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12540 Commits

Author SHA1 Message Date
Ricardo Wurmus e42eb908f6 gnu: r: Update to 3.3.0. 
* gnu/packages/statistics.scm (r): Update to 3.3.0.
[inputs]: Add curl and tzdata.
[arguments]: Set TZDIR in "set-timezone" phase.
 2016-05-06 14:58:19 +02:00
Ludovic Courtès d33c8b4649
syscalls: Use 'define-c-struct' for 'fcntl-flock'. 
* guix/build/syscalls.scm (%struct-flock): Use 'define-c-struct'.
(fcntl-flock): Use 'write-flock!' and 'make-bytevector' instead of
'make-c-struct'.
 2016-05-06 13:25:30 +02:00
Ludovic Courtès 4e0ea3eb28
utils: Move 'fcntl-flock' to (guix build syscalls). 
* guix/utils.scm (%struct-flock, F_SETLKW, F_SETLK, F_xxLCK)
(fcntl-flock): Move to...
* guix/build/syscalls.scm: ... here.  New variables.
* guix/nar.scm: Adjust imports accordingly.
* tests/utils.scm ("fcntl-flock wait", "fcntl-flock non-blocking"): Move
to...
* tests/syscalls.scm: ... here.  New tests.
(temp-file): New variable.
 2016-05-06 13:25:30 +02:00
Alex Griffin ba2613bb4e
system: Do not export PS1 in /etc/skel/.bashrc. 
* gnu/system/shadow.scm (default-skeletons)[bashrc]: Remove "export"
for 'PS1'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-06 13:25:30 +02:00
Al McElrath 766a22fb4d
gnu: i3status: Update to 2.10. 
Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-06 01:38:27 -04:00
Leo Famulari fdad1f3c42
gnu: i3status: Use https URLs. 
* gnu/packages/wm.scm (i3status)[source]: Use https URL.
[home-page]: Use https URL.
 2016-05-06 01:35:07 -04:00
Leo Famulari 8658d40350
gnu: i3-wm: Use https URLs. 
* gnu/packages/wm.scm (i3-wm)[source]: Use https URL.
[home-page]: Use https URL.
 2016-05-06 01:29:56 -04:00
Roel Janssen 52ad9cb60e
gnu: Add r-estimability. 
* gnu/packages/statistics.scm (r-estimability): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-05 20:42:36 -04:00
Roel Janssen 82047474ea
gnu: Add r-coda. 
* gnu/packages/statistics.scm (r-coda): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-05 20:23:48 -04:00
Efraim Flashner 76192896e9
services: Add connman-service. 
* gnu/services/networking.scm (connman-service): New procedure.
(connman-service-type, %connman-activation): New variables.
(connman-shepherd-service): New procedure.
* doc/guix.texi (Networking Services): Document it.
 2016-05-05 23:07:09 +03:00
Efraim Flashner 9478c9d834
gnu: Add connman. 
* gnu/packages/connman.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-05-05 23:07:09 +03:00
Leo Famulari ddba00cdf0
gnu: ntp: Update to 4.2.8p7 [security fixes]. 
This fixes CVE-2015-7704 and CVE-2016-{1547,1548,1549,1551,2516,2517,
2518,2519}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8.p7.
 2016-05-05 16:05:04 -04:00
Efraim Flashner 9c61acf2c1 gnu: mercurial: Update to 3.8.1 [fixes CVE-2016-3105]. 
* gnu/packages/version-control.scm (mercurial): Update to 3.8.1.
 2016-05-05 19:43:29 +03:00
Jan Nieuwenhuizen 7309045cd3
gnu: Add libiconv. 
* gnu/packages/base.scm (libiconv): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-05 16:55:14 +02:00
Mark H Weaver c041dcd133
gnu: linux-libre: Update to 4.5.3. 
* gnu/packages/linux.scm (linux-libre): Update to 4.5.3.
 2016-05-05 08:48:07 -04:00
Mark H Weaver a6b3c07a7a
gnu: linux-libre-4.4: Update to 4.4.9. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.9.
 2016-05-05 08:44:52 -04:00
Mark H Weaver a82f322b1c
gnu: linux-libre-4.1: Update to 4.1.23. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.23.
 2016-05-05 07:56:37 -04:00
Alex Kost 86670ca4b7 emacs: main: Use (guix combinators). 
Reported by rsiddharth on #guix.
This is a followup to commit 958dd3ce68.

* emacs/guix-main.scm: Use (guix combinators) module as 'memoize' moved there.
 2016-05-05 11:33:06 +03:00
Leo Famulari 1a957c21c6
gnu: libressl: Update to 2.3.4 [security fixes]. 
Fixes CVE-2016-{2105, 2106, 2107, 2108, 2109}.

* gnu/packages/tls.scm (libressl): Update to 2.3.4.
 2016-05-05 02:16:17 -04:00
Ludovic Courtès 41c569d9b9
build: Add 'run-system-tests.scm'. 
This file was meant to be added as part of
commit e9f693d06f.

* build-aux/run-system-tests.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
 2016-05-04 23:56:42 +02:00
Ludovic Courtès e9f693d06f
tests: Add whole-system test. 
* gnu/system/vm.scm (virtualized-operating-system): Export.
* gnu/tests/base.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* Makefile.am (check-system): New target.
 2016-05-04 23:35:55 +02:00
Ludovic Courtès 957afcae3c
Add (gnu tests) and (gnu build marionette). 
* gnu/build/marionette.scm, gnu/tests.scm: New files.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add them.
* gnu/system/vm.scm (common-qemu-options): Remove '-serial stdio'.
 2016-05-04 23:35:55 +02:00
Ludovic Courtès b2fef041fc
system: Add procedures to access user accounts and service names. 
* gnu/system.scm (operating-system-user-accounts)
(operating-system-shepherd-service-names): New procedures.
 2016-05-04 23:35:55 +02:00
Ludovic Courtès b13cf17fcf
gnu: java-qdox: Escape "@" in description. 
* gnu/packages/java.scm (java-qdox-1.12)[description]: Use "@@tag", not
"@tag".
 2016-05-04 23:35:55 +02:00
Ludovic Courtès 4d9ed58498
build: Preserve stderr for shell tests. 
Fixes a regression introduced in
a9edb211e7 where the .log files of the .sh
tests would not contain stderr.

* build-aux/test-env.in: Redirect stderr only when --quiet-stderr is
passed.
* Makefile.am (SCM_LOG_DRIVER): Add --quiet-stderr.
 2016-05-04 23:35:55 +02:00
Ludovic Courtès 958dd3ce68
utils: Move combinators to (guix combinators). 
* guix/utils.scm (compile-time-value, memoize, fold2)
(fold-tree, fold-tree-leaves): Move to...
* guix/combinators: ... here.  New file.
* tests/utils.scm ("fold2, 1 list", "fold2, 2 lists")
(fold-tree tests): Move to...
* tests/combinators.scm: ... here.  New file.
* Makefile.am (MODULES, SCM_TESTS): Add them.
* gnu/packages.scm, gnu/packages/bootstrap.scm,
gnu/services/herd.scm, guix/build-system/gnu.scm,
guix/build-system/python.scm, guix/derivations.scm,
guix/gnu-maintenance.scm, guix/import/elpa.scm,
guix/scripts/archive.scm, guix/scripts/build.scm,
guix/scripts/graph.scm, guix/scripts/lint.scm,
guix/scripts/size.scm, guix/scripts/substitute.scm,
guix/serialization.scm, guix/store.scm, guix/ui.scm: Adjust imports
accordingly.
 2016-05-04 23:35:55 +02:00
Ludovic Courtès 4b6fa8b339
utils: Remove 'split'. 
This procedure was redundant with SRFI-1's 'break'.

* guix/utils.scm (split): Remove.
* tests/utils.scm ("split, element is in list")
("split, element is not in list"): Remove.
 2016-05-04 23:35:55 +02:00
Ludovic Courtès 6aaf3ea62d
environment: Use 'break' instead of 'split'. 
* guix/scripts/environment.scm (parse-args): Use 'break' instead of
'split'.
 2016-05-04 23:35:55 +02:00
Ludovic Courtès 8bf92e3904
services: herd: Move UI handling to 'guix system'. 
This makes (gnu services herd) independent of (guix ui).

* gnu/services/herd.scm (&shepherd-error, &service-not-found-error)
(&action-not-found-error, &action-exception-error)
(&unknown-shepherd-error): New error condition types.
(report-action-error): Remove.
(raise-shepherd-error): New procedure.
(display-message): Do not use 'info' and '_'.
(invoke-action): Use 'raise-shepherd-error' instead of
'report-action-error'.  Do not use 'warning'.
(current-services): Do not use 'warning'.
* guix/scripts/system.scm (with-shepherd-error-handling): New macro.
(report-shepherd-error, call-with-service-upgrade-info): New
procedures.
(upgrade-shepherd-services): Use it.
 2016-05-04 23:35:55 +02:00
Alex Kost af5640d1dd gnu: tvtime: Update to 1.0.10. 
* gnu/packages/tv.scm (tvtime): Update to 1.0.10.
[source]: Remove patches.
[inputs]: Add 'alsa-lib'.
* gnu/packages/patches/tvtime-gcc41.patch,
gnu/packages/patches/tvtime-pngoutput.patch,
gnu/packages/patches/tvtime-videodev2.patch,
gnu/packages/patches/tvtime-xmltv.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-05-04 23:08:39 +03:00
Alex Kost 41447b3199 gnu: libcue: Update to 2.1.0. 
* gnu/packages/cdrom.scm (libcue): Update to 2.1.0.
[build-system]: Use 'cmake-build-system' (the upstream moved to it).
[native-inputs]: Add 'bison' and 'flex'.
 2016-05-04 23:08:39 +03:00
Alex Kost ee5f1e5204 Update .mailmap. 
* .mailmap: Add new entries for Danny Milosavljevic, Nils Gillmann and
  Raymond Nicholson.
 2016-05-04 23:08:39 +03:00
Efraim Flashner 8c3e9a6a8d
gnu: gnupg: Update to 2.1.12. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.12.
[source]: Remove patch.
* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-04 22:20:45 +03:00
Jelle Licht cbb6239bed
gnu: jemalloc: Update to 4.1.0. 
* gnu/packages/jemalloc.scm (jemalloc): Upodate to 4.1.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-04 21:47:04 +03:00
Mark H Weaver 8c15e084fe gnu: imlib2: Update to 1.4.9 [fixes CVE-2011-5326, CVE-2016-{3993,3994}]. 
* gnu/packages/image.scm (imlib2): Update to 1.4.9.
[source]: Remove patch.
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-04 13:51:48 -04:00
David Thompson d663e5e600
gnu: imagemagick: Update to 6.9.3-10. 
Fixes CVE-2016–3714.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.3-10.
[source]: Remove patch.
* gnu/packages/patches/imagemagick-test-segv.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove patch file from distribution.
 2016-05-04 13:22:52 -04:00
Mark H Weaver 4e9d04a80b Merge branch 'master' into gnome-updates 2016-05-04 11:43:50 -04:00
Andy Wingo 11057c4b58 gnu: bitlbee: Incorporate upstream pre-release patches. 
* gnu/packages/messaging.scm (%bitlbee-buddy-nick-change-patch):
(%bitlbee-always-use-nicks-patch): New variables.
(bitlbee): Add new patches.
 2016-05-04 17:00:02 +02:00
Andy Wingo ac47ad99a4 gnu: bitlbee: Update to 3.4.2. 
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.2.
 2016-05-04 17:00:02 +02:00
Ricardo Wurmus 83b84fa812 gnu: edirect: Update to 4.10. 
* gnu/packages/bioinformatics.scm (edirect): Update to 4.10.
 2016-05-04 16:45:43 +02:00
Efraim Flashner 54df75582f
gnu: Add pinentry-qt. 
* gnu/packages/gnupg.scm (pinentry-qt): New variable.
 2016-05-04 12:57:23 +03:00
Efraim Flashner c607b7011c
gnu: Add pinentry-tty. 
* gnu/packages/gnupg.scm (pinentry-tty): New variable.
[arguments]: Add pinentry-tty flag.
(pinentry-gtk2): Inherit from pinentry-tty.
[inputs]: Use gtk+-2, glib for pinentry-gtk2 only.
[description]: Modify description based on inputs.
 2016-05-04 12:57:23 +03:00
Efraim Flashner 940f8d39a5
gnu: pinentry: Rename to pinentry-gtk2. 
* gnu/packages/gnupg.scm (pinentry): Rename to pinentry-gtk2.
Define pinentry as pinentry-gtk2.
 2016-05-04 12:57:23 +03:00
Ludovic Courtès 0a0884c991
gnu: cross: Fix typo. 
* gnu/packages/cross-base.scm (cross-gcc-arguments): Remove erroneous
'else' introduced in efc4eb1475.
 2016-05-03 23:43:49 +02:00
Roel Janssen 1b39a196f8
gnu: Add nlopt. 
* gnu/packages/maths.scm (nlopt): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-03 21:57:05 +02:00
Andreas Enge 5ef819cc01 gnu: redeclipse: Rename to red-eclipse. 
* gnu/packages/games.scm (redeclipse): Rename to...
(red-eclipse): ...this.

This is a follow-up to commit 5b8a85431d,
which changed only the name field of the package.
 2016-05-03 21:25:31 +02:00
Kei Yamashita 5b8a85431d gnu: Rename redeclipse package to red-eclipse. 
* gnu/packages/games.scm (redeclipse): Rename to...
(red-eclipse): ...this.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-05-03 19:48:15 +02:00
Mark H Weaver 3c1d2981ff gnu: openssl: Replace with 1.0.2h [security fixes]. 
Fixes CVE-2016-{2105,2106,2107,2109,2176}.

* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl/fixed): New variable.
 2016-05-03 13:31:50 -04:00
Ludovic Courtès e760ec4187
gnu: gcc: Add 6.1.0. 
* gnu/packages/gcc.scm (gcc-6): New variable.
* gnu/packages/commencement.scm (gcc-toolchain-6): New variable.
 2016-05-03 17:45:29 +02:00
Jan Nieuwenhuizen efc4eb1475
gnu: cross: Use CROSS_*_INCLUDE_PATH for system headers. 
* gnu/packages/patches/gcc-cross-environment-variables.patch: Also use CROSS_
variants: CROSS_C_INCLUDE_PATH, CROSS_CPLUS_INCLUDE_PATH,
CROSS_OBJC_INCLUDE_PATH, CROSS_OBJCPLUS_INCLUDE_PATH to be used for system
libraries, see
https://lists.gnu.org/archive/html/guix-devel/2016-04/msg00620.html.
* gnu/packages/cross-base.scm (cross-gcc, cross-gcc-arguments, cross-libc):
Use CROSS_*_INCLUDE_PATH (WAS: CPATH).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-03 17:45:29 +02:00