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34454 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice fa5511b6e9
gnu: r-car: Update to 3.0-1. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-1.
 2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 39bb1cc77a
gnu: r-digest: Update to 0.6.16. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.16.
 2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice ed61c44895
gnu: r-dplyr: Update to 0.7.6. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.6.
 2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 51dbad04c5
gnu: r-rcpp: Update to 0.12.18. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.18.
 2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 02489a6646
gnu: duplicity: Update to 0.7.18. 
* gnu/packages/backup.scm (duplicity): Update to 0.7.18.
 2018-08-23 17:16:39 +02:00
Arun Isaac 72816ebed2
gnu: darcs: Update to 2.14.1. 
* gnu/packages/version-control.scm (darcs): Update to 2.14.1.
[arguments]: Add patch-sh phase. Enable tests.
 2018-08-23 15:51:43 +05:30
Arun Isaac d3c7e70858
gnu: ghc-zlib: Update to 0.6.2. 
* gnu/packages/haskell.scm (ghc-zlib): Update to 0.6.2.
 2018-08-23 14:43:48 +05:30
Arun Isaac cdccdec1f2
gnu: ghc-quickcheck-instances: Update to 0.3.18. 
* gnu/packages/haskell-check.scm (ghc-quickcheck-instances): Update to 0.3.18.
[arguments]: Allow building with newer base-compat.
 2018-08-23 14:37:57 +05:30
Arun Isaac f797a0e987
gnu: ghc-graphviz: Update to 2999.20.0.2. 
* gnu/packages/haskell.scm (ghc-graphviz): Update to 2999.20.0.2.
[native-inputs]: Add ghc-hspec, graphviz and hspec-discover.
 2018-08-23 13:21:23 +05:30
Arun Isaac e173a95ffa
gnu: ghc-wl-pprint-text: Update to 1.2.0.0. 
* gnu/packages/haskell.scm (ghc-wl-pprint-text): Update to 1.2.0.0.
[inputs]: Add ghc-base-compat.
 2018-08-23 13:21:23 +05:30
Arun Isaac 0fa2c552fc
gnu: ghc-base-compat: Update to 0.10.4. 
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.10.4.
 2018-08-23 13:21:23 +05:30
Arun Isaac a3ab433a14
gnu: ghc-fgl-arbitrary: Allow building with newer hspec. 
* gnu/packages/haskell.scm (ghc-fgl-arbitrary)[arguments]: Allow building with
newer hspec.
 2018-08-23 13:00:53 +05:30
Arun Isaac c4348ca72c
gnu: ghc-shelly: Update to 1.8.1. 
* gnu/packages/haskell.scm (ghc-shelly): Update to 1.8.1.
[inputs]: Add ghc-hspec-contrib.
 2018-08-23 12:53:47 +05:30
Arun Isaac 66dbe158cf
gnu: ghc-sandi: Update to 0.4.2. 
* gnu/packages/haskell.scm (ghc-sandi): Update to 0.4.2.
 2018-08-23 12:44:00 +05:30
Arun Isaac b1a1600030
gnu: ghc-fgl: Update to 5.6.0.0. 
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.6.0.0.
[arguments]: Allow building with newer hspec.
 2018-08-23 12:32:46 +05:30
Mark H Weaver 4e51d3e9ae
gnu: guile-redis: Remove duplicate 'home-page' field. 
* gnu/packages/guile.scm (guile-redis): Remove duplicate 'home-page' field.
 2018-08-23 02:30:30 -04:00
Mark H Weaver efe2e7506e
gnu: guile-gcrypt: Remove duplicate 'home-page' field. 
This is a followup to commit b0cb92b2d4.

* gnu/packages/gnupg.scm (guile-gcrypt): Remove duplicate 'home-page' field.
 2018-08-23 02:29:31 -04:00
Mark H Weaver 12dc04d0b4
gnu: linux-libre: Update to 4.18.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.4.
(%linux-libre-hash): Update hash.
 2018-08-23 02:22:57 -04:00
Mark H Weaver 98dfe06e3e
gnu: linux-libre@4.14: Update to 4.14.66. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.66.
(%linux-libre-4.14-hash): Update hash.
 2018-08-23 02:21:28 -04:00
Mark H Weaver bb2efc0384
gnu: linux-libre@4.9: Update to 4.9.123. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.123.
 2018-08-23 02:20:44 -04:00
Mark H Weaver 435722f72c
gnu: linux-libre@4.4: Update to 4.4.151. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.151.
 2018-08-23 02:20:00 -04:00
Ludovic Courtès b0cb92b2d4
gnu: Add guile-gcrypt. 
* gnu/packages/gnupg.scm (guile-gcrypt): New variable.
 2018-08-23 00:44:55 +02:00
Leo Famulari 58927996d9
gnu: perl-dbd-mysql: Update to 4.046. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-22 15:40:08 -04:00
Paul Garlick 414f620fbb
gnu: python-pkgconfig: Enable tests. 
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:52 -04:00
Paul Garlick 5fab62527c
gnu: python-pkgconfig: Update to 1.3.1. 
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:49 -04:00
Leo Famulari 373a9fd4db
gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}. 
* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch,
gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (soundtouch)[source]: Use them.
 2018-08-22 13:38:39 -04:00
Leo Famulari eb88ccf711
gnu: soundtouch: Update to 2.0.0. 
* gnu/packages/audio.scm (soundtouch): Update to 2.0.0.
 2018-08-22 13:38:39 -04:00
Leo Famulari 180a8986e5
gnu: ImageMagick: Update to 6.9.10-10. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-10.
 2018-08-22 03:25:47 -04:00
Leo Famulari 09efe9af2d
gnu: GraphicsMagick: Update to 1.3.30. 
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.30.
 2018-08-22 03:25:46 -04:00
Tobias Geerinckx-Rice dc695341f7
gnu: r-fpc: Update to 2.1-11.1. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.1.
 2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice 7138c48e6e
gnu: r-survival: Update to 2.42-6. 
* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
 2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice 311f06c94a
gnu: Add sqlcrush. 
* gnu/packages/databases.smc (sqlcrush): New public variable.
 2018-08-22 00:03:43 +02:00
Tobias Geerinckx-Rice 9763102bd7
gnu: Add python-pymysql. 
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
 2018-08-22 00:03:43 +02:00
Raphaël Mélotte f998453559
gnu: luakit: Fix crash on startup. 
* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the
  wrapping phase.

This fixes a crash when no configuration file is present in the user's home
directory. It allows luakit to use it's own default configuration files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-08-21 23:27:09 +02:00
Ludovic Courtès c305ac30c3
gnu: guile-ssh: Don't build libguile-ssh.a. 
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
 2018-08-21 23:27:08 +02:00
Ludovic Courtès f7dfda2c73
gremlin: 'elf-dynamic-info-needed' test is no longer skipped. 
* tests/gremlin.scm (%guile-executable): Use /proc/self/exe instead
of (command-line).  For a while now, the first element of (command-line)
was "./build-aux/test-driver.scm"; consequently the test was always
skipped.
 2018-08-21 23:27:08 +02:00
Ludovic Courtès f43d2dcd80
linux-modules: Adjust 'section-contents' procedure. 
* gnu/build/linux-modules.scm (section-contents): Honor SECTION as was
intended.
(modinfo-section-contents): Pass 'section-contents' a section, not a
section name.
 2018-08-21 23:27:08 +02:00
Ludovic Courtès a81b59b1bf
inferior: Adjust for Guile 2.0. 
Partly fixes <https://bugs.gnu.org/32326>.
Reported by Michael Bowcutt <mbowcutt@riseup.net>.

* guix/inferior.scm (open-inferior): Wrap 'setvbuf' call in 'cond-expand'.
 2018-08-21 23:27:08 +02:00
Leo Famulari 6cd2c4a83c
gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473]. 
* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
 2018-08-21 11:16:30 -04:00
Leo Famulari 2fbc38e33b
gnu: python-paramiko: Add some missing dependencies. 
* gnu/packages/python-crypto.scm (python-paramiko,
python2-paramiko)[propagated-inputs]: Add python-bcrypt and python-pynacl.
 2018-08-21 11:04:47 -04:00
Pierre Neidhardt 15e57838c6
gnu: asymptote: Use minimal texlive-union. 
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Replace texlive with texlive-union.
 2018-08-21 16:32:22 +02:00
Pierre Neidhardt 756fc3e1ef
gnu: texlive-latex-base: Include support files. 
* gnu/packages/tex.scm (texlive-latex-base)[native-inputs]: Include support files.
 2018-08-21 16:32:22 +02:00
Pierre Neidhardt 9b02a79bb0
gnu: mit-scheme: Use minimal texlive-union. 
* gnu/packages/scheme.scm (mit-scheme)[native-inputs]: Replace texlive with texlive-union.
 2018-08-21 16:30:22 +02:00
Pierre Neidhardt dece8c91a9
build-system/asdf: Fix typo in "dependency". 
* guix/build-system/asdf.scm (default-lisp): Fix typo in "dependency".
 2018-08-21 16:27:03 +02:00
Tobias Geerinckx-Rice 49dcfb5045
gnu: sl: Don't use unstable tarball. 
* gnu/packages/toys.scm (sl)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice 20b5b97381
gnu: python-rpy2: Update to 2.9.4. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice db09a450d2
gnu: python-rpy2: Update home page. 
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice 93f9e0d9e9
gnu: r-iterators: Update to 1.0.10. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice 4370881631
gnu: r-foreign: Update to 0.8-71. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
 2018-08-21 07:17:05 +02:00
Chris Marusich 6fb6ac6857
gnu: services: Fix pcscd activation bug. 
Fixes: <https://bugs.gnu.org/32478>.

* gnu/services/security-token.scm (pcscd-activation): Idempotently create the
/var/lib/pcsc symlink so that it does not fail when it already exists.
 2018-08-20 21:43:56 -07:00