5021f54787
gnu: ncbi-vdb: Update to 2.8.2.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
2017-03-16 10:19:25 +01:00
6c4ccf3228
gnu: ngs-sdk: Update to 1.3.0.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
2017-03-16 10:18:48 +01:00
0f03c53168
gnu: Add pzstd.
...
* gnu/packages/compression.scm (pzstd): New variable.
2017-03-16 05:44:02 +01:00
f6ac3101ff
gnu: Add zstd.
...
* gnu/packages/compression.scm (zstd): New variable.
2017-03-16 05:44:02 +01:00
9186216268
gnu: python-publicsuffix2: Update to 2.20160818.
...
* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
2017-03-16 05:44:02 +01:00
192b887a03
gnu: awscli: Update to 1.11.63.
...
* gnu/packages/python.scm (awscli): Update to 1.11.63.
2017-03-16 05:44:01 +01:00
d93985fe22
gnu: python-botocore: Update to 1.5.26.
...
* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
2017-03-16 05:44:01 +01:00
70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1.
...
* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
2017-03-16 05:44:01 +01:00
26a657f06a
gnu: Add prboom-plus.
...
* gnu/packages/games.scm (prboom-plus): New variable.
2017-03-15 23:14:42 -04:00
5b5cf3c765
gnu: Add tftp-hpa.
...
* gnu/packages/networking.scm (tftp-hpa): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 18:24:30 -04:00
80a725726d
gnu: guile-next: Update to 2.2.0.
...
* gnu/packages/guile.scm (guile-next): Update to 2.2.0.
2017-03-15 22:59:40 +01:00
dce8ac54b4
gnu: profanity: Make the source URL version-agnostic.
...
* gnu/packages/messaging.scm (profanity)[source]: Use (version) in the source
URL.
2017-03-15 17:20:27 -04:00
cf8d068775
gnu: units: Update to 2.14.
...
* gnu/packages/maths.scm (units): Update to 2.14.
2017-03-15 22:19:40 +01:00
3d602acb13
gnu: no-more-secrets: Update to 0.3.2.
...
* gnu/packages/games.scm (no-more-secrets): Update to 0.3.2.
2017-03-15 22:19:40 +01:00
7ea523853c
gnu: mailutils: Update to 3.2.
...
* gnu/packages/mail.scm (mailutils): Update to 3.2.
2017-03-15 22:19:40 +01:00
f38607536e
gnu: Use INSTALL-FILE where appropriate.
...
* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler
INSTALL-FILE for COPY-FILE when invoked with redundant arguments.
* gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity,
edirect, fasttree, rsem, samtools-0.1): Likewise.
* gnu/packages/code.scm (withershins): Likewise.
* gnu/packages/conky.scm (conky): Likewise.
* gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise.
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise.
* gnu/packages/engineering.scm (librecad): Likewise.
2017-03-15 22:19:39 +01:00
618e4bfbad
gnu: cryptsetup: Update to 1.7.4.
...
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.4.
2017-03-15 22:19:39 +01:00
4e128dd582
gnu: man-pages: Update to 4.10.
...
* gnu/packages/man.scm (man-pages): Update to 4.10.
[home-page]: Use HTTPS.
2017-03-15 22:19:38 +01:00
a829c6501b
gnu: Add profanity.
...
* gnu/packages/messaging.scm (profanity): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
781d3b070c
gnu: Add libstrophe.
...
* gnu/packages/messaging.scm (libstrophe): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
13292ee570
gnu: Add libmesode.
...
* gnu/packages/messaging.scm (libmesode): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
9e61d1534a
gnu: bitcoin-core: Update to 0.14.0.
...
* gnu/packages/finance.scm (bitcoin-core): Update to 0.14.0.
2017-03-15 15:48:43 -04:00
bd102157a1
gnu: mariadb: Update to 10.1.22 [fixes CVE-2017-3302 and CVE-2017-3313].
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.22.
2017-03-15 15:08:31 +01:00
27bf00e691
gnu: python-waf: Update to 1.9.8.
...
* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
2017-03-15 13:08:56 +02:00
283234a309
gnu: direnv: Update to 2.11.3.
...
* gnu/packages/shellutils.scm (direnv): Update to 2.11.3.
2017-03-15 03:45:57 +01:00
68c10f31f9
gnu: conky: Update to 1.10.6.
...
* gnu/packages/conky.scm (conky): Update to 1.10.6.
2017-03-15 03:45:56 +01:00
708e76287c
gnu: obs: Update to 18.0.1.
...
* gnu/packages/video.scm (obs): Update to 18.0.1.
2017-03-15 03:45:56 +01:00
17753e6edb
gnu: youtube-dl: Update to 2017.03.15.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.15.
2017-03-15 03:45:55 +01:00
a988cbb766
gnu: stress-make: Fix description.
...
* gnu/packages/debug.scm (stress-make)[description]: Fix typo.
Avoid ambiguous use of ‘in order’.
2017-03-15 03:45:55 +01:00
d540156c69
gnu: znc: Update to 1.6.5.
...
* gnu/packages/messaging.scm (znc): Update to 1.6.5.
2017-03-15 03:43:21 +01:00
6d57723ac8
gnu: grue-hunter: Correctly install documentation.
...
* gnu/packages/games.scm (grue-hunter)[arguments]: Install and populate
‘/share/doc/grue-hunter’ as a directory, not a plain file.
2017-03-15 01:10:31 +01:00
b2d748edff
gnu: samtools: End installation phases with truth.
...
* gnu/packages/bioinformatics.scm (samtools, samtools-0.1)[arguments]:
Return #T instead of the undefined results of COPY-FILE or INSTALL-FILE.
2017-03-15 01:10:30 +01:00
35dcfed370
gnu: w3m: Update to 0.5.3+git20170102 [security fixes].
...
See 'NEWS' and 'ChangeLog' in the source distribution for more
information about the security-related bug fixes.
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20170102.
2017-03-14 18:26:28 -04:00
2eab5db300
Revert "gnu: gitolite: Fix shebangs in hooks."
...
This change embedded store references in the shebangs of scripts that
were meant to be copied out of the store. Those scripts would break when
the interpreters expected by the shebangs were garbage collected.
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25966#28 >
This reverts commit d0c16adb19
2017-03-14 18:26:28 -04:00
796d2f2d0b
Revert "gnu: nss: Use 'modify-phases' syntax."
...
This reverts commit 87f1c7efc1
2017-03-14 22:29:18 +01:00
031349075a
Revert "gnu: nss, nss-certs: Update to 3.29.3."
...
Hydra failed to build this version. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2017-03/msg00408.html .
This reverts commit 4f3dcdd99b
2017-03-14 22:26:18 +01:00
edda7ebec1
gnu: Add ocaml-ppx-typerep-conv.
...
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
2017-03-14 22:09:56 +01:00
d2203187fe
gnu: Add ocaml-ppx-let.
...
* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
2017-03-14 22:09:50 +01:00
250ac438e7
gnu: Add ocaml-ppx-enumerate.
...
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
2017-03-14 22:09:48 +01:00
a43160ee6f
gnu: Add ocaml-ppx-assert.
...
* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable.
2017-03-14 22:09:46 +01:00
651563bd71
gnu: Add ocaml-ppx-here.
...
* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
2017-03-14 22:09:44 +01:00
14af90cfbd
gnu: Add ocaml-ppx-variants-conv.
...
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable.
2017-03-14 22:09:41 +01:00
334436f051
gnu: Add ocaml-ppx-sexp-conv.
...
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-conv): New variable.
2017-03-14 22:09:39 +01:00
d1d90df63b
gnu: Add ocaml-variantslib.
...
* gnu/packages/ocaml.scm (ocaml-variantslib): New variable.
2017-03-14 22:09:37 +01:00
ef0051b2c5
gnu: Add ocaml-typerep.
...
* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
2017-03-14 22:09:33 +01:00
d19c1b4105
gnu: Add ocaml-sexplib.
...
* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.
2017-03-14 22:09:14 +01:00
9099a45792
gnu: asciidoc: Add XML and XSLT support.
...
* gnu/packages/documentation.scm (asciidoc)[arguments]: Add
set-xml-binary-paths phase.
[inputs]: Add libxml2 and libxslt.
2017-03-14 15:57:54 -04:00
9b05ccfedd
gnu: linux-libre@4.1: Update to 4.1.39.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.39.
2017-03-14 12:55:20 -04:00
962cbb24c5
gnu: windowmaker: Use modify-phases syntax.
...
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Use modify-phases.
2017-03-14 12:10:16 -04:00
8cac5bca12
gnu: windowmaker: Update to 0.95.8.
...
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.8.
2017-03-14 12:10:12 -04:00
d779305db0
gnu: aria2: Update to 1.31.0.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.31.0.
2017-03-14 15:05:27 +02:00
28958b646f
gnu: python-parsedatetime: Update to 2.3.
...
Version 2.1 was apparently time-sensitive and started failing like this:
======================================================================
FAIL: testFloat (tests.TestDelta.test)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 64, in testFloat
self.cal.parse('1.4 months ago', self.source), months=-1.4)
File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 37, in assertDelta
self.assertTrue(diff < 0.05, '%s is not less than 0.05' % diff)
AssertionError: 0.0666666666667 is not less than 0.05
----------------------------------------------------------------------
* gnu/packages/python.scm (python-parsedatetime): Update to 2.3.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
[propagated-inputs]: New field.
2017-03-14 11:18:16 +01:00
a4651f6411
gnu: Add dovecot-libsodium-plugin.
...
* gnu/packages/mail.scm (dovecot-libsodium-plugin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-14 10:28:57 +01:00
944a5cdd0d
gnu: Add dovecot-trees.
...
* gnu/packages/mail.scm (dovecot-trees): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-14 10:28:57 +01:00
a70782d37b
gnu: wireless-regdb: Update to 2017.03.07.
...
* gnu/packages/linux.scm (wireless-regdb): Update to 2017.03.07.
2017-03-14 01:58:35 -04:00
0f11f64022
gnu: guile-cairo: Honor the Guile effective version.
...
* gnu/packages/gtk.scm (guile-cairo)[arguments]: Add #:modules.
Get the effective version of Guile and use that in installation
directory names.
2017-03-13 22:26:54 +01:00
b97438650d
gnu: guile-cairo: Use 'modify-phases'.
...
* gnu/packages/gtk.scm (guile-cairo)[arguments]: Use 'modify-phases'.
2017-03-13 22:18:13 +01:00
12773de3e7
gnu: Add guile2.2-lib.
...
* gnu/packages/guile.scm (guile2.2-lib): New variable.
2017-03-13 21:52:38 +01:00
a71c863834
gnu: Add python-flask-login.
...
* gnu/packages/python.scm (python-flask-login, python2-flask-login): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:56 +01:00
78c5566365
gnu: Add python-flask-htmlmin.
...
* gnu/packages/python.scm (python-flask-htmlmin, python2-flask-htmlmin): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:55 +01:00
35db2d3cb7
gnu: Add python-htmlmin.
...
* gnu/packages/python.scm (python-htmlmin, python2-htmlmin): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:54 +01:00
1bbbb0b4af
gnu: diffoscope: Update to 78.
...
* gnu/packages/package-management.scm (diffoscope): Update to 78.
2017-03-13 19:16:19 +01:00
8298df96ac
gnu: Add minizip.
...
* gnu/packages/compression.scm (minizip): New variable.
2017-03-13 19:16:19 +01:00
dd8ecb386c
gnu: notmuch: Update to 0.24.
...
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.24.
2017-03-13 18:21:23 +01:00
17fb6fb105
gnu: xf86-video-intel: Update to 2.99.917-4-7e9e92c.
...
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-4-7e9e92c.
2017-03-13 18:21:23 +01:00
ca453df7c8
gnu: xf86-video-nouveau: Update to 1.0.14.
...
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.14.
2017-03-13 18:21:22 +01:00
4f3dcdd99b
gnu: nss, nss-certs: Update to 3.29.3.
...
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.3.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.3.
2017-03-13 18:21:22 +01:00
87f1c7efc1
gnu: nss: Use 'modify-phases' syntax.
...
* gnu/packages/gnuzilla.scm (nss)[arguments]: Use 'modify-phases'.
2017-03-13 18:21:22 +01:00
7a4dea524b
gnu: manaplus: Update to 1.7.3.4.
...
* gnu/packages/games.scm (manaplus): Update to 1.7.3.4.
2017-03-13 18:21:10 +03:00
846344d053
gnu: git-modes: Update to 1.2.4.
...
* gnu/packages/emacs.scm (git-modes): Update to 1.2.4.
2017-03-13 18:21:10 +03:00
2617050b3b
gnu: magit: Update to 2.10.3.
...
* gnu/packages/emacs.scm (magit): Update to 2.10.3.
2017-03-13 18:21:10 +03:00
0216137237
gnu: guile-next: Update to 2.1.8.
...
* gnu/packages/guile.scm (guile-next): Update to 2.1.8.
2017-03-13 12:22:38 +01:00
3288e647e3
gnu: r-hexbin: Update to 1.27.1-1.
...
The package tarball was updated in place, resulting in a change in the hash
value. We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
2017-03-13 10:34:00 +01:00
8f7ea70913
gnu: guile-next: Increase max-silent-time.
...
* gnu/packages/guile.scm (guile-next)[properties]: Add 'max-silent-time'.
2017-03-13 10:30:33 +01:00
59bb178cce
gnu: linux-libre@4.4: Update to 4.4.53.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.53.
2017-03-13 00:56:58 -04:00
7bc57e760c
gnu: linux-libre@4.9: Update to 4.9.14.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.14.
2017-03-13 00:56:58 -04:00
49a8c92cbe
gnu: linux-libre: Update to 4.10.2.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.2.
(%linux-libre-hash): Update hash.
2017-03-13 00:56:58 -04:00
108f69c448
gnu: ecl: Update to 16.1.3.
...
* gnu/packages/lisp.scm (ecl): Update to 16.1.3.
[arguments]: Use a different method to set the binary used for tests.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-12 23:47:40 -04:00
3f06f43058
gnu: irssi: Update to 1.0.2.
...
* gnu/packages/irc.scm (irssi): Update to 1.0.2.
2017-03-12 19:58:52 +01:00
998ac26a1e
gnu: tintin++: Use a mirror:// URI.
...
* gnu/packages/games.scm (tintin++)[source]: Use mirror://sourceforge.
2017-03-12 17:47:25 +01:00
301f12ec92
gnu: offlineimap: Update to 7.0.14.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.0.14.
2017-03-12 15:44:37 +01:00
0a6bd107e5
gnu: Add le-certs.
...
* gnu/packages/certs.scm (le-certs): New variable.
2017-03-12 03:23:16 -04:00
a5935d1946
gnu: Add r-tsne.
...
* gnu/packages/bioinformatics.scm (r-tsne): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
02eec38ee1
gnu: Add r-ranger.
...
* gnu/packages/statistics.scm (r-ranger): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
d1906e3147
gnu: Add r-tclust.
...
* gnu/packages/statistics.scm (r-tclust): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
5a200a24eb
gnu: Add r-sn.
...
* gnu/packages/statistics.scm (r-sn): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
06085b5bc5
gnu: Add r-numderiv.
...
* gnu/packages/statistics.scm (r-numderiv): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
fe68c8a990
gnu: Add r-mnormt.
...
* gnu/packages/statistics.scm (r-mnormt): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
362ea0dc29
gnu: Add r-rcppprogress.
...
* gnu/packages/statistics.scm (r-rcppprogress): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa890f6185
gnu: Add r-caret.
...
* gnu/packages/statistics.scm (r-caret): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
ab2ec643c3
gnu: Add r-car.
...
* gnu/packages/statistics.scm (r-car): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
a3eb8c8191
gnu: Add r-pbkrtest.
...
* gnu/packages/statistics.scm (r-pbkrtest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
51fc7d8c31
gnu: Add r-lme4.
...
* gnu/packages/statistics.scm (r-lme4): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
c549864d90
gnu: Add r-nloptr.
...
* gnu/packages/statistics.scm (r-nloptr): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
49dc1fa5cb
gnu: Add r-quantreg.
...
* gnu/packages/statistics.scm (r-quantreg): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
545d0789fc
gnu: Add r-matrixmodels.
...
* gnu/packages/statistics.scm (r-matrixmodels): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa84100011
gnu: Add r-modelmetrics.
...
* gnu/packages/statistics.scm (r-modelmetrics): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
21cfad44c1
gnu: Add r-rcppeigen.
...
* gnu/packages/statistics.scm (r-rcppeigen): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
0392f82fd5
gnu: Add r-minqa.
...
* gnu/packages/statistics.scm (r-minqa): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:05 +10:00
5a717a95b3
gnu: wine: Update to 2.3.
...
* gnu/packages/wine.scm (wine): Update to 2.3.
2017-03-12 00:00:25 +01:00
Ricardo Wurmus