Commit Graph

21268 Commits

Author SHA1 Message Date
Ludovic Courtès 4afc903a8c
services: xorg: Add 'font-misc-misc' to the default font set.
Fixes <https://bugs.gnu.org/24279>.
Reported by John Darrington <john@darrington.wattle.id.au>.

* gnu/services/xorg.scm (%default-xorg-fonts): Add FONT-MISC-MISC.
2017-12-01 16:00:14 +01:00
Tobias Geerinckx-Rice e695d79dc6
gnu: ghc-edisoncore: Fix typo in synopsis.
* gnu/packages/haskell.scm (ghc-edisoncore)[synopsis]: Fix typo.
2017-12-01 15:03:13 +01:00
Tobias Geerinckx-Rice fb5569b0c8
gnu: man-pages: Update to 4.14.
* gnu/packages/man.scm (man-pages): Update to 4.14.
2017-12-01 15:03:12 +01:00
Mathieu Othacehe 00e39b2ea4
system: vm: Do not add EFI partition on ARM system.
* gnu/system/vm.scm (qemu-img): Do not add EFI partition if we are targetting
  ARM.

UEFI support on u-boot is still experimental, so do not add EFI partition on
ARM for now.
2017-12-01 13:55:49 +01:00
Dave Love f1de0e37d5
gnu: openfoam: Clean up to reduce closure.
This saves ~1GB.

* gnu/packages/simulation.scm (openfoam)[outputs]: Add debug.
[arguments]: Clean up .o and src after build.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
ng0 6101cad4d1
gnu: Add geomyidae.
* gnu/packages/web.scm (geomyidae): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
Mike Gerwitz 491cbd3553
gnu: Add emacs-evil-matchit.
* gnu/packages/emacs.scm (emacs-evil-matchit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
Ludovic Courtès c03ba83c17
gnu: git: Run tests sequentially.
Fixes <https://bugs.gnu.org/29512>.
Reported by George myglc2 Clemmer <myglc2@gmail.com>.

* gnu/packages/version-control.scm (git)[arguments]: Add
 #:parallel-tests?.
2017-12-01 11:28:48 +01:00
Ludovic Courtès f8446df663
gnu: elogind: Remove "uaccess" tag usage in "seat-late" rules.
* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'remove-uaccess-tag' phase.
2017-12-01 11:28:48 +01:00
Mark H Weaver 1776d5cd18
gnu: linux-libre: Update to 4.14.3.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.3.
(%linux-libre-hash): Update hash.
2017-12-01 01:37:08 -05:00
Mark H Weaver 6850c9ced5
gnu: linux-libre@4.9: Update to 4.9.66.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.66.
2017-12-01 01:36:21 -05:00
Mark H Weaver 8b8600022c
gnu: linux-libre@4.4: Update to 4.4.103.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
2017-12-01 01:35:44 -05:00
Rutger Helling 34a28c13f5
gnu: qemu: Enable seccomp support.
* gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
ng0 e33904336f
gnu: fish-guix: Update to 0.1.2.1.
* gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1.
(license): Switch to bsd-3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
Ludovic Courtès f00515b483
vm: Filter out file systems that refer to UUIDs or labels.
* gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]:
Filter out things that refer to file system UUIDs or labels.
2017-11-30 18:14:57 +01:00
Vasile Dumitrascu 1d0865c19a
gnu: monero-core: Fix missing dependency.
* gnu/packages/finance.scm (monero-core)[inputs]: Add readline.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
Mike Gerwitz 1d752e4345
gnu: Add xautolock.
* gnu/packages/xdisorg.scm (xautolock): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:56 +01:00
Ricardo Wurmus 117d8cc40e
gnu: jellyfish: Update to 2.2.7.
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
2017-11-30 17:38:36 +01:00
Ricardo Wurmus f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31.
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
2017-11-30 17:28:27 +01:00
Ricardo Wurmus b50a4b1391
gnu: r-cowplot: Update to 0.9.1.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
2017-11-30 17:28:27 +01:00
Ricardo Wurmus a3ae2fa537
gnu: r-rcppprogress: Update to 0.4.
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
2017-11-30 17:28:26 +01:00
Ricardo Wurmus 0382d37734
gnu: r-rmarkdown: Update to 1.8.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
2017-11-30 17:28:26 +01:00
Ricardo Wurmus e35cac9581
gnu: r-batchjobs: Update to 1.7.
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
2017-11-30 17:28:25 +01:00
Ricardo Wurmus 05fd8e6b46
gnu: r-pracma: Update to 2.1.1.
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
2017-11-30 17:28:24 +01:00
Ricardo Wurmus 9b8d02011f
gnu: r-annotationhub: Update to 2.10.1.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
2017-11-30 17:28:24 +01:00
Ricardo Wurmus 87e91a9fff
gnu: r-msnid: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
2017-11-30 17:28:23 +01:00
Ricardo Wurmus 439492654b
gnu: r-maldiquant: Update to 1.17.
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
2017-11-30 17:28:23 +01:00
Ricardo Wurmus 06e8e0fc6c
gnu: r-genomicalignments: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
2017-11-30 17:28:22 +01:00
Ricardo Wurmus 1ce5d32b49
gnu: r-limma: Update to 3.34.2.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
2017-11-30 17:28:22 +01:00
Ricardo Wurmus 8131cf4162
gnu: r-variantannotation: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
2017-11-30 17:28:21 +01:00
Ricardo Wurmus d2081a17ed
gnu: r-getopt: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
2017-11-30 17:28:20 +01:00
Ricardo Wurmus 4220ab0c81
gnu: r-gseabase: Update to 1.40.1.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
2017-11-30 17:28:20 +01:00
Ricardo Wurmus d259932ca8
gnu: r-dexseq: Update to 1.24.1.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
2017-11-30 17:28:19 +01:00
Ricardo Wurmus 058644c0f2
gnu: r-deseq2: Update to 1.18.1.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
2017-11-30 17:28:18 +01:00
Ricardo Wurmus 654c29aceb
gnu: r-annotate: Update to 1.56.1.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
2017-11-30 17:28:18 +01:00
Ricardo Wurmus 814fd32670
gnu: r-circlize: Update to 0.4.2.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
2017-11-30 17:28:17 +01:00
Ricardo Wurmus d76f987c42
gnu: r-rcpp: Update to 0.12.14.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
2017-11-30 17:28:17 +01:00
Ricardo Wurmus 26007cd5ee
gnu: r-timedate: Update to 3042.101.
* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
2017-11-30 17:28:16 +01:00
Ricardo Wurmus 87313f64d9
gnu: r-stringi: Update to 1.1.6.
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
2017-11-30 17:28:16 +01:00
Ricardo Wurmus 3e11bddcc7
gnu: r-devtools: Update to 1.13.4.
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
2017-11-30 17:28:15 +01:00
Ricardo Wurmus 20b0f8a5ec
gnu: r-mclust: Update to 5.4.
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
2017-11-30 17:28:15 +01:00
Ricardo Wurmus 6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
2017-11-30 17:28:14 +01:00
Ricardo Wurmus a0a3184925
gnu: r-car: Update to 2.1-6.
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
2017-11-30 17:28:14 +01:00
Ricardo Wurmus c8fb593502
gnu: r-sn: Update to 1.5-1.
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
2017-11-30 17:28:13 +01:00
Ricardo Wurmus b796f9e6be
gnu: r-openssl: Update to 0.9.9.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
2017-11-30 17:28:13 +01:00
Ricardo Wurmus 09c0107f75
gnu: r-hms: Update to 0.4.0.
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
2017-11-30 17:28:12 +01:00
Ricardo Wurmus 6c84c735a5
gnu: r-dendextend: Update to 1.6.0.
* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
2017-11-30 17:28:12 +01:00
Ricardo Wurmus 18a11c6d62
gnu: r-recipes: Update to 0.1.1.
* gnu/packages/cran.scm (r-recipes): Update to 0.1.1.
[propagated-inputs]: Add r-broom and r-matrix.
2017-11-30 17:28:11 +01:00
Ricardo Wurmus 6c8c8c6b75
gnu: Add r-broom.
* gnu/packages/cran.scm (r-broom): New variable.
2017-11-30 17:28:10 +01:00
Ricardo Wurmus cdc129dc53
gnu: Add r-psych.
* gnu/packages/cran.scm (r-psych): New variable.
2017-11-30 17:28:10 +01:00