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34132 Commits

Author SHA1 Message Date
Marius Bakke 9f585a528e
gnu: python-pytest-cov: Update to 2.5.1. 
* gnu/packages/check.scm (python-pytest-cov): Update to 2.5.1.
 2018-07-28 15:52:29 +02:00
Marius Bakke 85f1342f01
gnu: python-hypothesis: Update to 3.66.6. 
* gnu/packages/check.scm (python-hypothesis): Update to 3.66.6.
 2018-07-28 15:52:29 +02:00
Marius Bakke 153812ee0d
gnu: python-flake8: Update to 3.5.0. 
* gnu/packages/python.scm (python-flake8): Update to 3.5.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke fb4c6115f5
gnu: python-pytest-runner: Update to 4.2. 
* gnu/packages/check.scm (python-pytest-runner): Update to 4.2.
[arguments]: Remove.
 2018-07-28 15:52:28 +02:00
Marius Bakke d0205dfd92
gnu: python-setuptools: Update to 40.0.0. 
* gnu/packages/python.scm (python-setuptools): Update to 40.0.0.
[source](uri): Adjust to zipball archive.
 2018-07-28 15:52:28 +02:00
Marius Bakke fdf5344a23
gnu: python-pycodestyle: Update to 2.4.0. 
* gnu/packages/python.scm (python-pycodestyle): Update to 2.4.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke 9e7d6e818c
gnu: python-more-itertools: Update to 4.2.0. 
* gnu/packages/python.scm (python-more-itertools): Update to 4.2.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke e8e7cd12c7
gnu: python-pyflakes: Update to 2.0.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 2.0.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke 3765c9c95b
gnu: python-py: Update home page. 
* gnu/packages/python.scm (python-py)[home-page]: Change to repository URL.
 2018-07-28 15:52:27 +02:00
Marius Bakke a0d77eba72
gnu: python-py: Update to 1.5.4. 
* gnu/packages/python.scm (python-py): Update to 1.5.4.
 2018-07-28 15:52:27 +02:00
Marius Bakke bc46a45ae7
gnu: python-py: Add missing dependency on setuptools-scm. 
* gnu/packages/python.scm (python-py)[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
 2018-07-28 15:52:26 +02:00
Marius Bakke a422e2478e
gnu: python: Build reproducibly. 
\o/

* gnu/packages/python.scm (python-3.7)[arguments]: Set PYTHONHASHSEED before
rebuilding all bytecode.  Adjust regex so that lib2to3_ex.py gets compiled.
 2018-07-28 15:52:26 +02:00
Marius Bakke 81d967075e
gnu: python: Rebuild bytecode after removing tests. 
* gnu/packages/python.scm (python-3.7)[arguments]: Run 'rebuild-bytecode'
after 'remove-tests' to save CPU cycles.  Adjust exclude regex.
 2018-07-28 15:52:26 +02:00
Marius Bakke a1454169e0
gnu: python: Update to 3.7.0. 
* gnu/packages/python.scm (python-3.6): Rename to ...
(python-3.7): ... this.  Update to 3.7.0.
[arguments]: Remove phase 'patch-timestamp-for-pyc-files' and related code.
Add phases to unset SOURCE_DATE_EPOCH during the check phase.
(python-3): Is now PYTHON-3.7.
* guix/build/python-build-system.scm (enable-bytecode-determinism): Don't set
DETERMINISTIC_BUILD.
 2018-07-28 15:52:26 +02:00
Marius Bakke d66146073d
gnu: python: Remove outdated comment and phases. 
* gnu/packages/python.scm (python-2.7)[arguments]: Don't set SOURCE_DATE_EPOCH
or make libraries writable, since those are handled by gnu-build-system.
(python-3.6): Don't override :#tests?.
 2018-07-28 15:52:25 +02:00
Marius Bakke 7ba79d5d76
gnu: libxml2: Add explicit dependency on XZ. 
* gnu/packages/xml.scm (libxml2)[inputs]: New field.
 2018-07-28 15:48:27 +02:00
Marius Bakke 5f8642ea6a
gnu: libxml2: Move static library to separate output. 
* gnu/packages/xml.scm (libxml2)[outputs, arguments]: New fields.
 2018-07-28 15:41:03 +02:00
Ludovic Courtès c95c9032b4
gnu: x265: Fix compilation on ARMv7. 
* gnu/packages/patches/x265-arm-asm-primitives.patch: New file.
* gnu/packages/video.scm (x265)[sources](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-07-28 15:08:07 +02:00
Ludovic Courtès 5193ae64ca
gnu: mariadb: Work around GCC ICE on armhf-linux. 
* gnu/packages/patches/mariadb-gcc-ice.patch: New file.
* gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add
'apply-patch' phase.
[native-inputs]: Conditionally add "gcc-ice-patch" input.
 2018-07-28 15:08:07 +02:00
Marius Bakke fbd2b8da5d
gnu: icu4c: Don't keep a reference to coreutils. 
* gnu/packages/icu4c.scm (icu4c)[arguments]: Add phase 'avoid-coreutils-reference'.
 2018-07-28 15:02:38 +02:00
Marius Bakke b148506df7
gnu: openldap: Don't build static libraries. 
* gnu/packages/openldap.scm (openldap)[arguments]: Add "--disable-static" to
  #:configure-flags.  Remove phase 'provide-libtool'.
 2018-07-28 15:02:37 +02:00
Marius Bakke 3b6f8a45d7
gnu: libinput: Update to 1.11.3. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.11.3.
 2018-07-28 14:54:18 +02:00
Marius Bakke cb8f7d6d2f
gnu: meson: Update to 0.47.1. 
* gnu/packages/build-tools.scm (meson): Update to 0.47.1.
* gnu/packages/patches/meson-for-build-rpath.patch: Adjust to file rename and
indendation change.
 2018-07-28 14:54:18 +02:00
Marius Bakke 94eb59fb4a
build-system/meson: Remove RUNPATH workarounds. 
* guix/build-system/meson.scm (default-patchelf): Remove.
(lower)[build-inputs]: Remove PATCHELF.
(meson-build): Don't delete 'fix-runpath' phase on armhf.
* guix/build/meson-build-system.scm (configure): Add "--c_link_args" and
  "-cpp_link_args" instead of setting LDFLAGS.
(meson-build): Don't apply 'fix-runpath' phase.
 2018-07-28 14:54:18 +02:00
Chris Marusich 346a632144
doc: Clarify some of guix-daemon's GC options. 
Reported by Pierre Neidhardt <ambrevar@gmail.com>.

* doc/guix.texi (Invoking guix-daemon): Fix an incorrect statement
regarding --gc-keep-outputs.  Add a little to the description of this
option and --gc-keep-derivations.
 2018-07-28 03:00:16 -07:00
Kei Kebreau b15a020dd5
gnu: allegro: Update to 5.2.4.0. 
* gnu/packages/game-development.scm (allegro): Update to 5.2.4.0.
[source]: Update URL.
 2018-07-27 14:30:49 -04:00
Ludovic Courtès 74a4fa5040
gnu: gcc@8: Update to 8.2.0. 
* gnu/packages/gcc.scm (gcc-8): Update to 8.2.0.
 2018-07-27 18:52:58 +02:00
Ludovic Courtès f00d66b12c
gnu: Add font-blackfoundry-inria. 
* gnu/packages/fonts.scm (font-blackfoundry-inria): New file.
 2018-07-27 18:00:06 +02:00
Ludovic Courtès 223779c4c5
gnu: emacs-flycheck: Don't rely on pkg-info.el for 'flycheck-version'. 
* gnu/packages/emacs.scm (flycheck)[source]: Add 'modules' and
'snippet'.
 2018-07-27 18:00:06 +02:00
Ricardo Wurmus 26fd7b24ec
gnu: pigx-scrnaseq: Disable another expensive test. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Disable multiqc
test.
 2018-07-27 15:44:23 +02:00
Ricardo Wurmus ed2dfe3955
gnu: Add snakemake-4. 
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus 269f100330
gnu: snakemake: Add missing dependencies. 
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus 216a72a957
gnu: Add python-datrie. 
* gnu/packages/python.scm (python-datrie): New variable.
 2018-07-27 15:30:38 +02:00
Marius Bakke beb8511c73
gnu: imagemagick: Update to 6.9.10-8. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-8.
 2018-07-27 14:43:43 +02:00
Marius Bakke 2fcbc572f9
gnu: mbedtls-apache: Update to 2.7.5. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.5.
 2018-07-27 14:43:43 +02:00
Ricardo Wurmus b62715aa82
gnu: snakemake: Update to 5.2.0. 
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
 2018-07-27 14:19:43 +02:00
Ricardo Wurmus 22305f859b
gnu: guile-sdl2: Update to 0.3.0. 
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.0.
[arguments]: Remove "patch-makefile" phase.
 2018-07-27 14:19:33 +02:00
Danny Milosavljevic d804d0b9ef
import: hackage: Emit native-inputs in the importer. 
* guix/import/cabal.scm (cabal-custom-setup-dependencies): Export.
(cabal-package-custom-setup): Export.
(<cabal-package>): New field "custom-setup".
(make-cabal-package): Modify.
(eval-cabal): Modify.
* guix/import/hackage.scm (cabal-dependencies->names): Factor out...
(cabal-test-dependencies->names): ...this.
(cabal-custom-setup-dependencies->names): New procedure.
(hackage-module->sexp): Modify.
 2018-07-27 11:42:53 +02:00
Ludovic Courtès 1428bce348
build-self: Default to Guile 2.2 when building a standalone Guix. 
* build-aux/build-self.scm (build): Change #:guile-version to default to
"2.2" when PULL-VERSION is greater than 0.
 2018-07-27 11:32:59 +02:00
Ludovic Courtès 8bece84022
gnu: guile: Remove version 2.2.2. 
* gnu/packages/guile.scm (guile-2.2.2): Remove.
* guix/self.scm (guile-for-build): Remove special case for "2.2.2".
(guix-derivation): Likewise.
* build-aux/build-self.scm (build): Likewise.
 2018-07-27 11:28:15 +02:00
Ludovic Courtès 2abd76e8af
gnu: guile: Update to 2.2.4. 
* gnu/packages/guile.scm (guile-2.2): Update to 2.2.4.
(guile-2.2.4): Remove.
* gnu/packages/package-management.scm (guix)[inputs]: Switch to
GUILE-2.2.
* guix/self.scm (guile-for-build): Likewise.
 2018-07-27 11:22:12 +02:00
Kei Kebreau 9dafb64711
gnu: tiled: Update to 1.1.6. 
* gnu/packages/game-development.scm (tiled): Update to 1.1.6.
[arguments]: Substitute invoke for system*.
 2018-07-27 00:17:06 -04:00
Kei Kebreau 6e92fba4b0
gnu: python-xsge: Update to 2018.02.26. 
* gnu/packages/game-development.scm (python-xsge, python2-xsge): Update to
2018.02.26.
[arguments]: Substitute invoke for system*.
 2018-07-26 23:35:45 -04:00
Ludovic Courtès 8afa18d6e7
gexp: Remove #:deprecation-warnings from 'imported-files'. 
This is a followup to 30d722c392.

* guix/gexp.scm (imported-files/derivation): Remove
 #:deprecation-warnings.  Pass "GUILE_WARN_DEPRECATED=no"
unconditionally to #:env-vars of 'gexp->derivation'.  Adjust caller.
(imported-files): Remove #:deprecation-warnings and adjust callers.
(imported-modules): Likewise.
(compiled-modules, gexp->derivation): Adjust accordingly.
 2018-07-27 00:09:52 +02:00
Ludovic Courtès 4a42abc52c
gexp: Inline bug-fix in 'compiled-modules'. 
This is a followup to 5d669883ec.

* guix/gexp.scm (compiled-modules)[build-utils-hack?]: Remove.
Inline everything as if BUILD-UTILS-HACK? is true.
 2018-07-27 00:02:00 +02:00
Ludovic Courtès 8c7bebd6ea
gexp: Remove backward compatibility hack for 'imported-files'. 
* guix/gexp.scm (gexp->derivation): Remove #:import-creates-derivation?.
(imported-files): Remove #:derivation? and adjust callers.
(imported-modules), compiled-modules): Likewise.
* guix/packages.scm (patch-and-repack): Adjust 'gexp->derivation' call.
 2018-07-26 22:59:49 +02:00
Ludovic Courtès 28c4905b12
packages: 'patch-and-repack' compresses tarballs again. 
* guix/packages.scm (patch-and-repack): Add missing "a" in "tar cvfa".
Fixes a regression introduced in
3e95125e9b whereby we'd always create
uncompressed tarballs.
 2018-07-26 22:58:30 +02:00
Kei Kebreau d36b98ad95
gnu: freeciv: Update to 2.6.0. 
* gnu/packages/games.scm (freeciv): Update to 2.6.0.
 2018-07-26 14:43:10 -04:00
Brendan Tildesley e8ec2dda08
gnu: ecryptfs-utils: Patch more hardcoded paths. 
* gnu/packages/linux.scm (ecryptfs-utils): [arguments]: Add an additional file
to be patched that was missing in the last fix. Ecryptfs will now find the
umount binary path as well as mount and others. Re-sort the list of files to be
substituted.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-07-26 13:19:57 -04:00
Ludovic Courtès ac46a1c8e4
Merge branch 'master' into core-updates 2018-07-26 18:15:13 +02:00