Commit Graph

10473 Commits

Author SHA1 Message Date
Andy Patterson 5aa608a7e8
gnu: Add cl-ppcre.
* gnu/packages/lisp.scm (cl-ppcre, sbcl-cl-pprcre, ecl-cl-pprcre): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 3c55c780f9
gnu: Add cl-flexi-streams.
* gnu/packages/lisp.scm (cl-flexi-streams, sbcl-flexi-streams)
(ecl-flexi-streams): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 059cab307f
gnu: Add cl-trivial-gray-streams.
* gnu/packages/lisp.scm (cl-trivial-gray-streams)
(sbcl-trivial-gray-streams, ecl-trivial-gray-streams): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 8662809d1b
gnu: Add cl-bordeaux-threads.
* gnu/packages/lisp.scm (cl-bordeaux-threads, sbcl-bordeaux-threads)
(ecl-bordeaux-threads): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 86022c926b
gnu: Add cl-fiveam.
* gnu/packages/lisp.scm (cl-fiveam, sbcl-fiveam, ecl-fiveam): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson a72debb7cc
gnu: Add cl-alexandria.
* gnu/packages/lisp.scm (cl-alexandria, sbcl-alexandria)
(ecl-alexandria): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Ben Woodcroft 53aec0999f
gnu: bundler: Update to 1.13.2.
* gnu/packages/ruby.scm (bundler): Update to 1.13.2.
2016-10-08 22:47:18 +10:00
Ben Woodcroft c2ad4d701e
gnu: python-xlrd: Update to 1.0.0.
* gnu/packages/python.scm (python-xlrd, python2-xlrd): Update to 1.0.0.
2016-10-08 22:29:59 +10:00
Ben Woodcroft f49511dbff
gnu: ruby-mime-types-data: Update to 3.2016.0521.
* gnu/packages/ruby.scm (ruby-mime-types-data): Update to 3.2016.0521.
2016-10-08 22:29:58 +10:00
Ben Woodcroft d034c779eb
gnu: ruby-tzinfo-data: Update to 1.2016.7.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2016.7.
2016-10-08 22:29:58 +10:00
Ben Woodcroft 5ed00e13d2
gnu: ruby-domain-name: Update to 0.5.20160826.
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20160826.
2016-10-08 22:29:58 +10:00
Ben Woodcroft a751afb217
gnu: r-mgcv: Update to 1.8-15.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-15.
2016-10-08 22:29:58 +10:00
Ben Woodcroft d91cb67dd7
gnu: ruby-sequel: Update to 4.39.0.
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.39.0.
2016-10-08 22:29:55 +10:00
Ricardo Wurmus 7fd30d1be4
gnu: yoshimi: Update to 1.4.1.
* gnu/packages/music.scm (yoshimi): Update to 1.4.1.
[arguments]: Add build phase "find-ncurses".
2016-10-08 14:03:56 +02:00
Ben Woodcroft 9602e3cce9
gnu: python2-dendropy: Fix tests.
* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
2016-10-08 21:38:17 +10:00
Leo Famulari f803f775d2
gnu: vigra: Workaround rounding error in test suite on 32-bit CPUs.
* gnu/packages/image.scm (vigra)[arguments]: Pass '-ffloat-store' to
C_FLAGS and CXX_FLAGS.
2016-10-07 22:44:30 -04:00
Ricardo Wurmus 382aacc5a3
gnu: drumstick: Update to 1.1.0.
* gnu/packages/music.scm (drumstick): Update to 1.1.0.
2016-10-08 00:15:53 +02:00
Ricardo Wurmus e35ce6893c
gnu: tbb: Update to 2017_20160916.
* gnu/packages/tbb.scm (tbb): Update to 2017_20160916.
2016-10-08 00:03:24 +02:00
Efraim Flashner fb29e737d4
gnu: ncdu: Update to 1.12.
* gnu/packages/ncdu.scm (ncdu): Update to 1.12.
[source]: Use https.
[license]: Use https.
[home-page]: Use https.
2016-10-07 14:26:12 +03:00
Ricardo Wurmus b314360f30
gnu: abbaye: Update source URL.
* gnu/packages/games.scm (abbaye)[source]: Update tarball URL.
2016-10-07 09:22:44 +02:00
Leo Famulari ae336f8b84
gnu: khal: Update to 0.8.4.
* gnu/packages/calendar.scm (khal): Update to 0.8.4.
2016-10-07 01:48:45 -04:00
Leo Famulari 7ca97fae36
gnu: lvm2: Make sure compiled objects are stripped.
* gnu/packages/linux.scm (lvm2)[arguments]: Add 'make-objects-writeable' phase.
2016-10-06 17:43:44 -04:00
Leo Famulari 123c0ffb87
gnu: lvm2: Update to 2.02.166.
* gnu/packages/linux.scm (lvm2): Update to 2.02.166.
2016-10-06 17:43:44 -04:00
Leo Famulari 3afbc6b3c3
gnu: lvm2: Use 'modify-phases'.
* gnu/packages/linux.scm (lvm2)[arguments]: Use 'modify-phases'.
2016-10-06 17:43:39 -04:00
Efraim Flashner 59fed2b609
gnu: nginx: Update to 1.11.4.
* gnu/packages/web.scm (nginx): Update to 1.11.4.
[source] Use https.
[home-page]: Use https.
2016-10-06 22:01:00 +03:00
Thomas Danckaert 0f43f8354c
gnu: Add hdf-eos5.
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-06 18:14:45 +02:00
8p8c b94ee996ce
gnu: font-hack: Remove empty doc directory.
* gnu/packages/fonts.scm (font-hack)[arguments]: Remove superfluous code
in #:builder.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:59:05 +08:00
Andy Patterson fb7dc6d647
gnu: ecl: Honour XDG_DATA_DIRS/ecl-bundle-systems.
* gnu/packages/lisp.scm (ecl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:33:55 +08:00
Andy Patterson 8d0489aeb6
gnu: sbcl: Honour XDG_DATA_DIRS/sbcl-bundle-systems.
* gnu/packages/lisp.scm (asdf-substitutions): New variable.
(sbcl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:33:55 +08:00
Ricardo Wurmus eb0ff8a382
gnu: Add ghc-pandoc-citeproc.
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus bfdfb0f63f
gnu: Add ghc-xml-conduit.
* gnu/packages/haskell.scm (ghc-xml-conduit): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus e9ef2c51d5
gnu: Add ghc-xml-types.
* gnu/packages/haskell.scm (ghc-xml-types): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus 1aa45bbf6f
gnu: Add ghc-conduit-extra.
* gnu/packages/haskell.scm (ghc-conduit-extra): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus 9ce764b689
gnu: Add ghc-rfc5051.
* gnu/packages/haskell.scm (ghc-rfc5051): New variable.
2016-10-06 14:18:24 +02:00
Ricardo Wurmus 37e02bf65b
gnu: Add ghc-hs-bibutils.
* gnu/packages/haskell.scm (ghc-hs-bibutils): New variable.
2016-10-06 14:18:24 +02:00
Ricardo Wurmus b376463552
gnu: ghc-streaming-commons: Remove standard packages from inputs.
The "directory" and "transformers" modules are part of GHC and should
not be among the inputs to avoid conflicts.

* gnu/packages/haskell.scm (ghc-streaming-commons)[inputs]: Remove
"ghc-directory" and "ghc-transformers".
2016-10-06 14:18:21 +02:00
Ricardo Wurmus fc47c7d635
gnu: Add r-bsgenome-celegans-ucsc-ce10.
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New
variable.
2016-10-06 10:33:43 +02:00
Leo Famulari 6a4cbc6f12
gnu: nss-certs and nss: Update to 3.27.1.
* gnu/packages/certs.scm (nss-certs): Update to 3.27.1.
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.1.
2016-10-05 20:04:50 -04:00
Leo Famulari 1459476089
gnu: e2fsprogs: Fix typo in comment.
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Fix typo in comment.
2016-10-05 18:59:29 -04:00
Leo Famulari 7d45365684
gnu: e2fsprogs: Disable parallel build.
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Add #:parallel-build? #f.
2016-10-05 17:41:44 -04:00
Leo Famulari 87312f8aa1
gnu: json-c: Update to 0.12.1.
* gnu/packages/web.scm (json-c): Update to 0.12.1.
2016-10-05 17:38:48 -04:00
Leo Famulari 813062a5f7
gnu: libxvmc: Fix CVE-2016-7953.
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxvmc)[replacement]: New field.
(libxvmc/fixed): New variable.
2016-10-05 17:37:23 -04:00
Leo Famulari e73631a906
gnu: libxv: Fix CVE-2016-5407.
* gnu/packages/patches/libxv-CVE-2016-5407.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxv)[replacement]: New field.
(libxv/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari 1f90b80f8b
gnu: libxtst: Fix CVE-2016-{7951,7952}.
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxtst)[replacement]: New field.
(libxtst/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari 666d40193c
gnu: libxrender: Fix CVE-2016-{7949,7950}.
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libxrender)[replacement]: New field.
(libxrender/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari a300db1c7f
gnu: libxrandr: Fix CVE-2016-{7947,7948}.
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxrandr)[replacement]: New field.
(libxrandr/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari b78ba2274f
gnu: libxi: Fix CVE-2016-{7945,7946}.
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxi)[replacement]: New field.
(libxi/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari b50c6bf2a8
gnu: libxfixes: Fix CVE-2016-7944.
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxfixes)[replacement]: New field.
(libxfixes/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari 13c10b4ca4
gnu: libx11: Fix CVE-2016-{7942,7943}.
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11/fixed): New variable.
2016-10-05 17:37:15 -04:00
ng0 81d5a62fb1
gnu: Remove lispf4.
The package in its current state is unusable and documentation with unclear
licenses is included.

Also, the file 'lispf42.c' (and possible others) is generated C code and
thus not "source code" as we define it.

* gnu/packages/lisp.scm (lispf4): Delete variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-05 16:23:56 -04:00
Tobias Geerinckx-Rice 151df6ab3d
gnu: btrfs-progs: Update to 4.8.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.
2016-10-05 22:07:21 +02:00
Leo Famulari bda45da336
gnu: libass: Update to 0.13.4 [fixes CVE-2016-{7969,7970,7972}.
* gnu/packages/video.scm (libass): Update to 0.13.4.
2016-10-05 16:04:26 -04:00
Efraim Flashner a4796b29e1
gnu: gnucash: Update to 2.6.14.
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.14.
2016-10-05 20:42:49 +03:00
Danny Milosavljevic b04ca7a12b
gnu: Add sunxi-tools.
* gnu/packages/admin.scm (sunxi-tools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-05 18:50:52 +02:00
Leo Famulari 517318adf0
gnu: Add Vc.
* gnu/packages/maths.scm (vc): New variable.
2016-10-05 12:49:41 -04:00
Ludovic Courtès 9d50da7060
gnu: wordnet: Make sure the self-reference is visible to the GC.
Before that, "guix gc --references $(guix build wordnet)" would not show
WordNet itself, erroneously so.

* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -fno-builtin-strcpy
  to #:configure-flags.
2016-10-05 18:35:55 +02:00
Ludovic Courtès 939f87438c
gnu: wordnet: Compile with optimizations.
* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -O2 to
  #:configure-flags.
2016-10-05 18:35:55 +02:00
Kei Kebreau cd1869cdbd
gnu: Add hyperrogue.
* gnu/packages/games.scm (hyperrogue): New variable.
2016-10-05 10:10:36 -04:00
Ludovic Courtès 358db0041f
gnu: grub: Make dependency on mdadm explicit.
* gnu/packages/grub.scm (grub)[arguments]: Path getroot.c in
'patch-stuff' phase.
[inputs]: Add MDADM.
2016-10-05 15:11:08 +02:00
Ludovic Courtès ab2cc5cde1
gnu: gsl: Disable failing tests on i686.
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
2016-10-05 15:11:08 +02:00
Leo Famulari 50948a9026
gnu: git: Update to 2.10.1.
* gnu/packages/version-control.scm (git): Update to 2.10.1.
2016-10-05 01:57:51 -04:00
Ludovic Courtès acbf2c4f60
gnu: guix: Honor the user's 'GUILE_LOAD_PATH'.
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Use
'prefix' when wrapping 'guix' for 'GUILE_LOAD_PATH'.
2016-10-04 22:40:46 +02:00
Ludovic Courtès 8cecd22e4a
gnu: Add GoAccess.
* gnu/packages/web.scm (goaccess): New variable.
2016-10-04 17:44:27 +02:00
Ludovic Courtès a9764b7d2e
gnu: pies: Update to 1.3.
* gnu/packages/admin.scm (pies): Update to 1.3.
[arguments]: New field.
2016-10-04 16:38:00 +02:00
Ludovic Courtès 9d3425f24a
gnu: global: Update to 6.5.5.
* gnu/packages/code.scm (global): Update to 6.5.5.
2016-10-04 16:37:59 +02:00
Ludovic Courtès 8c82e1c9d3
gnu: gsl: Update to 2.2.1.
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
2016-10-04 16:37:59 +02:00
Ludovic Courtès bac67a5a5c
gnu: direvent: Update to 5.1.
* gnu/packages/admin.scm (direvent): Update to 5.1.
[arguments]: Augment 'patch-/bin/sh' phase to patch 'progman.c' and
'testsuite'.
2016-10-04 16:37:59 +02:00
Ludovic Courtès d35f8c7cb6
gnu: gnu-c-manual: Update to 0.2.5.
* gnu/packages/gcc.scm (gnu-c-manual): Update to 0.2.5.
2016-10-04 16:37:59 +02:00
Ludovic Courtès a884fa2141
gnu: rush: Update to 1.8.
* gnu/packages/rush.scm (rush): Update to 1.8.
[source]: Remove 'patches'.
* gnu/packages/patches/cpio-gets-undeclared.patch,
gnu/packages/patches/rush-CVE-2013-6889.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-10-04 16:37:59 +02:00
Leo Famulari 491dbac415
gnu: cryptsetup: Update to 1.7.2.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.2.
[source]: Use kernel mirror.
[home-page]: Update URL.
2016-10-04 10:24:46 -04:00
Ben Woodcroft 2c3eb4b85b
gnu: metabat: Update to 0.32.4-1.cbdca756.
* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756.
* gnu/packages/patches/metabat-remove-compilation-date.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-10-04 22:02:52 +10:00
Ludovic Courtès 47c14714a4
gnu: fish: Do not use the bundled PCRE2.
* gnu/packages/shells.scm (fish)[inputs]: Add PCRE2.
2016-10-04 11:26:45 +02:00
Arun Isaac a8d3bc473d
gnu: fish: Add input bc.
Fixes <http://bugs.gnu.org/24433>.

* gnu/packages/shells.scm (fish)[inputs]: Add bc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-04 11:26:45 +02:00
Ricardo Wurmus c5d17d50d0
gnu: warzone2100: Update to 3.2.1.
* gnu/packages/games.scm (warzone2100): Update to 3.2.1.
[arguments]: Remove phase "set-sdl-paths", add phase
"link-tests-with-qt", add phase "remove-reference-to-missing-file".
[inputs]: Replace "qt-4" with "qt", replace "sdl-union" with
"sdl2", add "openssl".
2016-10-04 10:21:38 +02:00
Ricardo Wurmus 5c31e981bb
gnu: ruby-nokogumbo: Move "build-gemspec" phase after "unpack".
* gnu/packages/ruby.scm (ruby-nokogumbo)[arguments]: Move
"build-gemspec" phase after "unpack".
2016-10-04 08:54:55 +02:00
Ricardo Wurmus 92a312dc86
gnu: python-pathlib: Disable tests.
* gnu/packages/python.scm (python-pathlib)[arguments]: Disable tests.
2016-10-04 08:54:55 +02:00
Ricardo Wurmus ced12a7bff
gnu: ghmm: Run tests after install.
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check"
phase after "install"; add phase "fix-PYTHONPATH".
2016-10-04 08:54:55 +02:00
Ricardo Wurmus 4262d178a7
gnu: raincat: Add missing input.
* gnu/packages/games.scm (raincat)[inputs]: Add freeglut.
2016-10-04 08:48:55 +02:00
Ricardo Wurmus d910d584b7
gnu: supertux: Update to 0.5.0.
* gnu/packages/games.scm (supertux): Update to 0.5.0.
[arguments]: Add flag to disable static boost libraries.
2016-10-04 08:38:09 +02:00
Leo Famulari c88cd83b71
gnu: parallel: Update to 20160922.
* gnu/packages/parallel.scm (parallel): Update to 20160922.
2016-10-03 23:59:29 -04:00
Mark H Weaver 1927839dcb
gnu: linux-libre: Update to 4.8.
* gnu/packages/linux.scm (linux-libre): Update to 4.8.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: Delete files.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
2016-10-03 22:05:51 -04:00
Mark H Weaver e9b718a05a
gnu: nss: Increase build timeout to 60 hours.
* gnu/packages/gnuzilla.scm (nss)[properties]: Increase build timeout to
60 hours.
2016-10-03 22:05:32 -04:00
ng0 6adda006be
gnu: gnunet: Add inputs.
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add perl, jansson, nss, gmp, bluez,
glib, libogg.
[native-inputs]: Move python-2 from here ...
[inputs]: ... to here.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-03 17:43:23 -04:00
Ludovic Courtès 0f7cd95b81
gnu: gctp: 'license' field now has a <license> value.
* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
2016-10-03 23:20:23 +02:00
Ludovic Courtès b1cb9f281a
gnu: libgcrypt@1.7: Replacement now has an accurate 'version' field.
* gnu/packages/gnupg.scm (libgcrypt-1.7.3)[version]: New field.
2016-10-03 23:16:48 +02:00
Ludovic Courtès 8389e6f06e
gnu: openssl@1.0: Replacement now has an accurate 'version' field.
* gnu/packages/tls.scm (openssl-1.0.2j)[name, version]: New fields.
2016-10-03 23:16:48 +02:00
Leo Famulari b38e97e03b
gnu: libarchive: Fix several security issues.
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive/fixed): New variable.
* gnu/packages/patches/libarchive-7zip-heap-overflow.patch,
gnu/packages/patches/libarchive-fix-symlink-check.patch,
gnu/packages/patches/libarchive-fix-filesystem-attacks.patch,
gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2016-10-03 16:52:28 -04:00
Leo Famulari 85358aef8e
gnu: perl-dbd-mysql: Update to 4.037 [fixes CVE-2016-1246].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.037.
2016-10-03 14:39:11 -04:00
Ricardo Wurmus d79e8f65b5
gnu: ghc-process: Replace reference to /bin/sh.
* gnu/packages/haskell.scm (ghc-process)[arguments]: Add phases
"patch-reference-to-/bin/sh" to replace reference to /bin/sh.
2016-10-02 17:31:40 +02:00
Ricardo Wurmus 2d47cee25b
gnu: Do not propagate inputs in haskell.scm.
* gnu/packages/haskell.scm
(ghc-streaming-commons)[propagated-inputs]: Move ghc-random...
[inputs]: ...to here; remove ghc-async, add ghc-directory, add
ghc-transformers; move ghc-quickcheck, ghc-hspec...
[native-inputs]: ...to here; add hspec-discover.

(ghc-test-framework)[propagated-inputs]: Move all from here...
[inputs]: ...to here; move ghc-hunit and ghc-quickcheck...
[native-inputs]: ...to here.

(ghc-attoparsec)[propagated-inputs]: Move ghc-scientific...
[inputs]: ...to here; move ghc-quickcheck, ghc-quickcheck-unicode,
ghc-test-framework, ghc-test-framework-quickcheck2, ghc-vector...
[native-inputs]: ...to here.

(ghc-zip-archive)[propagated-inputs]: Move all inputs from here...
[inputs]: ...to here; move ghc-hunit from here...
[native-inputs]: ...to here.

(ghc-network-uri)[inputs]: Add ghc-parsec; move ghc-hunit from here...
[native-inputs]: ...to here.
[propagated-inputs]: Remove.

(ghc-wai)[propagated-inputs]: Move all inputs from here...
[inputs]: ...to here; move ghc-quickcheck, ghc-hunit, and ghc-hspec from
here...
[native-inputs]: ...to here.  Add hspec-discover.

(ghc-wai-extra)[propagated-inputs]: Remove ghc-hspec and ghc-hunit; move
all other inputs from here...
[inputs]: ...to here.
[native-inputs]: Add hspec-discover, ghc-hspec, and ghc-hunit.

(ghc-resourcet, ghc-xss-sanitize, ghc-parsec, ghc-vector, ghc-http,
ghc-base-compat, ghc-base-orphans, ghc-word8)[inputs]: Move all inputs
from here...
[native-inputs]: ...to here.

(ghc-haddock-library, ghc-hspec-contrib, ghc-base-compat,
ghc-base-orphans, ghc-fast-logger, ghc-word8, ghc-aeson-qq,
ghc-logging-facade, ghc-mockery, ghc-yaml, ghc-hslua)[native-inputs]:
Add hspec-discover.

(ghc-fast-logger)[inputs]: Move ghc-hspec from here...
[native-inputs]: ...to here.

(ghc-data-default,
ghc-data-default-instances-base,
ghc-data-default-instances-containers,
ghc-data-default-instances-dlist,
ghc-haddock-api,
ghc-happy,
ghc-haskell-src-exts,
ghc-resourcet,
ghc-xss-sanitize,
ghc-sdl-mixer,
ghc-sdl-image,
ghc-glut,
ghc-gluraw,
ghc-opengl,
cpphs,
ghc-old-time,
ghc-data-default-instances-old-locale,
cabal-install,
ghc-x11,
ghc-x11-xft,
ghc-hashable,
ghc-test-framework-hunit,
ghc-test-framework,
ghc-tf-random,
ghc-transformers-base,
ghc-unix-time,
ghc-http-types,
ghc-iproute,
ghc-regex-base,
ghc-regex-posix,
ghc-regex-tdfa-rc,
ghc-parsers,
ghc-trifecta,
ghc-distributive,
ghc-comonad,
ghc-polyparse,
ghc-profunctors,
ghc-reducers,
ghc-xml,
ghc-exceptions,
ghc-temporary,
ghc-temporary-rc,
ghc-smallcheck,
ghc-tasty-ant-xml,
ghc-quickcheck-instances,
ghc-quickcheck,
ghc-case-insensitive,
ghc-chasingbottoms,
ghc-unordererd-containers,
ghc-uniplate,
ghc-ansi-wl-pprint,
ghc-parsec,
ghc-vector,
ghc-vector-binary-instances,
ghc-http,
ghc-hspec,
ghc-hspec-contrib,
ghc-hspec-core,
ghc-hspec-meta,
ghc-vault,
ghc-monad-control,
ghc-blaze-builder,
ghc-blaze-markup,
ghc-blaze-html,
ghc-async,
ghc-optparse-applicative,
ghc-charset,
ghc-void,
ghc-kan-extensions,
ghc-statevar,
ghc-lens,
ghc-cheapskate,
ghc-semigroupoids,
ghc-contrvariant,
ghc-semigroups,
ghc-free,
ghc-adjunctions,
ghc-fast-logger,
ghc-doctest,
ghc-lifted-base,
ghc-tasty-quickcheck,
ghc-tasty-golden,
ghc-tasty,
ghc-cookie,
ghc-scientific,
ghc-aeson,
ghc-wai-logger,
ghc-pandoc-types,
ghc-texmath,
ghc-regex-pcre-builtin,
ghc-highlighting-kate,
ghc-cmark,
ghc-enclosed-exceptions,
ghc-th-lift,
ghc-th-expand-syns,
ghc-th-reify-many,
ghc-th-orphans,
ghc-haskell-src-meta,
ghc-aeson-qq,
ghc-conduit,
ghc-mockery,
ghc-yaml,
ghc-filemanip,
ghc-juicypixels,
ghc-hslua,
ghc-mime-types,
ghc-http-client,
ghc-hourglass,
ghc-pem,
ghc-asn1-types,
ghc-asn1-encoding,
ghc-asn1-parse,
ghc-tasty-kat,
ghc-cryptonite,
ghc-x509,
ghc-x509-store,
ghc-x509-validation,
ghc-x509-system,
ghc-tls,
ghc-socks,
ghc-connection,
ghc-http-client-tls,
ghc-pandoc)[propagated-inputs]: Move inputs from here...
[inputs]: ...to here.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus 88cf917b74
gnu: r-plotly: Update to 4.5.2.
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.2.
[propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add
r-lazyeval; add r-purrr; add r-tibble; add r-viridislite.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus a3c6445be5
gnu: Add r-purrr.
* gnu/packages/statistics.scm (r-purrr): New variable.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus c6ab73e8ff
gnu: Add r-viridislite.
* gnu/packages/statistics.scm (r-viridislite): New variable.
2016-10-02 17:31:36 +02:00
Mark H Weaver 6a703976f4
gnu: libotf: Fix source URI.
* gnu/packages/fontutils.scm (libotf)[source]: Fix suorce URI.
2016-10-02 10:49:22 -04:00
Ben Woodcroft 4bdc3df92d
gnu: vsearch: Update to 2.1.2.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.2.
2016-10-02 22:25:39 +10:00
Efraim Flashner 10bc741619
gnu: ffmpeg: Update to 3.1.4.
* gnu/packages/video.scm (ffmpeg): Update to 3.1.4.
2016-10-02 11:38:32 +03:00
Mark H Weaver 79992a3e6f
gnu: linux-libre: Update to 4.7.6.
* gnu/packages/linux.scm (linux-libre): Update to 4.7.6.
2016-10-01 18:22:43 -04:00
Mark H Weaver 2bfa61c034
gnu: linux-libre@4.4: Update to 4.4.23.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.23.
2016-10-01 18:20:28 -04:00
Ricardo Wurmus 09a86196e9
gnu: guitarix: Update to 0.35.1.
* gnu/packages/audio.scm (guitarix): Update to 0.35.1.
2016-10-01 22:31:10 +02:00
Ricardo Wurmus 89fa2219a7
gnu: eigen: Update to 3.2.9.
* gnu/packages/algebra.scm (eigen): Update to 3.2.9.
2016-10-01 21:36:36 +02:00
Ricardo Wurmus d70f5139da
gnu: julia: Update to 0.5.0.
* gnu/packages/julia.scm (libuv-julia): Update to commit
8d5131b6c1595920dd30644cd1435b4f344b46c8.
(libunwind-for-julia): New variable.
(julia): Update to 0.5.0.
[arguments]: Disable stripping of binaries; modify "prepare-deps" phase;
add "fix-llvm-flag" phase; add "set-home" phase; adjust
"hardcode-soname-map" phase; remove fix for "double-conversion" from
"fix-include-and-link-paths" phase; enable "repl" and "replcompletions"
tests; disable "backtrace", "compile", "replutil", and "cmdlineargs"
tests; remove USE_SYSTEM_RMATH flag; remove USE_SYSTEM_GRISU flag.
[inputs]: Replace "llvm-3.5" with "llvm"; replace "libunwind" with
"libunwind-for-julia"; remove "double-conversion"; remove "rmath-julia";
update "suitesparse" origin; replace "virtualenv" origin with
"python2-virtualenv".
[native-inputs]: Add "openssl".
2016-10-01 21:36:36 +02:00
Ricardo Wurmus 9b72ce60fb
gnu: utf8proc: Update to 2.0.2.
* gnu/packages/textutils.scm (utf8proc): Update to 2.0.2.
2016-10-01 21:36:35 +02:00
Leo Famulari 917de2511b
gnu: gd: Fix CVE-2016-7568.
* gnu/packages/patches/gd-CVE-2016-7568.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
2016-10-01 12:27:37 -04:00
Ivan Vilata i Balaguer 37356e0bf8
gnu: Add quickswitch-i3.
* gnu/packages/wm.scm (quickswitch-i3): New variable.
* gnu/packages/patches/quickswitch-fix-dmenu-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:56:11 +08:00
Ivan Vilata i Balaguer c165591d47
gnu: Add python-i3-py.
* gnu/packages/wm.scm (python-i3-py, python2-i3-py): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:44:44 +08:00
ng0 f1b61e26ae
gnu: Add emacs-rudel.
* gnu/packages/emacs.scm (emacs-rudel): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:22:31 +08:00
宋文武 df0e8a239b
gnu: shroud: Wrap 'shroud' with 'GUILE_LOAD_COMPILED_PATH'.
* gnu/packages/password-utils.scm (shroud)[arguments]: New field.
2016-10-01 08:50:48 +08:00
Leo Famulari ebb9b9a60c
gnu: tmux: Update to 2.3.
* gnu/packages/tmux.scm (tmux): Update to 2.3.
2016-09-30 19:49:08 -04:00
Leo Famulari bddf22b99e
gnu: libreoffice: Update to 5.1.5.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.5.2.
2016-09-30 01:17:24 -04:00
Danny Milosavljevic cfb7e269e9
gnu: xonsh: Remove bundled PLY.
* gnu/packages/shells.scm (xonsh)[source]: Add snippet to remove bundled
python-ply.
[inputs]: Add python-ply.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-29 17:13:05 -04:00
Julien Lepiller 86d8f6d3ef
services: Add 'openssh-service'.
* gnu/packages/ssh.scm (openssh)[arguments]: Set sysconfdir to /etc/ssh.
* gnu/services/ssh.scm (<openssh-configuration>): New record type.
(%openssh-accounts): New variable.
(openssh-activation, openssh-config-file, openssh-shepherd-service)
(openssh-service): New procedures.
(openssh-service-type): New variable.
* doc/guix.texi (Networking Services): Document 'openssh-services'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 23:11:48 +02:00
Arun Isaac 01c5c21a67
gnu: emacs: Build with m17n support.
* gnu/packages/emacs.scm (emacs): Build with m17n support.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
Arun Isaac a80b60f484
gnu: Add m17n-lib.
* gnu/packages/emacs.scm (m17n-lib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
Arun Isaac 154c71e003
gnu: Add m17n-db.
* gnu/packages/emacs.scm (m17n-db): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:32 +02:00
Leo Famulari 0da1b7062a
gnu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180].
* gnu/packages/adns.scm (c-ares): Update to 1.12.0.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
2016-09-29 11:18:52 -04:00
David Craven b9f7895d39
Revert "gnu: %default-extra-linux-options: Remove redundant options."
Options aren't redundant and are required for building the initrd.

This reverts commit 50dbc03647.
2016-09-29 12:59:37 +02:00
Ludovic Courtès d06ce0466f
gnu: dbus-c++: License has "or later" clause.
* gnu/packages/glib.scm (dbus-c++)[license]: Change to LGPL2.1+.
2016-09-29 09:01:22 +02:00
Ricardo Wurmus 2320e76b82
gnu: sra-tools: Fix build on i686.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
2016-09-28 22:30:41 +02:00
Efraim Flashner 37042a0fb4
gnu: tilda: Update to 1.3.3.
* gnu/packages/terminals.scm (tilda): Update to 1.3.3.
2016-09-28 21:38:38 +03:00
Stefan Reichoer 1d51585573
gnu: Add xonsh.
* gnu/packages/shells.scm (xonsh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-28 13:42:06 -04:00
Leo Famulari b2fe918302
gnu: attic: Superseded by borg.
* gnu/packages/backup.scm (attic)[properties]: New field.
2016-09-28 13:07:06 -04:00
Taylan Ulrich Bayırlı/Kammer 415ee287fa
gnu: nestopia-ue: Update to version 1.47. 2016-09-28 17:00:35 +02:00
Taylan Ulrich Bayırlı/Kammer dac65f90b6
gnu: higan: Update to version 101.
* gnu/packages/games.scm (higan): Update to version 101.
2016-09-28 17:00:12 +02:00
Thomas Danckaert b411517a19
gnu: git: Add input perl-term-readkey for 'git-svn'.
* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys.
[arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-09-28 21:23:47 +08:00
David Craven 7a0630035c
gnu: linux-libre-beagle-bone-black: Remove kernel variant.
linux-libre-beagle-bone-black is misslabeled. This kernel variant is
for the original beagle board.

* gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.
2016-09-28 12:40:12 +02:00
David Craven e4e9c0a083
gnu: make-linux-libre: Install device tree files.
* gnu/packages/linux.scm (make-linux-libre): Install device tree files.
2016-09-28 12:40:12 +02:00
David Craven 50dbc03647
gnu: %default-extra-linux-options: Remove redundant options.
* gnu/packages/linux.scm (%default-extra-linux-options): Remove
  redundant options.
2016-09-28 12:40:12 +02:00
David Craven 33619c3ae0
gnu: Add sdcc.
* gnu/packages/sdcc.scm (sdcc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-09-28 12:40:12 +02:00
David Craven a3af70aca8
gnu: Add picocom.
* gnu/packages/terminals.scm (picocom): New variable.
2016-09-28 12:40:12 +02:00
Lukas Gradl 615c999055
gnu: opendht: Propagate msgpack.
* gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack.
[propagated-inputs]: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:45:02 +02:00
Lukas Gradl 974aaf71e5
gnu: telephony: Add 'license:' prefix.
* gnu/packages/telephony.scm (commoncpp) [license]: Add prefix.
(ucommon) [license]: Add prefix.
(ccrtp) [license]: Add prefix.
(osip) [license]: Add prefix.
(exosip) [license]: Add prefix.
(sipwitch) [license]: Add prefix.
(libsrtp) [license]: Add prefix.
(libiax2) [license]: Add prefix.
(seren) [license]: Add prefix.
(pjproject-sfl) [license]: Add prefix.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:25:34 +02:00
Lukas Gradl 9a4c032cc4
gnu: Add gsm.
* gnu/packages/audio.scm (gsm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:14:42 +02:00
Lukas Gradl 89eb7581a4
gnu: Add dbus-c++.
* gnu/packages/glib.scm (dbus-c++): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:08:33 +02:00
Leo Famulari a7c9b062ad
gnu: libressl: Update to 2.5.0.
* gnu/packages/tls.scm (libressl): Update to 2.5.0.
2016-09-27 20:40:39 -04:00
Tobias Geerinckx-Rice ffabdc185c
gnu: encfs: Update to 1.9.1.
* gnu/packages/crypto.scm (encfs): Update to 1.9.1.
2016-09-28 00:20:30 +02:00
Tobias Geerinckx-Rice 9da3c49837
gnu: btrfs-progs: Update to 4.7.3.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3.
2016-09-28 00:20:30 +02:00
Tobias Geerinckx-Rice 8c120e4f3b
gnu: zip: Use 'modify-phases'.
* gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'.
2016-09-28 00:20:30 +02:00
Leo Famulari 8be2428e85
gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776].
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3.
2016-09-27 15:19:14 -04:00
Leo Famulari cc132e0f38
gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776].
* gnu/packages/dns.scm (bind): Update to 9.10.4-P3.
2016-09-27 15:19:14 -04:00
Stefan Reichoer e8c9b01090
gnu: Add python-q.
* gnu/packages/python.scm (python-q, python2-q): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 14:54:58 -04:00
Leo Famulari b9bc6e8420
gnu: expat: Fix regression caused by fix for CVE-2016-0718.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:49:49 -04:00
Thomas Danckaert 32f70e1f86
gnu: Add gctp.
* gnu/packages/maths.scm (gctp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:37:46 -04:00
ng0 3973e137f0
gnu: Add gloox.
* gnu/packages/messaging.scm (gloox): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:31:18 -04:00
ng0 419fb3f1ac
gnu: femtolisp: Don't build on mips64el or armhf.
* gnu/packages/lisp.scm (femtolisp)[supported-systems]: New field,
remove support for mips64el and armhf.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 12:29:35 -04:00
Andy Wingo e9070933bf
gnu: Add gobby.
* gnu/packages/gobby.scm (gobby): New variable.
2016-09-27 14:46:10 +02:00
Andy Wingo 22a3cff3c8
gnu: Add obby.
* gnu/packages/gobby.scm (obby): New variable.
2016-09-27 14:46:10 +02:00
Andy Wingo c8105e811b
gnu: Add libnet6.
* gnu/packages/gobby.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
2016-09-27 14:46:10 +02:00
Andy Wingo b61d962723
gnu: Add libxml++-2.
* gnu/packages/gnome.scm (libxml++-2): New variable.
2016-09-27 14:46:10 +02:00
Efraim Flashner a777535cd7
gnu: aria2: Update to 1.27.1.
* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
2016-09-27 14:52:48 +03:00
Ben J Woodcroft 99caa6f75f
gnu: python-plastid: Update to 1.4.6.
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
2016-09-27 20:07:12 +10:00