Commit Graph

507 Commits (4978ffcfc24f6192a89768c9bf4a88bcb132c705)

Author SHA1 Message Date
Ricardo Wurmus 55a9a8c2b9 gnu: python-pysam, python2-pysam: Move to bioinformatics.scm.
* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
  ...here.
2016-03-03 13:46:26 +01:00
Christopher Allan Webber aa5946edb2 gnu: Remove python2-pil.
python2-pil is vulnerable to several security issues (CVE-2016-0740,
CVE-2016-0775, and CVE-2016-2533).  Fortunately, python2-pillow provides
equivalent functionality, so this package can be cleanly removed.

* gnu/packages/python.scm (python2-pil): Remove variable.
2016-02-29 15:01:20 -08:00
Efraim Flashner a724924beb gnu: python-tornado: Update to 4.3.
* gnu/packages/python.scm (python-tornado): Update to 4.3.
[native-inputs]: Add python-backports-abc.
(python2-tornado)[inputs]: Add python2-singledispatch.
2016-02-28 10:53:42 +02:00
Efraim Flashner 6b59fc1020 gnu: Add python-backports-abc.
* gnu/packages/python.scm (python-backports-abc): New variable.
2016-02-28 10:53:35 +02:00
Mark H Weaver b35461748b gnu: Fix misplaced commas (unquote).
Fix many occurrences of comma (unquote) being placed immediately after the
previous list item, e.g. ("ncurses", ncurses) in the inputs.

* gnu/packages/base.scm (patch, gnu-make),
  gnu/packages/bioinformatics.scm (hmmer),
  gnu/packages/bittorrent.scm (aria2),
  gnu/packages/compression.scm (pbzip2),
  gnu/packages/databases.scm (recutils),
  gnu/packages/fonts.scm (font-terminus),
  gnu/packages/freedesktop.scm (xdg-utils, elogind),
  gnu/packages/games.scm (gnujump),
  gnu/packages/gnome.scm (libidl, gnumeric, eog, gedit),
  gnu/packages/gnunet.scm (gnunet),
  gnu/packages/gnuzilla.scm (mozjs, nspr),
  gnu/packages/gtk.scm (gtksourceview, gdk-pixbuf),
  gnu/packages/lua.scm (lua),
  gnu/packages/openstack.scm (python-swiftclient),
  gnu/packages/perl.scm (perl-json-any),
  gnu/packages/polkit.scm (polkit-qt),
  gnu/packages/python.scm (wrap-python3, python-oauthlib)
  (python-mccabe-0.2.1, python-contextlib2, python2-rauth),
  gnu/packages/qt.scm (qtkeychain),
  gnu/packages/ruby.scm (ruby-nokogiri),
  gnu/packages/screen.scm (screen),
  gnu/packages/ssh.scm (libssh),
  gnu/packages/video.scm (ffmpeg, mplayer),
  gnu/packages/vim.scm (vim),
  gnu/packages/xdisorg.scm (redshift),
  gnu/packages/xfce.scm (xfce4-panel, xfce4-settings),
  gnu/packages/xnee.scm (xnee),
  gnu/packages/xorg.scm (font-adobe100dpi, font-adobe75dpi),
  gnu/packages/zsh.scm (zsh): Fix misplaced commas (unquote).
2016-02-27 08:49:26 -05:00
Danny Milosavljevic b31fbea566 gnu: Add python-psycopg2.
* gnu/packages/python.scm (python-psycopg2, python2-psycopg2): New variables.
2016-02-25 14:35:28 -08:00
Efraim Flashner eb6e2e812a gnu: python-decorator: Update to 4.0.9.
* gnu/packages/python.scm (python-decorator): Update to 4.0.9.
2016-02-25 21:05:37 +02:00
Efraim Flashner cc0c4fdedd gnu: python-traitlets: Update to 4.1.0.
* gnu/packages/python.scm (python-traitlets): Update to 4.1.0.
[native-inputs]: Add python-mock.
2016-02-25 21:05:37 +02:00
Efraim Flashner c6ebd40da1 gnu: python-mccabe: Update to 0.4.0.
* gnu/packages/python.scm (python-mccabe): Update to 0.4.0.
[inputs]: Add python-pytest, python-pytest-runner.
(python-mccabe-0.2.1)[inputs]: Only use python-setuptools.
2016-02-25 21:05:37 +02:00
Efraim Flashner 43789136d2 gnu: python-flake8: Update to 2.5.4.
* gnu/packages/python.scm (python-flake8): Update to 2.5.4.
[inputs]: Use recent python-pep8, python-pyflakes.
2016-02-25 21:05:37 +02:00
Efraim Flashner db251311cf gnu: python-pep8: Update to 1.7.0.
* gnu/packages/python.scm (python-pep8): Update to 1.7.0.
2016-02-25 21:05:37 +02:00
Efraim Flashner a4d9609c98 gnu: python-networkx: Update to 1.11.
* gnu/packages/python.scm (python-networkx): Update to 1.11.
2016-02-25 21:05:37 +02:00
Efraim Flashner 6f068e081b gnu: python-hypothesis: Update to 3.0.4.
* gnu/packages/python.scm (python-hypothesis): Update to 3.0.4.
[native-inputs]: Remove python-setuptools.
(python2-hypothesis): Use 'strip-python2-variant'.
[native-inputs]: Add python2-enum34, python2-setuptools.
2016-02-25 21:05:37 +02:00
Efraim Flashner fee04c198c gnu: python-html5lib: Update to 1.0b8.
* gnu/packages/python.scm (python-html5lib): Update to 1.0b8.
2016-02-25 21:05:37 +02:00
Efraim Flashner b6785c2e3a gnu: python-isodate: Update to 0.5.4.
* gnu/packages/python.scm (python-isodate): Update to 0.5.4.
2016-02-25 21:05:37 +02:00
Efraim Flashner 9d813ec147 gnu: python-wsgi-intercept: Update to 1.1.2.
* gnu/packages/python.scm (python-wsgi-intercept): Update to 1.1.2.
[native-inputs]: Add python-six.
2016-02-25 21:05:37 +02:00
Efraim Flashner 29f20168cf gnu: python-pytest-localserver: Update to 0.3.5.
* gnu/packages/python.scm (python-pytest-localserver): Update to 0.3.5.
2016-02-25 21:05:37 +02:00
Efraim Flashner da8b011d2a gnu: python-requests-toolbelt: Update to 0.6.0.
* gnu/packages/python.scm (python-requests-toolbelt): Update to 0.6.0.
2016-02-25 21:05:37 +02:00
Efraim Flashner 74a066f9a0 gnu: python-requests: Update to 2.9.1.
* gnu/packages/python.scm (python-requests): Update to 2.9.1.
2016-02-25 21:05:37 +02:00
Efraim Flashner 40981b5c18 gnu: python-wheel: Update to 0.29.0.
* gnu/packages/python.scm (python-wheel): Update to 0.29.0.
2016-02-25 21:05:37 +02:00
Christopher Allan Webber a8f20f63dc gnu: Add python-pastescript.
* gnu/packages/python.scm (python-pastescript, python2-pastescript):
  New variables.
2016-02-25 11:01:56 -08:00
Christopher Allan Webber c4a7904c21 gnu: Add python-paste.
* gnu/packages/python.scm (python-paste, python2-paste): New variables.
* gnu/packages/patches/python-paste-remove-timing-test.patch: New file.
* gnu/packages/patches/python-paste-remove-website-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
2016-02-25 11:01:45 -08:00
Leo Famulari 548d716539 gnu: Add python-sphinx-repoze-autointerface.
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): New variables.
2016-02-22 00:40:25 -05:00
Leo Famulari 3276517cdc gnu: Add python-sphinxcontrib-programoutput.
* gnu/packages/python.scm (python-sphinxcontrib-programoutput,
python2-sphinxcontrib-programoutput): New variables.
2016-02-22 00:40:25 -05:00
Christopher Allan Webber 2de98febb3 gnu: python-apipkg: Remove unzip dependency.
Unzip was never used for this package.

* gnu/packages/python.scm (python-apipkg): Remove unzip dependency.
2016-02-21 19:02:26 -08:00
Christopher Allan Webber 0c3b90d478 gnu: Add python-editor.
* gnu/packages/python.scm (python-editor, python2-editor): New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber 97e32948ea gnu: Add python-translitcodec.
* gnu/packages/python.scm (python-translitcodec, python2-translitcodec):
  New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber 22df6419f8 gnu: Add python-celery.
* gnu/packages/python.scm (python-celery, python2-celery): New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber b6f0b9fb68 gnu: Add python-billiard.
* gnu/packages/python.scm (python-billiard, python2-billiard):
  New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber 7d38730507 gnu: Add python-kombu.
* gnu/packages/python.scm (python-kombu, python2-kombu): New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber 8dfceab779 gnu: Add python-amqp.
* gnu/packages/python.scm (python-amqp, python2-amqp): New variables.
2016-02-21 19:01:13 -08:00
Christopher Allan Webber 4cb122cd8d gnu: Add python-anyjson.
* gnu/packages/python.scm (python-anyjson, python2-anyjson): New variables.
2016-02-21 19:00:32 -08:00
Christopher Allan Webber aa6313d699 gnu: Add python-webtest.
* gnu/packages/python.scm (python-webtest, python2-webtest):
  New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber 1cf536521d gnu: Add python-pyquery.
* gnu/packages/python.scm (python-pyquery, python2-pyquery): New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber bb7518b1e8 gnu: Add python-pastedeploy.
* gnu/packages/python.scm (python-pastedeploy, python2-pastedeploy):
  New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber 778a284be5 gnu: Add python-wsgiproxy2.
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2):
  New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber ae00a41feb gnu: Add python-waitress.
* gnu/packages/python.scm (python-waitress, python2-waitress): New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber b32a1e47a9 gnu: Add python-beautifulsoup4.
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
  New variables.
2016-02-21 18:59:34 -08:00
Christopher Allan Webber 8fa58fc9a1 gnu: Add python-pytest-xdist.
* gnu/packages/python.scm (python-pytest-xdist, python2-pytest-xdist):
  New variables.
2016-02-21 18:59:30 -08:00
Christopher Allan Webber 16c84f9031 gnu: Add python2-execnet.
* gnu/packages/python.scm (python2-execnet): New variable.
2016-02-21 18:59:30 -08:00
Christopher Allan Webber e08739c3c6 gnu: Add python2-apipkg.
* gnu/packages/python.scm (python2-apipkg): New variable.
2016-02-21 18:59:30 -08:00
Christopher Allan Webber af5a460222 gnu: Add python-alembic.
* gnu/packages/python.scm (python-alembic, python2-alembic): New variables.
2016-02-21 18:59:29 -08:00
Andy Wingo 5cc3096c73 Update all sources from freedesktop.org to use https
* gnu/packages/xorg.scm:
* gnu/packages/xdisorg.scm:
* gnu/packages/video.scm:
* gnu/packages/tls.scm:
* gnu/packages/python.scm:
* gnu/packages/pulseaudio.scm:
* gnu/packages/polkit.scm:
* gnu/packages/pdf.scm:
* gnu/packages/libcanberra.scm:
* gnu/packages/gtk.scm:
* gnu/packages/gstreamer.scm:
* gnu/packages/gnome.scm:
* gnu/packages/glib.scm:
* gnu/packages/ghostscript.scm:
* gnu/packages/freedesktop.scm:
* gnu/packages/fontutils.scm: Update all sources hosted on freedesktop
  to fetch tarballs via https.  freedesktop.org appears to have updated
  recently to redirect all http to https.  As an exception, we leave
  pkg-config like it is, because pkg-config is needed to build gnutls,
  and without gnutls we can't download https URLs.
2016-02-21 21:11:49 +01:00
Leo Famulari 9eb05bc381 gnu: python-enum34: Remove python-setuptools from inputs.
* gnu/packages/python.scm (python-enum34)[inputs]: Remove
python-setuptools.
2016-02-21 02:46:23 -05:00
Leo Famulari 68f1cdecf1 gnu: Don't use python-enum34 when building with python-3.4.
* gnu/packages/docker.scm (docker-compose)[inputs]: Remove python-enum34.
* gnu/packages/python.scm (python-parse-type)[inputs]: Likewise.
(behave)[inputs]: Likewise.
(python-cryptography)[propagated-inputs]: Likewise.
(python2-cryptography)[propagated-inputs]: Add python2-enum34.
2016-02-21 02:46:23 -05:00
Leo Famulari 820acd1bc3 gnu: Add python2-enum34.
* gnu/packages/python.scm (python2-enum34): New variable.
2016-02-21 02:46:23 -05:00
Leo Famulari d39ae1e5c6 gnu: python-enum34: Update to 1.1.0.
* gnu/packages/python.scm (python-enum34): Update to 1.1.0.
[source]: Use pypi-uri.
2016-02-21 02:46:23 -05:00
David Thompson 50aaec25ca gnu: Add python-mako.
* gnu/packages/python.scm (python-mako, python2-mako): New variables.
2016-02-17 21:21:47 -05:00
Leo Famulari a9da8fec62 gnu: python-click-log: Update to 0.1.3.
* gnu/packages/python.scm (python-click-log): Update to 0.1.3.
2016-02-15 18:48:36 -05:00
Leo Famulari c834cf82b6 gnu: python-atomicwrites: Update to 0.1.9.
* gnu/packages/python.scm (python-atomicwrites): Update to 0.1.9.
2016-02-15 18:48:36 -05:00