Commit Graph

462 Commits

Author SHA1 Message Date
Ricardo Wurmus 44d10b1f72
gnu: Separate Python core packages from the rest.
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
2019-01-15 14:46:44 +01:00
Ricardo Wurmus d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
2019-01-07 15:55:06 +01:00
Efraim Flashner c007e35d24
gnu: recutils: Update to 1.8.
* gnu/packages/databases.scm (recutils): Update to 1.8.
[source]: Remove snippet.
[arguments]: Remove custom 'set-bash4.4-header-location phase. Enable
parallel tests.
[inputs]: Move check ...
[native-inputs]: ... to here. Add pkg-config.
2019-01-06 15:42:06 +02:00
Alex Vong 38abef124b
gnu: sqlite: Replace with 3.26.0 [security fixes].
Fixes <https://bugs.gnu.org/33751>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/databases.scm (sqlite-3.26.0): New public variable.
(sqlite)[replacement]: Use it.
(sqlite-with-fts5): Use 'package/inherit'.
(sqlite-with-column-metadata): Likewise.

Modified-by: Mark H Weaver <mhw@netris.org>
2018-12-18 20:20:16 -05:00
Christopher Baines fe5969656a
gnu: mongo-tools: Fix build.
I guess this broke when upgrading go. I did try upgrading to the later patch
and minor releases, but they had similar problems, so lets upgrade separately.

* gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
2018-12-04 20:27:04 +00:00
Marius Bakke 25ca46985c
Merge branch 'master' into core-updates 2018-11-29 15:56:49 +01:00
Brett Gilio 682c291899
gnu: sqlcipher: Update to 3.4.2.
* gnu/packages/databases.scm (sqlcipher): Update to 3.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-24 22:40:46 +01:00
Marius Bakke 52b24ba495
gnu: mariadb: Update to 10.1.37 [security fixes].
This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156,
and CVE-2018-3251.  See
<https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details.

* gnu/packages/databases.scm (mariadb): Update to 10.1.37.
2018-11-24 02:03:12 +01:00
Mark H Weaver 96272e2822
gnu: databases: Return #t from all phases.
* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb)
(sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from
all phases, use invoke where appropriate, and remove vestigial plumbing.
2018-11-14 23:44:16 -05:00
Marius Bakke 79ee97a144
Merge branch 'master' into core-updates 2018-11-14 21:20:46 +01:00
Leo Famulari ec35067631
gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850].
* gnu/packages/databases.scm (postgresql): Update to 10.6.
2018-11-11 14:10:03 -05:00
Efraim Flashner 22d04ceda0
gnu: python-rq: Update to 0.12.0.
* gnu/packages/databases.scm (python-rq): Update to 0.12.0.
2018-11-11 11:54:28 +02:00
Efraim Flashner c92d056a8b
gnu: python-alembic: Update to 1.0.2.
* gnu/packages/databases.scm (python-alembic, python2-alembic): Update
to 1.0.2.
2018-11-11 11:13:53 +02:00
Ricardo Wurmus f1f1cebdd3
gnu: mdbtools: Fetch sources from git.
* gnu/packages/databases.scm (mdbtools)[source]: Fetch from git.
2018-11-11 10:09:54 +01:00
Ricardo Wurmus f626b71923
gnu: mdbtools: Remove custom bootstrap phase.
* gnu/packages/databases.scm (mdbtools)[arguments]: Remove.
2018-11-11 10:05:56 +01:00
Marius Bakke 64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Leo Famulari 41d2b7f50b
gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
2018-11-08 13:42:56 -05:00
Marius Bakke e2568df74e
gnu: rocksdb: Update to 5.15.10.
* gnu/packages/databases.scm (rocksdb): Update to 5.15.10.
2018-11-07 16:06:56 +01:00
Marius Bakke 8dd3665883
gnu: rocksdb: Don't use unstable tarball.
* gnu/packages/databases.scm (rocksdb)[source]: Use GIT-FETCH.
2018-11-07 16:06:56 +01:00
Marius Bakke f4a5faa9dc
Merge branch 'master' into core-updates 2018-11-05 23:56:22 +01:00
Efraim Flashner d28af1991a
gnu: qt: Use system sqlite.
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
2018-10-28 09:51:25 +02:00
Tobias Geerinckx-Rice d9bcdfce29
gnu: mongodb: Use INVOKE.
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-10-24 04:56:23 +02:00
Marius Bakke ffddb42d6c
Merge branch 'master' into core-updates 2018-10-21 18:06:02 +02:00
Amirouche b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0.
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
Amirouche 4680fef705
gnu: Add wiredtiger 3.1.0
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
  wiredtiger

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
Marius Bakke d02bb02f7d
Merge branch 'master' into core-updates 2018-10-17 20:47:11 +02:00
Tobias Geerinckx-Rice f825faa502
gnu: python-pickleshare: Update to 0.7.5.
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.5.
2018-10-10 23:49:13 +02:00
Marius Bakke cf6db76d2a
Merge branch 'master' into core-updates 2018-10-05 19:15:39 +02:00
Ludovic Courtès 944a3a8b8e
gnu: recutils: Adjust Gnulib to libc 2.28.
Fixes <https://bugs.gnu.org/32776>.

* gnu/packages/databases.scm (recutils)[modules, snippet]: New fields.
2018-10-03 15:23:56 +02:00
Tobias Geerinckx-Rice a4764ff00a
gnu: python-fakeredis: Edit description.
* gnu/packages/databases.scm (python-fakeredis)[description]:
Fix (upstream) typo. Get carried away.
2018-09-28 00:01:43 +02:00
Marius Bakke 6a0427af6c
Merge branch 'master' into core-updates 2018-09-26 01:11:32 +02:00
Tobias Geerinckx-Rice eeecbe09cc
gnu: perl-dbd-mysql: Update to 4.048.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
2018-09-21 10:25:31 +02:00
Leo Famulari d763940711
Merge branch 'master' into core-updates 2018-09-13 13:32:39 -04:00
Tobias Geerinckx-Rice 702a87f2d1
gnu: perl-dbd-mysql: Update to 4.047.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047.
[arguments]: Add 'skip-library-detection' phase.
2018-09-11 21:03:07 +02:00
Marius Bakke 4333d48a82
gnu: mariadb: Move unbundle substitutions to source snippet.
* gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions
from ...
[arguments]: The 'unbundle' phase here.  Rename to 'fix-pcre-detection.
2018-09-09 17:59:37 +02:00
Marius Bakke 1d957c79b6
gnu: mariadb: Update to 10.1.36.
* gnu/packages/databases.scm (mariadb): Update to 10.1.36.
[arguments]: Disable one new test.
2018-09-09 17:59:36 +02:00
Marius Bakke 839167ff9d
Merge branch 'staging' into core-updates 2018-08-25 16:44:07 +02:00
Marius Bakke 173d291466
Merge branch 'master' into staging 2018-08-25 16:38:51 +02:00
Ludovic Courtès 444488fc1b
gnu: boost: Move 1.59.0 definition to boost.scm.
Fixes a regression introduced in commit
7cbf06d8c2 where the top-level code of
these two modules would depend on each other, leading to "boost: unbound
variable" kind of errors in some circumstances.

* gnu/packages/databases.scm (boost-for-mysql): Move to...
* gnu/packages/boost.scm (boost-for-mysql): ... here.  Make public and
add 'properties' field.
2018-08-24 00:36:04 +02:00
Leo Famulari 58927996d9
gnu: perl-dbd-mysql: Update to 4.046.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22 15:40:08 -04:00
Marius Bakke 233df51ebc
Merge branch 'master' into staging 2018-08-22 18:14:04 +02:00
Marius Bakke fb76ef8477
gnu: Remove GCC ICE workarounds.
* gnu/packages/patches/doxygen-gcc-ice.patch,
gnu/packages/patches/mariadb-gcc-ice.patch,
gnu/packages/patches/perf-gcc-ice.patch: Delete files
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Likewise.
* gnu/packages/linux.scm (perf)[source](patches): Likewise.
* gnu/packages/documentation.scm (doxygen)[inputs, arguments]: Likewise.
2018-08-22 18:01:09 +02:00
Marius Bakke 43cec3fb1e
gnu: mariadb: Remove huge mysql_embedded executable.
* gnu/packages/databases.scm (mariadb)[arguments]: Adjust deletion regex.
2018-08-22 17:52:40 +02:00
Marius Bakke 22f5c07624
gnu: mariadb: Propagate OpenSSL.
* gnu/packages/databases.scm (mariadb)[inputs]: Move OPENSSL ...
[propagated-inputs]: ... here.
(r-rmysql)[inputs]: Remove OPENSSL.
2018-08-22 17:50:07 +02:00
Tobias Geerinckx-Rice 311f06c94a
gnu: Add sqlcrush.
* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22 00:03:43 +02:00
Tobias Geerinckx-Rice 9763102bd7
gnu: Add python-pymysql.
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
2018-08-22 00:03:43 +02:00
Marius Bakke fdb222033c
gnu: gdbm: Update to 1.18.
* gnu/packages/databases.scm (gdbm): Update to 1.18.
2018-08-21 17:25:23 +02:00
Marius Bakke 2be1b754ba
gnu: python-sqlalchemy: Update to 1.2.11.
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.2.11.
2018-08-21 17:24:30 +02:00
Marius Bakke 9871a896aa
gnu: python-sqlalchemy: Use 'invoke'.
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Use INVOKE
instead of SYSTEM*.
2018-08-21 17:24:30 +02:00
Tobias Geerinckx-Rice 8327ffcc7f
gnu: unixodbc: Update to 2.3.7.
* gnu/packages/databases.scm (unixodbc): Update to 2.3.7.
2018-08-21 07:04:05 +02:00