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18498 Commits

Author SHA1 Message Date
Ricardo Wurmus 47055b273a
gnu: r-edger: Add r-statmod to inputs. 
* gnu/packages/bioinformatics.scm (r-edger)[propagated-inputs]: Add r-statmod.
 2017-02-01 22:12:01 +01:00
Arun Isaac 5430dbd95b
gnu: Add freeciv. 
* gnu/packages/games.scm (freeciv): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-01 14:45:06 -05:00
Tobias Geerinckx-Rice 36df995c94
gnu: Add zpaq. 
* gnu/packages/compression.scm (zpaq): New variable.
 2017-02-01 16:13:57 +01:00
Tobias Geerinckx-Rice 814b099a20
download: Add ‘url-fetch/zipbomb’. 
From this suggestion by Ludovic Courtès:
<http://lists.gnu.org/archive/html/guix-devel/2016-09/msg01983.html>

* guix/download.scm (url-fetch/zipbomb): New procedure.
 2017-02-01 15:53:33 +01:00
Tobias Geerinckx-Rice 58f91e4d03
download: url-fetch/tarball: Make ‘name’ truly optional. 
* guix/download.scm (url-fetch/tarbomb): Fall back to ‘file-name’ if
‘name’ is #f, like the regular ‘url-fetch’ does.
* gnu/packages/bioinformatics.scm (muscle)[source]: Remove ‘file-name’.
* gnu/packages/engineering.scm (fastcap)[source]: Likewise.
* gnu/packages/scheme.scm (scmutils)[source]: Likewise.
 2017-02-01 15:53:32 +01:00
Tobias Geerinckx-Rice 61ac754453
gnu: Add nyx. 
* gnu/packages/tor.scm (nyx): New variable.
 2017-02-01 15:53:32 +01:00
Tobias Geerinckx-Rice 71794d7b94
gnu: tor: Use ‘license:’ prefix instead of #:select. 
* gnu/packages/tor.scm (tor, torsocks, privoxy, onionshare)[license]:
Add prefix.
 2017-02-01 15:53:32 +01:00
Tobias Geerinckx-Rice cf1bed97ca
gnu: youtube-dl: Update to 2017.01.29. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.01.29.
 2017-02-01 15:53:31 +01:00
Tobias Geerinckx-Rice 0bb1c35ac1
gnu: python-stem: Update to 1.5.4. 
* gnu/packages/python.scm (python-stem): Update to 1.5.4.
 2017-02-01 15:53:31 +01:00
Marius Bakke 3e32eeb247
gnu: gstreamer: Update to 1.10.3. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.3.
(gst-plugins-base): Likewise.
(gst-plugins-good): Likewise.
(gst-plugins-bad): Likewise.
(gst-plugins-ugly): Likewise.
(gst-libav): Likewise.
(python-gst): Likewise.
 2017-02-01 15:16:07 +01:00
Marius Bakke b2a6310ad9
gnu: xf86-video-intel: Update to 2.99.917-2-9fe04af. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-2-9fe04af.
 2017-02-01 15:05:50 +01:00
Marius Bakke ac6fec05e4
gnu: fio: Enable optional helper scripts. 
* gnu/packages/benchmark.scm (fio)[arguments]: Add 'patch-paths' and
'wrap-python-scripts' phases.
[inputs]: Add GNUPLOT, PYTHON-2, PYTHON2-NUMPY and PYTHON2-PANDAS.
 2017-02-01 14:13:55 +01:00
Marius Bakke 5fa1683617
gnu: fio: Update to 2.17. 
* gnu/packages/benchmark.scm (fio): Update to 2.17.
 2017-02-01 13:52:27 +01:00
Marius Bakke d736eec2ad
gnu: lftp: Update to 4.7.5. 
* gnu/packages/ftp.scm (lftp): Update to 4.7.5.
[source]: Rearrange mirrors.
 2017-02-01 13:52:27 +01:00
Marius Bakke 69ec039105
gnu: mumble: Update to 1.2.19. 
* gnu/packages/telephony.scm (mumble): Update to 1.2.19.
 2017-02-01 13:52:27 +01:00
Marius Bakke 75ba11afc2
gnu: xapian: Update to 1.4.3. 
* gnu/packages/search.scm (xapian): Update to 1.4.3.
 2017-02-01 13:52:27 +01:00
Danny Milosavljevic 4ae2a54df6
gnu: dtc: Update description to reference HOWTO. 
* gnu/packages/u-boot.scm (dtc)[description]: Modify.
 2017-02-01 13:49:55 +01:00
Ludovic Courtès 357db1f91d
system: More 'file-append' instead of #~(string-append #$thing …). 
* gnu/system/shadow.scm (<user-account>)[shell]: Use 'file-append'.
(%base-user-accounts): Likewise.
* gnu/system/grub.scm (%background-image): Likewise.
 2017-02-01 12:36:41 +01:00
Ludovic Courtès ae763b5b0b
system: Create home directories once 'file-systems' is up. 
Fixes <http://bugs.gnu.org/21108>.
Reported by Andy Patterson <ajpatter@uwaterloo.ca>
and Leo Famulari <leo@famulari.name>.

* gnu/build/activation.scm (activate-users+groups)[activate-user]: Pass
  #:create-home? #t iff CREATE-HOME? and SYSTEM?.
(activate-user-home): New procedure.
* gnu/system/shadow.scm (account-shepherd-service): New procedure.
(account-service-type)[extensions]: Add SHEPHERD-ROOT-SERVICE-TYPE
extension.
* gnu/tests/base.scm (run-basic-test)["home"]
["skeletons in home directories"]: New tests.
* gnu/tests/install.scm (%separate-home-os, %separate-home-os-source)
(%test-separate-home-os): New variables.
 2017-02-01 12:36:41 +01:00
Leo Famulari 524ee6c9e5
gnu: nginx: Update to 1.11.9. 
* gnu/packages/web.scm (nginx): Update to 1.11.9.
 2017-02-01 01:42:39 -05:00
Eric Bavier 25925725f4
gnu: mg: Upgrade to 20161005. 
* gnu/packages/mg.scm (mg)[source]: Upgrade to 20161005.
[native-inputs]: Add pkg-config.
[inputs]: Add libbsd.
[arguments]: Use modify-phases.  Use #:make-flags rather than patching the
Makefile.  Install tutorial.
[description]:  Clarify relation to GNU Emacs.
 2017-01-31 21:16:08 -06:00
Eric Bavier f255a6db17
gnu: Add JOE. 
* gnu/packages/text-editors.scm (joe): New variable.
 2017-01-31 20:26:20 -06:00
Marius Bakke e8fc1a0dcf
gnu: libevent: Update to 2.1.8 [security fixes]. 
* gnu/packages/libevent.scm (libevent): Update to 2.1.8.
[inputs]: Change 'python-wrapper' to 'python-2'. Move 'which' to ...
[native-inputs]: ... here. New field.
(libevent-2.0): New variable.
* gnu/packages/patches/libevent-2.1-dns-tests.patch,
  gnu/packages/patches/libevent-2.0-evdns-fix-remote-stack-overread.patch
  gnu/packages/patches/libevent-2.0-evdns-fix-searching-empty-hostnames.patch
  gnu/packages/patches/libevent-2.0-evutil-fix-buffer-overflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Change 'libevent' to 'libevent-2.0'.
 2017-02-01 02:42:12 +01:00
Ludovic Courtès f1a892c96f
lint: Use the "@" syntax for versioned packages in warnings. 
* guix/scripts/lint.scm (emit-warning): Use the "@" syntax.
 2017-01-31 23:51:09 +01:00
Ludovic Courtès fae88ae884
gnu: mdadm: Update to 4.0. 
* gnu/packages/linux.scm (mdadm): Update to 4.0.
[arguments]: Add "CC=gcc" to #:make-flags.
 2017-01-31 23:48:59 +01:00
Ludovic Courtès 4fc6985c1c
gnu: parallel: Update to 20170122. 
* gnu/packages/parallel.scm (parallel): Update to 20170122.
 2017-01-31 23:46:34 +01:00
Ludovic Courtès 8555a609df
gnu: kbd: Update to 2.0.4. 
* gnu/packages/linux.scm (kbd): Update to 2.0.4.
 2017-01-31 23:45:56 +01:00
Ludovic Courtès c886608e6b
gnu: gdb: Update to 7.12.1. 
* gnu/packages/gdb.scm (gdb): Update to 7.12.1.
 2017-01-31 23:44:57 +01:00
Ludovic Courtès 5f8edd7f37
gnu: xcalc: Update to 1.0.6. 
* gnu/packages/xorg.scm (xcalc): Update to 1.0.6.
 2017-01-31 23:21:59 +01:00
Ludovic Courtès a43aca973e
system: Introduce 'file-systems' Shepherd service. 
* gnu/services/base.scm (file-system-shepherd-services): New procedure.
(file-system-service-type): Use it as the SHEPHERD-ROOT-SERVICE-TYPE
extension.
(user-processes-service-type): Change to take a single 'grace-delay'
parameter.
(user-processes-service): Remove 'file-systems' parameter.  Pass
GRACE-DELAY as the only value for the service.
* gnu/system.scm (essential-services): Adjust accordingly.
 2017-01-31 23:21:59 +01:00
Ludovic Courtès 2fe4ceee18
file-systems: Do not read superblocks past the end of a device. 
Fixes <http://bugs.gnu.org/25573>.
Reported by Alex Kost <alezost@gmail.com>.

* gnu/build/file-systems.scm (seek*): New procedure.
(read-superblock): Use it instead of 'seek' and ensure it returns
OFFSET.
 2017-01-31 23:21:59 +01:00
Raoul Jean Pierre Bonnal 69f2b3bdf9
gnu: Add r-rhdf5. 2017-01-31 22:35:11 +01:00
Raoul Jean Pierre Bonnal d4af25b51b
gnu: Add r-tximport. 2017-01-31 22:35:08 +01:00
Julien Lepiller f5c8cf3be7
gnu: Add ocaml-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-bin-prot): New variable.
 2017-01-31 21:35:51 +01:00
Julien Lepiller f95ebba516
gnu: Add ocaml-js-build-tools. 
* gnu/packages/ocaml.scm (ocaml-js-build-tools): New variable.
 2017-01-31 21:35:45 +01:00
Julien Lepiller 5eed45a8d7
gnu: Add ocaml-oasis. 
* gnu/packages/ocaml.scm (ocaml-oasis): New variable.
 2017-01-31 21:35:42 +01:00
Julien Lepiller 77a515e9b5
gnu: Add ocaml-fileutils. 
* gnu/packages/ocaml.scm (ocaml-fileutils): New variable.
 2017-01-31 21:35:38 +01:00
Julien Lepiller 3763eea716
gnu: Add ocaml-expect. 
* gnu/packages/ocaml.scm (ocaml-expect): New variable.
 2017-01-31 21:35:35 +01:00
Julien Lepiller f8a12de1cb
gnu: Add ocaml-pcre. 
* gnu/packages/ocaml.scm (ocaml-pcre): New variable.
 2017-01-31 21:35:32 +01:00
Julien Lepiller 0e9e94b7ff
gnu: Add ocaml-batteries. 
* gnu/packages/ocaml.scm (ocaml-batteries): New variable.
 2017-01-31 21:35:30 +01:00
Julien Lepiller 41e8e07919
gnu: Add omake. 
* gnu/packages/ocaml.scm (omake): New variable.
* gnu/packages/patches/omake-fix-non-determinism.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
 2017-01-31 21:35:27 +01:00
Julien Lepiller c590f1ae8a
gnu: Add ocamlify. 
* gnu/packages/ocaml.scm (ocamlify): New variable.
 2017-01-31 21:35:23 +01:00
Julien Lepiller 5d08f98d3e
gnu: Add ocaml-base64. 
* gnu/packages/ocaml.scm (ocaml-base64): New variable.
 2017-01-31 21:34:53 +01:00
Thomas Danckaert 59ae241f71
gnu: Add xinetd. 
* gnu/packages/web.scm (xinetd): New variable.
* gnu/packages/patches/xinetd-CVE-2013-4342.patch,
gnu/packages/patches/xinetd-fix-fd-leak.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-31 15:06:19 -05:00
Ricardo Wurmus 9b11eee955
gnu: Add neovim. 
* gnu/packages/vim.scm (neovim): New variable.
 2017-01-31 21:01:53 +01:00
Ricardo Wurmus d9ed1779b8
gnu: Add lua5.2-lpeg. 
* gnu/packages/lua.scm (lua5.2-lpeg): New variable.
 2017-01-31 20:39:39 +01:00
Ricardo Wurmus cf9a788d93
gnu: Add lua5.2-bitop. 
* gnu/packages/lua.scm (lua5.2-bitop): New variable.
 2017-01-31 20:36:30 +01:00
Ricardo Wurmus 369ee96b69
gnu: Add lua5.2-libmpack. 
* gnu/packages/serialization.scm (lua5.2-libmpack): New variable.
 2017-01-31 20:36:09 +01:00
Ricardo Wurmus 8e664e7e55
gnu: Add lua-libmpack. 
* gnu/packages/serialization.scm (lua-libmpack): New variable.
 2017-01-31 20:35:54 +01:00
Ricardo Wurmus c57e5fd0c0
gnu: Add libmpack. 
* gnu/packages/serialization.scm (libmpack): New variable.
 2017-01-31 20:34:01 +01:00