysfsutils.
2017-12-20 03:53:52 -05:00
Rutger Helling 09a91adcf8
gnu: libressl: Update to 2.6.4.
* gnu/packages/tls.scm (libressl): Update to 2.6.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-12-20 02:56:55 -05:00
Leo Famulari afcbc348a3
gnu: babl: Update to 0.1.38.
* gnu/packages/gimp.scm (babl): Update to 0.1.38.
2017-12-20 01:40:14 -05:00
Leo Famulari 74c96b0b09
gnu: webkitgtk: Update to 2.18.4 [fixes CVE-2017-{7156,13856,13866,13870}].
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.4.
2017-12-19 14:52:15 -05:00
Ricardo Wurmus 57ae890fb3
gnu: r-htmltable: Update to 1.11.0.
* gnu/packages/web.scm (r-htmltable): Update to 1.11.0.
[propagated-inputs]: Add r-dplyr, r-htmltools, r-rstudioapi, and r-tidyr.
2017-12-19 20:35:08 +01:00
Ricardo Wurmus aead9e1bc5
gnu: r-testthat: Update to 2.0.0.
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.0.
[propagated-inputs]: Add r-cli, r-rlang, and r-withr.
2017-12-19 20:35:08 +01:00
Ricardo Wurmus 2976f304e2
gnu: Add r-cli.
* gnu/packages/cran.scm (r-cli): New variable.
2017-12-19 20:35:08 +01:00
Ricardo Wurmus d03949449a
gnu: r-hardyweinberg: Update to 1.5.9.
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.5.9.
[propagated-inputs]: Add r-rsolnp.
2017-12-19 20:35:08 +01:00
Ricardo Wurmus cb8b4c1196
gnu: Add r-rsolnp.
* gnu/packages/cran.scm (r-rsolnp): New variable.
2017-12-19 20:35:07 +01:00
Ricardo Wurmus 02cdb45f34
gnu: Add r-truncnorm.
* gnu/packages/cran.scm (r-truncnorm): New variable.
2017-12-19 20:35:07 +01:00
Ricardo Wurmus 5378f38332
gnu: r-curl: Update to 3.1.
* gnu/packages/web.scm (r-curl): Update to 3.1.
2017-12-19 20:35:07 +01:00
Ricardo Wurmus f9f1291bc0
gnu: r-ade4: Update to 1.7-10.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-10.
[propagated-inputs]: Add r-mass.
2017-12-19 20:35:07 +01:00
Ricardo Wurmus 83b0e1d53f
gnu: r-registry: Update to 0.5.
* gnu/packages/statistics.scm (r-registry): Update to 0.5.
2017-12-19 20:35:07 +01:00
Ricardo Wurmus d2dc69b8be
gnu: r-iterators: Update to 1.0.9.
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
2017-12-19 20:35:07 +01:00
Ricardo Wurmus 4a1945da16
gnu: r-segmented: Update to 0.5-3.0.
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
2017-12-19 20:35:06 +01:00
Ricardo Wurmus 0a1b447e2b
gnu: r-rprojroot: Update to 1.3-1.
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
2017-12-19 20:35:06 +01:00
Ricardo Wurmus 102a271870
gnu: r-rcpparmadillo: Update to 0.8.300.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
2017-12-19 20:35:06 +01:00
Ricardo Wurmus 0300cacae1
gnu: r-plotrix: Update to 3.7.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
2017-12-19 20:35:06 +01:00
Ricardo Wurmus 004e108aad
gnu: r-git2r: Update to 0.20.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
2017-12-19 20:35:06 +01:00
Ricardo Wurmus 069e3b5c09
gnu: r-backports: Update to 1.1.2.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
2017-12-19 20:35:05 +01:00
Ricardo Wurmus 1028f9ef11
gnu: r-yaml: Update to 2.1.16.
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
2017-12-19 20:35:05 +01:00
Ricardo Wurmus de3fd9253f
gnu: r-reshape2: Update to 1.4.3.
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
2017-12-19 20:35:05 +01:00
Ricardo Wurmus d0c1a402db
gnu: r-digest: Update to 0.6.13.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
2017-12-19 20:35:05 +01:00
Ricardo Wurmus 2960f9658f
gnu: r-vcd: Update to 1.4-4.
* gnu/packages/cran.scm (r-vcd): Update to 1.4-4.
2017-12-19 20:35:05 +01:00
Ricardo Wurmus f46a74e9f0
gnu: r-proxy: Update to 0.4-20.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-20.
2017-12-19 20:35:04 +01:00
Ricardo Wurmus b9e8a5c594
gnu: r-biomart: Update to 2.34.1.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1.
[propagated-inputs]: Add r-httr.
2017-12-19 20:35:04 +01:00
Ricardo Wurmus 11e42209a8
gnu: r-gviz: Update to 1.22.2.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2.
2017-12-19 20:35:04 +01:00
Ricardo Wurmus 2ccd850192
gnu: r-gqtlstats: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1.
2017-12-19 20:35:04 +01:00
Ricardo Wurmus 28d25d037e
gnu: r-rtracklayer: Update to 1.38.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2.
2017-12-19 20:35:04 +01:00
Ricardo Wurmus d41f678420
gnu: r-limma: Update to 3.34.4.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4.
2017-12-19 20:35:03 +01:00
Ricardo Wurmus ab0dd8ac10
gnu: r-edger: Update to 3.20.2.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2.
2017-12-19 20:35:03 +01:00
Ricardo Wurmus 7665fb39f5
gnu: r-biocstyle: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1.
2017-12-19 20:35:03 +01:00
Ricardo Wurmus 756ac7254c
gnu: r-dexseq: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
2017-12-19 20:35:03 +01:00
Ricardo Wurmus 8d11ef4470
gnu: r-vegan: Update to 2.4-5.
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
2017-12-19 20:35:02 +01:00
Danny Milosavljevic 68f1869cfc
gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation.
* gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
2017-12-19 18:11:56 +01:00
Kei Kebreau a8db968fa4
gnu: wxmaxima: Update to 17.10.1.
* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
2017-12-19 11:26:16 -05:00
nee 7a070f020b
gnu: Add quakespasm.
* gnu/packages/games.scm (quakespasm): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-19 10:21:14 -05:00
Ricardo Wurmus 0464dc1c1e
gnu: gajim: Update to 0.16.9.
* gnu/packages/messaging.scm (gajim): Update to 0.16.9.
2017-12-19 13:17:17 +01:00
Ricardo Wurmus f3b985fa61
gnu: python-nbxmpp: Update to 0.6.1.
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.1.
2017-12-19 13:17:16 +01:00
Ricardo Wurmus 21bc352664
gnu: dino: Update to 0.0-3.f25fadde2.
* gnu/packages/messaging.scm (dino): Update to 0.0-3.f25fadde2.
2017-12-19 13:16:53 +01:00
Ricardo Wurmus 79b43bc3a1
gnu: pcsc-lite: Update to 1.8.23.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23.
[arguments]: Disable libsystemd check.
2017-12-19 13:16:42 +01:00
Ricardo Wurmus b28e05d45e
gnu: antiword: Fix broken embedded directory name.
* gnu/packages/textutils.scm (antiword)[arguments]: Replace "configure" phase
to substitute reference to "/usr/share/antiword" with the actual directory in
the store.
2017-12-19 13:16:36 +01:00
Roel Janssen fb6ca493f1
gnu: Update gwl to 0.1.1.
* gnu/packages/package-management.scm (gwl): Update to 0.1.1.
2017-12-19 12:27:43 +01:00
Efraim Flashner ba1ba9fcbd
gnu: emulation-station: Add missing file-name field.
* gnu/packages/games.scm (emulation-station)[source]: Add missing
file-name field.
2017-12-19 12:19:04 +02:00
Roel Janssen 28fc96cb1e
gnu: Update r-cowplot to 0.9.2.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
2017-12-19 10:47:19 +01:00
Leo Famulari 4a408d847e
gnu: mpd: Update to 0.20.13.
* gnu/packages/mpd.scm (mpd): Update to 0.20.13.
2017-12-19 02:28:06 -05:00
Leo Famulari 4fad6598c6
gnu: keepassxc: Update to 2.2.4.
* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.4.
2017-12-19 01:18:24 -05:00
Leo Famulari 4498cbd7ad
gnu: GnuPG pinentry: Update to 1.1.0.
* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3,
pinentry-qt): Update to 1.1.0.
2017-12-18 23:25:20 -05:00
Mark H Weaver 7a6a08c945
gnu: linux-libre: Update to 4.14.7.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.7.
(%linux-libre-hash): Update hash.
2017-12-18 19:52:02 -05:00
Mark H Weaver 48e1f44415
gnu: linux-libre@4.9: Update to 4.9.70.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.70.
2017-12-18 19:51:22 -05:00
Mark H Weaver 86300e61b9
gnu: linux-libre@4.4: Update to 4.4.106.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.106.
2017-12-18 19:50:39 -05:00
Marius Bakke 98bd11cfe7
gnu: termite: Update to 13.
* gnu/packages/terminals.scm (termite): Update to 13.
2017-12-19 01:37:22 +01:00
Marius Bakke 972fa87039
gnu: pcsc-lite: Update to 1.8.23.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23.
[arguments]<#:configure-flags>: Add "--disable-libsystemd".
[license]: Adjust to removed sd-daemon files.
2017-12-19 01:30:14 +01:00
Marius Bakke 937790df9d
gnu: qemu: Update to 2.10.2.
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.2.
[source](patches): Remove obsolete.
2017-12-19 01:15:09 +01:00
Marius Bakke 2ea3333504
gnu: libjpeg-turbo: Update to 1.5.3.
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3.
2017-12-18 23:25:20 +01:00
Marius Bakke 7bd9af7376
gnu: libsodium: Update to 1.0.16.
* gnu/packages/crypto.scm (libsodium): Update to 1.0.16.
2017-12-18 23:25:20 +01:00
Marius Bakke 8e9b3c6647
gnu: expect: Update to 5.45.3.
* gnu/packages/tcl.scm (expect): Update to 5.45.3.
2017-12-18 23:25:20 +01:00
Kei Kebreau 63dc763816
gnu: deutex: Update to 5.1.0.
* gnu/packages/games.scm (deutex): Update to 5.1.0.
2017-12-18 17:19:58 -05:00
Kei Kebreau 147d42fc03
gnu: emacspeak: Update to 47.0.
* gnu/packages/emacs.scm (emacspeak): Update to 47.0.
[source]: Remove snippet.
[arguments]: Set SHELL environment variable.
2017-12-18 16:50:45 -05:00
Efraim Flashner 91675d5082
gnu: rsync: Patch CVE-2017-{16548,17433,17434}.
* gnu/packages/rsync.scm (rsync)[source]: Add patches.
[properties]: Mark CVE-2017-15994 as not relevant.
* gnu/packages/patches/rsync-CVE-2017-16548.patch,
gnu/packages/patches/rsync-CVE-2017-17433.patch,
gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-12-18 22:53:46 +02:00
Ludovic Courtès b50a9cc008
gnu: psm: Update home page URL.
* gnu/packages/linux.scm (psm)[home-page]: Update.
[source](uri): Use it.
2017-12-18 17:52:58 +01:00
Ludovic Courtès 4e9dfe399b
gnu: Fix ambiguous 'zip' reference.
* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1).
2017-12-18 17:52:58 +01:00
Tobias Geerinckx-Rice af8c547d33
gnu: claws-mail: Update to 3.16.0.
* gnu/packages/mail.scm (claws-mail): Update to 3.16.0.
2017-12-18 15:22:08 +01:00
Ricardo Wurmus f1a2b1cb20
gnu: r-seurat: Update to 2.1.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.
2017-12-18 12:01:35 +01:00
Ricardo Wurmus fff9b88439
gnu: Add r-diffusionmap.
* gnu/packages/graph.scm (r-diffusionmap): New variable.
2017-12-18 12:01:35 +01:00
Ricardo Wurmus 007f6d9885
gnu: Add r-ggjoy.
* gnu/packages/cran.scm (r-ggjoy): New variable.
2017-12-18 12:01:34 +01:00
Ricardo Wurmus f90018e568
gnu: Add r-ggridges.
* gnu/packages/cran.scm (r-ggridges): New variable.
2017-12-18 12:01:34 +01:00
Ricardo Wurmus ae3f207951
gnu: Add r-scatterplot3d.
* gnu/packages/cran.scm (r-scatterplot3d): New variable.
2017-12-18 12:01:34 +01:00
Ricardo Wurmus 15ef07f00e
gnu: Add r-sdmtools.
* gnu/packages/cran.scm (r-sdmtools): New variable.
2017-12-18 12:01:34 +01:00
Ricardo Wurmus bf025ff6f2
gnu: Add r-dtw.
* gnu/packages/cran.scm (r-dtw): New variable.
2017-12-18 12:01:34 +01:00
Ricardo Wurmus ae16426007
gnu: Add r-ica.
* gnu/packages/cran.scm (r-ica): New variable.
2017-12-18 12:01:34 +01:00
Ricardo Wurmus 8271b8d22a
gnu: r-seurat: Fix ModularityOptimizer.jar.
* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
2017-12-18 12:01:34 +01:00
Ricardo Wurmus b6313997ad
gnu: qmidiarp: Update to 0.6.5.
* gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
2017-12-18 12:01:33 +01:00
Ricardo Wurmus cf31d5e114
gnu: Add noise-repellent.
* gnu/packages/audio.scm (noise-repellent): New variable.
2017-12-18 12:01:33 +01:00
Ricardo Wurmus 13edf1b9ea
gnu: Add aj-snapshot.
* gnu/packages/music.scm (aj-snapshot): New variable.
2017-12-18 12:01:33 +01:00
Ricardo Wurmus 39b335849b
gnu: Add jack-capture.
* gnu/packages/music.scm (jack-capture): New variable.
2017-12-18 12:01:33 +01:00
Ricardo Wurmus 4071379357
gnu: Add qjackrcd.
* gnu/packages/audio.scm (qjackrcd): New variable.
2017-12-18 12:01:33 +01:00
Ricardo Wurmus 92b36e3aa5
gnu: Add whysynth.
* gnu/packages/music.scm (whysynth): New variable.
2017-12-18 12:01:33 +01:00
Ricardo Wurmus f7ce213404
gnu: Add sonivox-eas.
* gnu/packages/music.scm (sonivox-eas): New variable.
2017-12-18 12:01:32 +01:00
Mark H Weaver 87dbb634a9
gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}].
* gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n.
(openssl-1.0.2m): Replace with ...
(openssl-1.0.2n): ... this updated version.  Update comment.
2017-12-17 21:10:45 -05:00
Christopher Baines 98cf8ca89a
gnu: Add mod-wsgi.
* gnu/packages/web.scm (mod-wsgi): New variable.
2017-12-17 20:46:46 +00:00
Ludovic Courtès 56d924a59b
gnu: grammalecte: Fix 'license' field.
* gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to
'gpl3+'.
2017-12-17 21:38:03 +01:00
Nicolas Goaziou ad564a06ad
gnu: Add grammalecte.
* gnu/packages/dictionaries.scm (grammalecte): New variable.
2017-12-17 18:58:17 +01:00
Mark Meyer 217f704c6a
gnu: gourmet: Fix runtime failure and enhance plugin.
Fixes <https://bugs.gnu.org/29227>.
Reported by Caleb Herbert <csh@bluehome.net>.

* gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-lxml.
[arguments]: Custom install phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-17 17:22:31 +01:00
Ludovic Courtès f845793237
gnu: pinentry-tty: Add meta-data for 'guix refresh'.
* gnu/packages/gnupg.scm (pinentry-tty)[properties]: New field.
2017-12-17 16:49:45 +01:00
Efraim Flashner bc3d607748
gnu: global: Update to 6.6.1 [fixes CVE-2017-17531].
* gnu/packages/code.scm (global): Update to 6.6.1.
2017-12-17 08:51:26 +02:00
Leo Famulari bef02e9e1c
gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228].
* gnu/packages/python.scm (python-dulwich, python2-dulwich): Update to 0.18.6.
2017-12-16 17:04:05 -05:00
Mark Meyer 1475d5c6c7
gnu: krita: Enhance krita.
* gnu/packages/kde.scm (krita)[inputs]: Add libjpeg-turbo, ilmbase and openexr.
[native-inputs]: Add vc.
[arguments]: Set path to headers for ilmbase.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-16 16:50:31 -05:00
Leo Famulari e908a5af89
gnu: borg: Fix a data loss bug.
See <https://github.com/borgbackup/borg/issues/3444> for more information.

* gnu/packages/patches/borg-fix-archive-corruption-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
2017-12-16 16:33:32 -05:00
Mathieu Othacehe ca6182a1be
gnu: guix: Update snapshot to 02345c.
* gnu/packages/package-management.scm (guix): Update to 02345c.
2017-12-16 18:43:49 +01:00
Efraim Flashner 25504aaff8
gnu: lookingglass: Limit to Intel compatable systems.
* gnu/packages/virtualization.scm (lookingglass)[supported-systems]: New
field.
2017-12-16 19:19:15 +02:00