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42730 Commits

Author SHA1 Message Date
Eric Bavier 5cfed7efc8
gnu: openmpi: Let configure enable PSM based on inputs. 
This fixes OpenMPI builds on systems not supported by the PSM packages.

* gnu/packages/mpi.scm (openmpi)[arguments]: Remove '--enable-psm' and
'--enable-psm2' from #:configure-flags.
 2019-02-20 22:18:45 -06:00
Danny Milosavljevic de6ad8c29a
gnu: rust: Fix build of rust 1.28.0, rust 1.29.2. 
Follow-up to d199a4c7b4.

* gnu/packages/rust.scm (rust-1.28)[inputs]: Use llvm-6 instead of llvm.
 2019-02-20 23:52:41 +01:00
Brett Gilio 306e9592de
gnu: bear: Update to 2.3.13. 
* gnu/packages/build-tools.scm (bear): Update to 2.3.13.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-20 22:03:11 +01:00
Paul Garlick 7a82074ca6
gnu: python-fenics-dijitso: Fix build. 
* gnu/packages/simulation.scm (python-fenics-dijitso)[arguments]: Skip
parallel tests.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-20 21:39:35 +01:00
Brett Gilio 14afee3e8b
gnu: Add r-sloop. 
* gnu/packages/cran.scm (r-sloop): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-20 21:20:12 +01:00
Brett Gilio a023d43d48
gnu: r-geometry: Update to 0.4.0. 
* gnu/packages/cran.scm (r-geometry): Update to 0.4.0.
[propagated-inputs]: Add r-lpsolve, r-rcpp, and r-cppprogress.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-20 17:26:33 +01:00
Brett Gilio 34bac6c3ea
gnu: r-modelr: Update to 0.1.4. 
* gnu/packages/cran.scm (r-modelr): Update to 0.1.4.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-20 17:22:32 +01:00
Danny Milosavljevic 0d5c5b1b64
gnu: fakeroot: Enable ACL support. 
* gnu/packages/linux.scm (fakeroot)[native-inputs]: Add acl.
[arguments]<#:phases>[setenv]: New phase.
 2019-02-20 17:01:56 +01:00
Marius Bakke 78b2eb1ad3
gnu: xclock: Update to 1.0.8. 
* gnu/packages/xorg.scm (xclock): Update to 1.0.8.
[home-page]: Set to source repository.
 2019-02-20 16:40:33 +01:00
Marius Bakke 7bc7eda4b9
gnu: xvinfo: Update to 1.1.4. 
* gnu/packages/xorg.scm (xvinfo): Update to 1.1.4.
[home-page]: Set to source repository.
 2019-02-20 16:40:33 +01:00
Marius Bakke ca1d735c54
gnu: xrdb: Update to 1.2.0. 
* gnu/packages/xorg.scm (xrdb): Update to 1.2.0.
[home-page]: Set to source repository.
 2019-02-20 16:40:33 +01:00
Marius Bakke f73fb79c80
gnu: xlsatoms: Update to 1.1.3. 
* gnu/packages/xorg.scm (xlsatoms): Update to 1.1.3.
[home-page]: Set to source repository.
 2019-02-20 16:40:32 +01:00
Marius Bakke afee35bcfd
gnu: xhost: Update to 1.0.8. 
* gnu/packages/xorg.scm (xhost): Update to 1.0.8.
[home-page]: Set to source repository.
 2019-02-20 16:40:32 +01:00
Marius Bakke bcc39dad9d
gnu: xev: Update to 1.2.3. 
* gnu/packages/xorg.scm (xev): Update to 1.2.3.
[home-page]: Set to source repository.
 2019-02-20 16:40:32 +01:00
Marius Bakke 2bf5097784
gnu: xmodmap: Update to 1.0.10. 
* gnu/packages/patches/xmodmap-asprintf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xorg.scm (xmodmap): Update to 1.0.10.
[source](patches): Remove.
[home-page]: Set to source repository.
 2019-02-20 16:40:32 +01:00
Marius Bakke c7f5c3ea20
gnu: OpenSSL: Don't use NAME in source URI. 2019-02-20 16:40:32 +01:00
Marius Bakke 799de4687f
gnu: OpenSSL: Remove obsolete code. 
* gnu/packages/tls.scm (openssl-next)[arguments]: Remove GCC4 workaround.
 2019-02-20 16:40:32 +01:00
Pierre Neidhardt 4727e69aa0
gnu: emacs-evil-collection: Update to 20190220. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190220.
 2019-02-20 16:18:39 +01:00
Pierre Neidhardt 266c97cb6d
gnu: emacs-helm-eww: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-helm-eww): Update to 1.1.
 2019-02-20 16:14:47 +01:00
Pierre Neidhardt f81efdcbdb
gnu: emacs-helm-slime: Update to 0.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm-slime): Update to 0.2.0.
 2019-02-20 16:12:58 +01:00
Pierre Neidhardt e77c7210f0
gnu: Add emacs-orgit. 
* gnu/packages/emacs-xyz.scm (emacs-orgit): New variable.
 2019-02-20 11:08:13 +01:00
Brett Gilio bf6c8960c6
gnu: r-lava: Update to 1.6.5. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.5.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-20 09:36:24 +01:00
Efraim Flashner 20801f9da8
gnu: Add micropython. 
* gnu/packages/python.scm (micropython): New variable.
 2019-02-20 09:09:47 +02:00
Efraim Flashner b6f69340bb
gnu: owncloud-client: Update to 2.5.3.11470. 
* gnu/packages/sync.scm (owncloud-client): Update to 2.5.3.11470.
 2019-02-20 09:06:43 +02:00
Efraim Flashner 2b371f4dd5
gnu: Don't use the store path in the .desktop file. 
This fixes bug#30228.

* gnu/packages/sync.scm (owncloud-client)[arguments]: Add a custom phase
to substitute the executable name for the full path to the binary.
Remove the 'patch-dot-desktop-files phase.
 2019-02-20 09:06:40 +02:00
Tobias Geerinckx-Rice c6d8817ec4
gnu: archivemount: Use HTTPS home page. 
* * gnu/packages/linux.scm (archivemount)[source, home-page]: Use HTTPS.
 2019-02-19 23:45:58 +01:00
Tobias Geerinckx-Rice 903deeea53
gnu: archivemount: Update to 0.8.12. 
* gnu/packages/linux.scm (archivemount): Update to 0.8.12.
 2019-02-19 23:45:57 +01:00
Tobias Geerinckx-Rice cf0ea81579
gnu: kodi: Update to 18.1. 
* gnu/packages/kodi.scm (kodi): Update to 18.1.
 2019-02-19 23:45:57 +01:00
Tobias Geerinckx-Rice ae67d70daa
gnu: rng-tools: Update to 6.7. 
* gnu/packages/linux.scm (rng-tools): Update to 6.7.
[arguments]: Add ‘--without-pkcs11’ to #:configure-flags to avoid a new
dependeny on libp11.
 2019-02-19 23:45:57 +01:00
Tobias Geerinckx-Rice 3351f42acf
gnu: libtermkey: Update to 0.21. 
* gnu/packages/terminals.scm (libtermkey): Update to 0.21.
 2019-02-19 23:45:57 +01:00
Tobias Geerinckx-Rice 49093d759c
gnu: libtermkey: Don't use NAME in source URI. 
* gnu/packages/terminals.scm (libtermkey)[source]: Hard-code NAME.
 2019-02-19 23:45:56 +01:00
Tobias Geerinckx-Rice ebf8048d14
gnu: javacc: Don't use unstable tarball. 
* gnu/packages/java.scm (javacc)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-19 23:45:56 +01:00
Tobias Geerinckx-Rice 6b66e47052
gnu: javacc: Update to 7.0.4. 
* gnu/packages/java.scm (javacc): Update to 7.0.4.
 2019-02-19 23:45:56 +01:00
Andreas Enge 4982c0c98d
gnu: ocaml@4.01: Remove the package, affected by a CVE, and its dependent 
packages.

This makes progress towards fixing <https://bugs.gnu.org/27462>.

* gnu/packages/ocaml.scm (ocaml-4.01, ocaml4.01-findlib, ocaml4.01-ounit,
ocaml4.01-camlzip, ocaml4.01-qtest, ocaml4.01-bisect, ocaml4.01-sqlite3,
ocaml4.01-csv, ocaml4.01-xmlm, ocaml4.01-batteries, ocaml4.01-gsl): Remove
variables.
(ocaml-batteries, ocaml-bisect)[properties]: Remove ocaml4.01-variant.
* gnu/packages/machine-learning.scm (ocaml4.01-mcl): Remove variable.
 2019-02-19 22:59:06 +01:00
Andreas Enge 2e125ece09
gnu: pplacer: Remove the package, which is affected by a CVE on ocaml@4.01. 
This makes progress towards fixing <https://bugs.gnu.org/27462>.

* gnu/packages/bioinformatics.scm (pplacer, pplacer-scripts): Remove
variables.
 2019-02-19 22:37:02 +01:00
Leo Famulari c12b234695
gnu: libgd: Fix CVE-2019-{6977,6978}. 
* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd/fixed): New variable.
* gnu/packages/patches/gd-CVE-2019-6977.patch,
gnu/packages/patches/gd-CVE-2019-6978.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-02-19 15:47:35 -05:00
Leo Famulari a7db61a55d
gnu: Add Magic-Wormhole. 
* gnu/packages/magic-wormhole.scm (magic-wormhole): New variable.
 2019-02-19 14:34:31 -05:00
Leo Famulari 6924a2bdc5
gnu: Add magic-wormhole-transit-relay. 
* gnu/packages/magic-wormhole.scm (magic-wormhole-transit-relay): New variable.
 2019-02-19 14:34:31 -05:00
Leo Famulari c9b36f450b
gnu: Add magic-wormhole-mailbox-server. 
* gnu/packages/magic-wormhole.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-02-19 14:34:31 -05:00
Leo Famulari 951c7093a1
gnu: Add python-autobahn. 
* gnu/packages/python-web.scm (python-autobahn): New variable.
 2019-02-19 14:34:31 -05:00
Leo Famulari 215f3db0e3
gnu: Add python-txtorcon. 
* gnu/packages/python-crypto.scm (python-txtorcon): New variable.
 2019-02-19 14:34:31 -05:00
Leo Famulari fc681a18f5
gnu: Add python-spake2. 
* gnu/packages/python-crypto.scm (python-spake2): New variable.
 2019-02-19 14:34:31 -05:00
Leo Famulari 0a90c78926
gnu: Add python-hkdf. 
* gnu/packages/python-crypto.scm (python-hkdf): New variable.
 2019-02-19 14:34:31 -05:00
Leo Famulari 00adbac6d2
gnu: Add python-treq. 
* gnu/packages/python-web.scm (python-treq): New variable.
 2019-02-19 14:34:30 -05:00
Leo Famulari e5ba2fe30a
gnu: python-twisted: Update to 17.5.0 
* gnu/packages/python-xyz.scm (python-twisted, python2-twisted): Update
to 17.5.0.
[propagated-inputs]: Add python-hyperlink.
 2019-02-19 14:34:30 -05:00
Leo Famulari 68460fbb9d
gnu: Add python-hyperlink. 
* gnu/packages/python-web.scm (python-hyperlink): New variable.
 2019-02-19 14:34:30 -05:00
Leo Famulari d5bbf66d71
gnu: Add python-txaio. 
* gnu/packages/python-xyz.scm (python-txaio): New variable.
 2019-02-19 14:34:30 -05:00
Leo Famulari b742c00656
gnu: Add python-humanize. 
* gnu/packages/python-xyz.scm (python-humanize): New variable.
 2019-02-19 14:34:30 -05:00
Leo Famulari a4fc80254a
gnu: LibreOffice: Update to 6.1.5.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.5.2.
[source]: Remove obsolete Poppler patches.
 2019-02-19 09:47:02 -05:00
Tobias Geerinckx-Rice 5cfb647c52
gnu: perl-test-www-mechanize-catalyst: Update to 0.62. 
* gnu/packages/web.scm (perl-test-www-mechanize-catalyst): Update to 0.62.
 2019-02-19 15:34:10 +01:00