5131e21064
gnu: r-rtracklayer: Update to 1.32.2.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
2016-07-28 21:45:14 +10:00
2a3e325f5e
gnu: r-genomeinfodb: Update to 1.8.3.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
2016-07-28 21:45:14 +10:00
f2e791750b
gnu: r-s4vectors: Update to 0.10.2.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
2016-07-28 20:13:42 +10:00
e335b82c4e
gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}].
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* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
2016-07-28 02:08:49 -04:00
46e4e84ffc
gnu: the-silver-searcher: Update to 0.32.0.
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* gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0.
2016-07-28 08:05:04 +02:00
8e5d8b1880
gnu: imagemagick: Update to 6.9.5-3.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3.
2016-07-27 23:25:13 -04:00
ff7172feae
gnu: mariadb: Update to 10.1.16.
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* gnu/packages/databases.scm (mariadb): Update to 10.1.16.
2016-07-27 23:25:08 -04:00
b111bdb667
gnu: calibre: Update to 2.63.0.
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* gnu/packages/ebook.scm (calibre): Update to 2.63.0.
[inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.
* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.
Signed-off-by: Roel Janssen <roel@gnu.org>
2016-07-27 23:45:16 +02:00
cad7e6abaf
system: Source /etc/environment before $HOME/.guix-profile/etc/profile.
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* gnu/system.scm (operating-system-etc-service) <profile>: Move sourcing
of /etc/environment before that of $HOME/.guix-profile/etc/profile.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-27 23:08:20 +02:00
9712ef8d42
gnu: krona-tools: Update to 2.7.
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* gnu/packages/web.scm (krona-tools): Update to 2.7.
[arguments]: Delete 'build' phase. Install new scripts.
2016-07-27 23:39:56 +10:00
12c8f210ee
gnu: diamond: Update to 0.8.16.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
2016-07-27 23:17:57 +10:00
fd6830b3a6
gnu: guix: Update revision number in version.
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This is a follow-up to commit 95af24a2f1
2016-07-27 15:16:17 +02:00
46bd451520
gnu: magit: Fix rebase commands that require perl.
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* gnu/packages/emacs.scm (magit)[inputs]: Add 'perl'.
[arguments]: Adjust 'patch-exec-paths' phase to make some rebase
commands find 'perl'.
Signed-off-by: Alex Kost <alezost@gmail.com>
2016-07-27 11:15:45 +03:00
82ee141bab
gnu: Add httping.
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* gnu/packages/networking.scm (httping): New variable.
2016-07-27 03:59:47 +02:00
42ff54d5fa
gnu: Add missing copyright symbol.
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* gnu/packages/networking.scm: Add missing "©" to header comments.
2016-07-27 03:59:47 +02:00
ae83dcf6ba
gnu: gmime: Remove 'gpg' to 'gpg2' substitution.
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* gnu/packages/mail.scm (gmime)[arguments]: Remove the substitution which
previously changed 'gpg' to 'gpg2' in 'patch-paths-in-tests' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-26 19:43:54 -04:00
d3896fc4ce
gnu: dmd: Remove package, superseded by shepherd.
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* gnu/packages/admin.scm (dmd): Remove variable.
2016-07-26 22:50:26 +02:00
90c2ee889b
gnu: Add perl-db-file.
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* gnu/packages/databases.scm (perl-db_file): New variable.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-07-26 22:43:48 +02:00
88a8ce87a4
gnu: icecat: Install icons.
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* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add
'install-icons' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-26 14:53:16 +02:00
2b76f13507
gnu: Add haveged.
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* gnu/packages/linux.scm (haveged): New variable.
2016-07-26 11:20:52 +02:00
af7aaaebab
gnu: Add perceptualdiff.
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* gnu/packages/image.scm (perceptualdiff): New variable.
2016-07-26 11:20:27 +02:00
ca80985c6c
gnu: linux-libre@4.1: Update to 4.1.28.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.28.
2016-07-26 01:36:12 -04:00
de348a0bb7
gnu: linux-libre: Update to 4.7.
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* gnu/packages/linux.scm (linux-libre): Update to 4.7.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: New files.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.
2016-07-26 00:46:40 -04:00
0e5f606159
gnu: calibre: Build with non-modular Qt.
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* gnu/packages/ebook.scm (calibre)[native-inputs]: Replace QTBASE by QT.
[inputs]: Replace QTBASE by QT and PYTHON2-PYQT by PYTHON2-PYQT-5.5.
This essentially reverts commit 76806c54ed
2016-07-26 00:38:39 +02:00
4a8c35e143
gnu: pyqt: Add versions based on non-modular Qt 5.5.
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* gnu/packages/qt.scm (python-pyqt-5.5, python2-pyqt-5.5): New variables.
2016-07-26 00:38:20 +02:00
95af24a2f1
gnu: guix: Update development snapshot.
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* gnu/packages/package-management.scm (guix-devel): Update to 97c8aef
2016-07-25 22:53:27 +02:00
97c8aef15d
system: Add mapped devices for RAID.
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* gnu/system/mapped-devices.scm (raid-device-mapping, open-raid-device,
close-raid-device): New variables.
* doc/guix.texi (Mapped Devices): Add documentation for RAID devices,
reorganize documentation for LUKS devices.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-07-25 22:22:21 +02:00
090bdb9e91
gnu: emacs-solarized-theme: Remove unneeded dependencies.
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* gnu/packages/emacs.scm (emacs-solarized-theme)[propagated-inputs]:
Remove 'emacs-f' and 'emacs-s'.
2016-07-25 17:18:53 +03:00
c48899eba2
gnu: emacs: Install site-start.el in non-versioned directory.
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Reported by Ricardo Wurmus on #guix.
* gnu/packages/emacs.scm (emacs)[arguments]: Put "site-start.el" in
"/share/emacs/site-lisp" instead of "/share/emacs/<version>/site-lisp"
to let inherited package with another version find it.
2016-07-25 17:18:53 +03:00
07f7cc03ce
gnu: Add guile-daemon.
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* gnu/packages/guile.scm (guile-daemon): New variable.
2016-07-25 17:18:53 +03:00
bd9af61035
gnu: Add guile-xosd.
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* gnu/packages/guile.scm (guile-xosd): New variable.
2016-07-25 17:18:53 +03:00
6cfd1a687a
gnu: Add xdpyprobe.
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* gnu/packages/xdisorg.scm (xdpyprobe): New variable.
2016-07-25 17:18:53 +03:00
84b5d9075c
gnu: mkfontdir: Do not propagate 'mkfontscale'.
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* gnu/packages/xorg.scm (mkfontdir)[propagated-inputs]: Move
'mkfontscale' to ...
[inputs]: ... here.
[arguments]: Add 'wrap-mkfontdir' phase.
2016-07-25 17:18:52 +03:00
e48e31bcc8
gnu: Add xfd.
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* gnu/packages/xorg.scm (xfd): New variable.
2016-07-25 17:18:52 +03:00
f225ae7544
gnu: Add xfontsel.
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* gnu/packages/xorg.scm (xfontsel): New variable.
2016-07-25 17:18:52 +03:00
1925a87926
gnu: sbcl: Update to 1.3.7.
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* gnu/packages/lisp.scm (sbcl): Update to 1.3.7.
[arguments]: During the patch-unix-tool-paths phase, avoid running
substitute* on a utf-16-be encoded file.
Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-07-25 19:50:13 +08:00
54a43ff406
gnu: ecl: Wrap with PATH, CPATH, LIBRARY_PATH, and LD_LIBRARY_PATH.
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* gnu/packages/lisp.scm (ecl)[arguments]: Add 'wrap' phase.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-07-25 10:48:49 +02:00
60474cd114
gnu: ecl: Enable tests.
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* gnu/packages/lisp.scm (ecl): Enable tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-25 10:48:49 +02:00
e0524511ec
gnu: ecl: Update to 16.1.2.
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* gnu/packages/lisp.scm (ecl): Update to 16.1.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-25 10:48:49 +02:00
45477c6a7d
gnu: gnupg@2.1: Use 'modify-phases'.
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* gnu/packages/gnupg.scm (gnupg@2.1)[arguments]: Use 'modify-phases'
syntax.
2016-07-25 00:18:15 +03:00
35d28c6013
gnu: hdup: Update source url.
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* gnu/packages/backup.scm (hdup)[source]: Update url.
2016-07-25 00:15:30 +03:00
163708a664
gnu: gnupg-2.1: Install executable as 'gpg'.
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* gnu/packages/gnupg.scm (gnupg-2.1)[arguments]: Add '--enable-gpg2-is-gpg'
to #:configure-flags.
2016-07-24 17:09:40 -04:00
bc85b127df
gnu: gnupg@2.0: Add the 'gpg' and 'gpgv' commands.
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* gnu/packages/gnupg.scm (gnupg-2.0)[arguments]: Add
'rename-v2-commands' phase.
2016-07-24 22:18:45 +02:00
80c47cf8e4
gnu: gnupg@2.0: Fix typo.
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* gnu/packages/gnupg.scm (gnupg@2.0)[arguments]: Fix typo that prevented
gnupg from building.
This is a follow up to 6b547d2295
2016-07-24 22:02:46 +03:00
04c828c4fb
gnu: exiv2: Update source url.
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* gnu/packages/geeqie.scm (exiv2)[source]: Update url.
2016-07-24 21:17:04 +03:00
6b547d2295
doc: gnupg@2.0: Use 'modify-phases'.
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* gnu/packages/gnupg.scm (gnupg-2.0)[arguments]: Use 'modify-phases'.
2016-07-24 19:54:15 +02:00
a308c2339a
gnu: icecat: Disable parallel build.
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* gnu/packages/gnuzilla.scm (icecat)[arguments]: Disable parallel build.
2016-07-24 18:40:46 +02:00
238e5642d4
gnu: icecat: Update to 38.8.0-gnu2.
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* gnu/packages/gnuzilla.scm (icecat): Update to 38.8.0-gnu2.
2016-07-24 17:28:36 +02:00
d841a292b2
gnu: openssh: Fix CVE-2016-6210.
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* gnu/packages/ssh.scm (openssh)[source]: Add patches
openssh-CVE-2016-6210-1.patch, openssh-CVE-2016-6210-2.patch,
openssh-CVE-2016-6210-3.patch.
* gnu/packages/patches/openssh-CVE-2016-6210-1.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-2.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register them.
2016-07-24 16:18:41 +03:00
df2c7563ff
gnu: pspp: Update to 0.10.2.
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* gnu/packages/statistics.scm (pspp): Update to 0.10.2.
2016-07-24 15:43:35 +03:00
Ben Woodcroft