795a604526
gnu: r-grohmm: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.
2017-04-28 11:04:25 +02:00
026dc7e4fc
gnu: r-systempiper: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.
2017-04-28 11:04:24 +02:00
34c276f761
gnu: r-shortread: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.
2017-04-28 11:04:22 +02:00
9511773423
gnu: r-gostats: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.
2017-04-28 11:04:21 +02:00
ca0289aee7
gnu: r-category: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.
2017-04-28 11:04:20 +02:00
c584a07ffd
gnu: r-gseabase: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.
2017-04-28 11:04:19 +02:00
8ab6f241ea
gnu: r-rbgl: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0.
2017-04-28 11:04:16 +02:00
46972a4427
gnu: r-annotationforge: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.
2017-04-28 11:04:12 +02:00
3ae74e451c
gnu: r-deseq2: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.
2017-04-28 11:04:09 +02:00
b5bc3a3963
gnu: r-genefilter: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.
2017-04-28 11:04:06 +02:00
97a50e4f34
gnu: r-geneplotter: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.
2017-04-28 11:03:59 +02:00
dbab99b6d2
gnu: r-annotate: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.
2017-04-28 11:03:47 +02:00
7c3e4660a5
import: Update Bioconductor release to 3.5.
...
* guix/import/cran.scm: Change Bioconductor release to 3.5.
2017-04-28 11:02:26 +02:00
ffef27f3d2
gnu: Add r-genomeinfodbdata.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.
2017-04-28 10:17:06 +02:00
71e34e6b5b
gnu: Add r-delayedarray.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
2017-04-28 10:15:12 +02:00
2abfc5b827
gnu: Add r-bookdown.
...
* gnu/packages/bioinformatics.scm (r-bookdown): New variable.
2017-04-28 10:09:31 +02:00
833361a483
gnu: linux-libre: Update to 4.10.13.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.13.
(%linux-libre-hash): Update hash.
2017-04-28 00:42:46 -04:00
f28851be95
gnu: linux-libre@4.9: Update to 4.9.25.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.25.
2017-04-28 00:40:48 -04:00
01c58cb3e9
gnu: linux-libre@4.4: Update to 4.4.64.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.64.
2017-04-28 00:39:53 -04:00
244d4f4877
gnu: serf: Update to 1.3.9.
...
* gnu/packages/patches/serf-comment-style-fix.patch,
gnu/packages/patches/serf-deflate-buckets-test-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/web.scm (serf): Update to 1.3.9.
[source]: Remove patches.
2017-04-27 17:58:43 +02:00
decb4c26fa
gnu: serf: Disable expired SSL tests.
...
Fixes <https://bugs.gnu.org/26671 >.
* gnu/packages/web.scm (serf)[arguments]<#:phases>: Add 'disable-broken-tests'.
2017-04-27 17:58:43 +02:00
0d29f5aac5
gnu: kodi: Update to 18.0_alpha-3-749c61e.
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* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-3-749c61e.
2017-04-27 17:58:43 +02:00
6373cddf42
gnu: tor: Update to 0.3.0.6.
...
* gnu/packages/tor.scm (tor): Update to 0.3.0.6.
2017-04-27 13:00:45 +02:00
baca533370
gnu: simple-scan: Update to 3.24.1.
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* gnu/packages/gnome.scm (simple-scan): Update to 3.24.1.
2017-04-27 09:37:32 +02:00
d39a84e80c
gnu: Add mdbtools.
...
* gnu/packages/databases.scm (mdbtools): New variable.
2017-04-27 10:15:51 +05:30
2018eea07b
Merge branch 'staging'
2017-04-27 00:33:06 -04:00
be58ffa4aa
gnu: owncloud-client: Update to 2.3.1.
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* gnu/packages/sync.scm (owncloud-client): Update to 2.3.1.
[arguments]: Enable more tests.
2017-04-26 22:04:01 +03:00
c9ba67a5f2
gnu: synergy: Update to 1.8.8.
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* gnu/packages/synergy.scm (synergy): Update to 1.8.8.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-04-27 00:03:20 +05:30
b63106089a
gnu: Add Xfce Notification Daemon.
...
* gnu/packages/xfce.scm (xfce4-notifyd): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-26 16:32:24 +02:00
2766f9e84f
gnu: Add volk.
...
Fixes <http://bugs.gnu.org/26614 >.
* gnu/packages/engineering.scm (volk): New variable.
2017-04-26 15:59:09 +02:00
fadae857b7
gnu: nss-pam-ldapd: Add Kerberos support.
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* gnu/packages/openldap.scm (nss-pam-ldapd)[inputs]: Add mit-krb5.
2017-04-26 13:10:00 +02:00
289a89801a
gnu: nss-pam-ldapd: Look for nslcd.conf in global /etc/ directory.
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* gnu/packages/openldap.scm (nss-pam-ldapd)[arguments]: Set
"--with-ldap-conf-file" to look for global configuration file; add build phase
to install example configuration file in the package output directory.
2017-04-26 13:09:13 +02:00
efba832751
gnu: ethtool: Update to 4.10.
...
* gnu/packages/networking.scm (ethtool): Update to 4.10.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-26 11:42:16 +02:00
ce09f04ea0
gnu: ceph: Update to 12.0.2.
...
* gnu/packages/storage.scm (ceph): Update to 12.0.2.
[arguments]<#:phases>: Disable new test.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust.
2017-04-26 11:39:33 +02:00
011b858b94
gnu: vte-ng: Update to 0.48.2.a.
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* gnu/packages/gnome.scm (vte-ng): Update to 0.48.2.a.
[native-inputs]: Change GPERF-3.0 to GPERF.
2017-04-26 11:39:31 +02:00
b27aacbfe2
gnu: Add gcompris-qt.
...
* gnu/packages/education.scm (gcompris-qt): New variable.
2017-04-26 12:04:26 +03:00
4ad70ad8de
gnu: qtkeychain: Update to 0.8.0.
...
* gnu/packages/qt.scm (qtkeychain): Update to 0.8.0.
2017-04-26 09:42:13 +03:00
cd48a54902
gnu: fuse: Patch conflicting headers with the kernel.
...
* gnu/packages/linux.scm (fuse)[source]: Add patch.
* gnu/packages/patches/fuse-overlapping-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-04-26 08:45:24 +03:00
d26ae96c3d
gnu: Add guile-sjson.
...
* gnu/packages/guile.scm (guile-sjson): Add guile-sjson.
2017-04-25 22:44:52 -05:00
623fb4d162
gnu: Add freexl.
...
* gnu/packages/xml.scm (freexl): New variable.
2017-04-25 22:15:34 +02:00
b8ebbefee2
gnu: duplicity: Update to 0.7.12.
...
* gnu/packages/backup.scm (duplicity): Update to 0.7.12.
2017-04-25 21:04:04 +02:00
b5f57f60d5
Update name on email address for Mathieu Othacehe.
2017-04-26 00:11:17 +05:30
39d2d9a7ab
Merge branch 'master' into staging
2017-04-25 14:27:03 -04:00
c2bae4a219
gnu: cmst: Update to 2017.03.18.
...
* gnu/packages/connman.scm (cmst): Update to 2017.03.18.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-04-25 23:33:08 +05:30
31c374e081
gnu: python-pysam: Disable tests.
...
* gnu/packages/bioinformatics.scm (python-pysam): Disable tests.
2017-04-25 14:05:59 +02:00
43ba5dd4eb
gnu: mpv: Update to 0.25.0.
...
* gnu/packages/video.scm (mpv): Update to 0.25.0.
[arguments]: Add explicit configure-flags to enable cdda, dvdread and dvdnav.
2017-04-24 22:38:14 +03:00
a2a15f6b21
gnu: speedtest-cli: Update to 1.0.5.
...
* gnu/packages/networking.scm (speedtest-cli): Update to 1.0.5.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-04-24 21:25:14 +03:00
b2955e224e
gnu: python-pysam: Fix tests, again.
...
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nosetests
explicitly with a single process.
2017-04-24 18:46:28 +02:00
c136240efc
gnu: diamond: Enable building on all architectures.
...
* gnu/packages/bioinformatics.scm (diamond)[supported-systems]: Remove
field.
2017-04-24 19:30:10 +03:00
f0ef7b47d3
gnu: libevent: Disable regress tests.
...
* gnu/packages/libevent.scm (libevent)[arguments]: Disable the 'regress'
tests.
2017-04-24 19:30:02 +03:00
Roel Janssen