The asdf documentation specifies that asdf:load-asd should be preferred to
calling load on a system definition file.
* guix/build/lisp-utils.scm (compile-system): Replace load with asdf:load-asd.
(system-dependencies): Likewise.
(test-system): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Add support for dependencies of the form (:version <name> <version>),
(:feature <feature> <dependency-specification>) and (:require <module-name>),
as defined by
<https://common-lisp.net/project/asdf/asdf.html#The-defsystem-grammar>.
* guix/build/lisp-utils.scm (normalize-dependency): New variable.
(make-asd-file)[dependencies]: Use it to generate dependencies with normalized
names.
[dependency-name]: New variable.
[registry]: Use it to flatten the normalized dependencies.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Previously, on machines where /etc/ssl/certs did exist, we'd have this:
$ unset SSL_CERT_DIR
$ unset SSL_CERT_FILE
$ guix pull
Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
guix pull: error: Git error: the SSL certificate is invalid
This is because we'd let OpenSSL look for certificates in its default
location, which is an empty directory in its own prefix.
* guix/scripts/pull.scm (honor-x509-certificates): New procedure.
(guix-pull): Use it instead of calling 'honor-lets-encrypt-certificates!'.
Previously a command like:
$(readlink -f ~/.config/guix/current)/bin/guix describe
would succeed without printing anything.
* guix/scripts/describe.scm (display-profile-info): Don't call
'generation-file-name' when NUMBER is zero.
* guix/scripts/pull.scm (display-profile-content): Likewise.
This could result in deadlock in unusual situations, whereby we'd start
waiting for a reply while the query hasn't been flushed to the socket.
* guix/store.scm (buffering-output-port)[flush]: Add call to
'force-output'.
(add-to-store): Add call to 'write-buffered-output'.
* guix/gnupg.scm (%gpgv-command, current-keyring): New variables
(gnupg-verify): Add optional 'keyring' parameter. Use 'gpgv' instead of
'gpg' and pass it '--keyring'.
(gnupg-receive-keys): Add optional 'keyring' parameter and honor it.
(gnupg-verify*): Add #:keyring and honor it.
* guix/scripts/refresh.scm (%options, show-help): Add '--keyring'.
(guix-refresh): Parameterize CURRENT-KEYRING.
* doc/guix.texi (Invoking guix refresh): Document '--keyring' and the
keybox format.
Fixes a regression introduced in
aed0a59405 whereby external channels would
fail to build due to the lack of a (git) module.
Reported by Alex ter Weele on #guix.
* guix/channels.scm (channel-instance-derivations)[guile-gcrypt]:
Remove.
[dependencies]: New variable.
Use it in the 2nd argument to 'build-channel-instance'.
Fixes a regression introduced in
aed0a59405 whereby 'git-predicate' would
throw to 'git-error instead of returning #f as the docstring says.
* guix/git-download.scm (git-predicate): Return #f upon 'git-error'.
Fixes <https://bugs.gnu.org/27925>.
* guix/git-download.scm (files->directory-tree)
(directory-in-tree?): Remove.
(git-file-list): New procedures.
(git-predicate): Use it instead of opening a pipe to 'git'. Remove
directory tree hack and rely exclusively on inode/device numbers.
Reported-by: Ludovic Courtès <ludo@gnu.org>.
* guix/scripts/build.scm (guix-build),
guix/scripts/package.scm (guix-package): Duplicate port before handing it to
build-output-port.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.
* guix/ui.scm (build-output-port): Add pattern for hash mismatch error; be
more careful with error messages in verbose mode.
Fixes <https://bugs.gnu.org/32686>.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.
* guix/build/profiles.scm (ensure-writable-directory): Add #:symlink.
[absolute?]: New procedure.
[unsymlink]: Use it to determine how to resolve readlink's result.
(build-profile): Pass SYMLINK to 'ensure-writable-directory'.
* tests/profiles.scm ("profile-derivation when etc/ is a relative symlink"):
New test.
* guix/profiles.scm (package->manifest-entry): Add #:properties and
honor it.
* guix/scripts/package.scm (package-provenance)
(package->manifest-entry*): New procedures.
(transaction-upgrade-entry, options->installable): Use
'package->manifest-entry*' instead of 'package->manifest-entry'.
Fixes <https://bugs.gnu.org/32618>.
Reported by Eric Brown <brown@fastmail.com>.
* guix/git.scm (update-cached-checkout): Remove "origin/" from default
REF. Define CANONICAL-REF and use it instead of REF.
(latest-repository-commit): Remove "origin/" from default REF.
* guix/channels.scm (%default-channels): Remove "origin/" from
'branch'.
This fixes a regression introduced in
ca71942445 whereby external channels would
fail to build due to the lack of (gcrypt …) modules.
* guix/channels.scm (channel-instance-derivations): Add 'guile-gcrypt'.
Pass it along CORE to 'build-channel-instance'.
* guix/channels.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/scripts/pull.scm: Use it.
(%default-options): Remove 'repository-url' and 'ref'.
(show-help, %options): Add '--channels'.
(%self-build-file, %pull-version, build-from-source)
(whole-package-for-legacy, derivation->manifest-entry): Remove. These
now exist in a similar form in (guix channels).
(build-and-install): Change 'source' to 'instances'. Remove #:url,
#:branch, and #:commit. Rewrite using 'channel-instances->manifest'.
(channel-list): New procedure.
(guix-pull): Parameterize %REPOSITORY-CACHE-DIRECTORY. Call
'honor-lets-encrypt-certificates!' unconditionally. Load
~/.config/guix/channels.scm. Rewrite to use (guix channels).
[use-le-certs?]: Remove.
* po/guix/POTFILES.in: Add (guix channels).
* doc/guix.texi (Invoking guix pull): Group the description of '--url',
'--commit', and '--branch'. Remove mention of 'GUIX_PULL_URL'. Add
references to "Channels". Document '--channels'.
(Channels): New node.
(Defining Packages): Link to "Channels" instead of "Package Modules".
(Invoking guix edit): Link to "Package Modules" instead of "Defining
Packages".
(Package Modules): Document both GUIX_PACKAGE_PATH and channels.
Fixes a test failure introduced in
de5cbd4a38.
* guix/records.scm (abi-check): Refer to TYPE in an unquoted context so
we get at the RTD.
* tests/records.scm ("ABI checks"): Adjust 'catch' handler to changes
in the 'record-abi-mismatch-error' arguments.
* guix/import/pypi.scm (guess-requirements): Extract "requires.txt" from the
egg-info directory in addition to "requirements.txt"; strip off version
constraints; use call-with-temporary-directory.
Previously, 'display-error' (as used by 'warn-about-load-error', for
instance) would be called with a wrong number of arguments when a
'record-abi-mismatch-error' was caught:
warning: failed to load '(gnu tests install)':
Backtrace:
[...]
ERROR: In procedure display-error:
Wrong number of arguments to #<procedure display-error (_ _ _ _ _ _)>
Now you get warnings and error reports as intended:
warning: failed to load '(gnu tests install)':
In procedure abi-check: <openssh-configuration>: record ABI mismatch; recompilation needed
warning: failed to load '(gnu tests ssh)':
In procedure abi-check: <openssh-configuration>: record ABI mismatch; recompilation needed
* guix/records.scm (print-record-abi-mismatch-error): Remove.
Remove top-level call to 'set-exception-printer!'.
(abi-check): Use arguments as expected by 'display-error'.
The autoload hack was added a year ago, before 0.14.0, i.e., before any
release would depend on Guile-Git. Both 0.14.0 and 0.15.0 required
Guile-Git, and 'guix pull' now automatically pulls it in, so this hack
is no longer necessary.
* guix/scripts/pull.scm: Use (git) and (guix git). Remove top-level
call to 'module-autoload!'.
(ensure-guile-git!): Remove.
(guix-pull): Remove call to 'ensure-guile-git!'.
Previously we'd have lots of useless entries on the search paths, such
as libtasn1, libidn2, zlib, gmp, etc. because they are propagated by
gnutls.
* guix/self.scm (guix-command)[source-directories, object-directories]:
New variables. Use them in the body of "guix-command". Filter their
items with 'file-exists?'.
Fixes <https://bugs.gnu.org/19973>.
Reported by Mark H Weaver <mhw@netris.org>.
* guix/build/debug-link.scm: New file.
* guix/build/graft.scm (%graft-hooks): New variable.
(graft): Add #:hooks and honor it.
* guix/grafts.scm (graft-derivation/shallow): Add (guix build
debug-link) and (guix elf) to #:modules.
* tests/debug-link.scm: New file.
* Makefile.am (MODULES): Add guix/build/debug-link.scm.
(SCM_TESTS): Add tests/debug-link.scm.
This allows "guix refresh" to work for many packages where it would
previously fail with "no updater for PACKAGE".
* guix/import/github.scm (fetch-releases-or-tags): New procedure.
(latest-released-version): Use it instead of calling 'json-fetch'.
Adjust 'hash-ref' call.
The venerable search.cpan.org has retired[0].
[0]: https://log.perl.org/2018/05/goodbye-search-dot-cpan-dot-org.html
* guix/import/cpan.scm (cpan-home): Generate metacpan.org home page URIs.
Update all previously generated ones in (gnu packages) to their
canonical new homes.
Fixes <https://debbugs.gnu.org/32387>.
* guix/import/cabal.scm (eval-cabal): Avoid mis-match when the custom-setup
section cannot be created.
* guix/import/hackage.scm (cabal-custom-setup-dependencies->names): Do not
crash when cabal-package-custom-setup returns #F.
* gnu/packages/python.scm (python-3.6): Rename to ...
(python-3.7): ... this. Update to 3.7.0.
[arguments]: Remove phase 'patch-timestamp-for-pyc-files' and related code.
Add phases to unset SOURCE_DATE_EPOCH during the check phase.
(python-3): Is now PYTHON-3.7.
* guix/build/python-build-system.scm (enable-bytecode-determinism): Don't set
DETERMINISTIC_BUILD.
This is a followup to 30d722c392.
* guix/gexp.scm (imported-files/derivation): Remove
#:deprecation-warnings. Pass "GUILE_WARN_DEPRECATED=no"
unconditionally to #:env-vars of 'gexp->derivation'. Adjust caller.
(imported-files): Remove #:deprecation-warnings and adjust callers.
(imported-modules): Likewise.
(compiled-modules, gexp->derivation): Adjust accordingly.
Threaded compression makes archives non-deterministic: the result depends on
the number of threads used for compressing. See <https://bugs.gnu.org/31015>.
This reverts commit 63102406f2.
Threaded compression makes tarballs non-deterministic: the result depends on
the number of threads used for compressing. See <https://bugs.gnu.org/31015>.
This reverts commit c8a3dea847.
Previously, store items registered in the database by this code (for
instance, store items retrieved by 'guix offload' and passed to
'restore-file-set') would have an mtime of 0 instead of 1.
This would cause problems for things like .go files: Guile would
consider them to be older than the corresponding .scm file, and
consequently it would ignore them and possibly use another (incorrect)
.go file.
Reported by Ricardo Wurmus.
* guix/store/database.scm (reset-timestamps): Pass 1, not 0, to
'utime'.
* tests/store-database.scm ("register-path"): Check the mtime of FILE
and REF.
Fixes <https://bugs.gnu.org/32161>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
This mostly reverts 83099892e0.
* guix/store/deduplication.scm (counting-wrapper-port): New procedure.
(nar-sha256): Use it.
* guix/hash.scm (open-sha256-port)[position]: New variable.
[get-position]: New procedure.
Pass it to 'make-custom-binary-output-port'.
* tests/hash.scm ("open-sha256-port, hello"): Test 'port-position'.
That way, the source of most nodes is now a content-addressed store item
instead of a derivation.
* guix/self.scm (<file-mapping>): New record type.
(file-mapping-compiler): New procedure.
(scheme-node): Use 'file-mapping' instead of 'imported-files'.
(imported-files): Remove.
* guix/gexp.scm (imported-files/derivation): Add #:symlink? and honor
it.
(imported-files): Pass #:symlink? to 'imported-files/derivation'.
* tests/gexp.scm ("imported-files with file-like objects"): Add 'file=?'
and use it instead of calling 'readlink'.
* guix/gexp.scm (gexp->derivation): Add #:import-creates-derivation?.
Pass #:derivation? to 'imported-modules' and 'compiled-modules'. In -L
argument, check whether MODULES is a derivation.
(%not-slash): New variable.
(file-mapping->tree): New procedure.
(imported-files): Rename to...
(imported-files/derivation): ... this.
(imported-files): New procedure. Rewrite in terms of
'interned-file-tree' when possible; add #:derivation? parameter.
(imported-modules, compiled-modules): Add #:derivation? parameter and
pass it to 'imported-files'.
* guix/packages.scm (patch-and-repack): Pass
#:import-creates-derivation? to 'gexp->derivation'.
* tests/gexp.scm ("imported-files"): Adjust to no longer expect a
derivation.
* guix/store.scm (%not-slash): New variable.
(add-file-tree-to-store, interned-file-tree): New procedures.
* tests/store.scm ("add-file-tree-to-store"): New test.
* guix/serialization.scm (write-contents-from-port): New procedure.
(write-contents): Write in terms of 'write-contents-from-port'.
(filter/sort-directory-entries, write-file-tree): New procedures.
(write-file): Rewrite in terms of 'write-file-tree'.
* tests/nar.scm ("write-file-tree + restore-file"): New test.
Previously, if the tests didn't pass, the check phase would evaluate to #f,
but the package would be built sucessfully. This changes all the phases to
raise exceptions if errors are encountered, and return #t otherwise.
This involves using invoke rather than system*, so that exceptions are raised
if the program exits with a status other than 0, and also returning #t at the
end of functions.
* gnu/build/ruby-build-system.scm (unpack): Use invoke rather than system*,
and return #t at the end.
(build, check): Use invoke rather than system*.
(install): Remove the use of "and", and rewrite the error handling to raise an
exception.
(wrap): Return #t.
* guix/scripts/pull.scm (display-profile-news): New procedure.
(build-and-install): Call it.
(display-new/upgraded-packages): Add #:heading and honor it.
Reported by Roel Janssen <roel@gnu.org>
at <https://lists.gnu.org/archive/html/guix-devel/2018-07/msg00036.html>.
* guix/profiles.scm (switch-to-generation): Use (basename generation) as
the symlink target.
* guix/scripts/package.scm (build-and-use-profile): Likewise,
use (basename name) as the symlink target.
* tests/guix-package.sh: Adjust --roll-back test accordingly. Add
explicitly test with '-p foo/prof'.
* guix/import/cabal.scm (eval-cabal): Modify.
* tests/hackage.scm (test-cabal-4): New variable and test.
(test-cabal-5): New variable and test.
(test-cabal-6): New variable and test.
* guix/import/cabal.scm (make-cabal-parser): Modify.
(is-any): New variable.
(is-none): New variable.
(lex-any): New procedure.
(lex-none): New procedure.
(lex-word): Modify.
(eval-cabal): Modify.
Suggested by Mike Gerwitz <mtg@gnu.org>.
* guix/gnu-maintenance.scm (%package-list-url): Use the .rec file.
(%package-description-url): Likewise.
(official-gnu-packages)[read-records]: Skip record descriptors.
Rename fields to use underscores instead of hyphens.
* guix/profiles.scm (profile-search-paths): New procedure.
* guix/scripts/environment.scm (evaluate-search-paths): Remove.
(create-environment): Replace 'paths' with 'manifest'. Use
'profile-search-paths' instead of 'evaluate-search-paths'.
(show-search-paths): Likewise.
(launch-environment): Replace 'paths' with 'manifest'. Make 'pure?' a
keyword parameter.
(launch-environment/fork, launch-environment/container): Likewise.
(guix-environment): Remove 'paths' variable. Adjust callers of the
above procedures accordingly.
* guix/scripts/environment.scm (strip-input-name)
(package+propagated-inputs, package-or-package+output?)
(compact): Remove.
(inputs->profile-derivation): Rename to...
(manifest->derivation): ... this. Replace 'inputs' parameter with
'manifest'.
(input->manifest-entry): New procedure.
(package-environment-inputs): Rewrite to return a list of manifest
entries.
(options/resolve-packages): Rewrite to return a manifest.
(guix-environment): Remove 'inputs'. Define 'paths' in terms of
'manifest-search-paths'.
* guix/profiles.scm (manifest-search-paths): New procedure.
(profile-derivation)[builder]: Use it.
* guix/build/profiles.scm (build-etc/profile): Remove $PATH.
* guix/scripts/container.scm (guix-container):
* guix/scripts/import.scm (guix-import):
* guix/scripts/substitute.scm (guix-substitute): Add -V as the short option
for --version to match show-help's description.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Until now, running "guix pack -s i686-linux" on an x86_64-linux machine,
for instance, would use an x86_64 guile for module derivations. This
was OK until now, but would break when passing "--localstatedir" due to
the introduction of guile-sqlite3: we'd be using the i686 guile-sqlite3
along with the x86_64 guile.
* guix/scripts/pack.scm (guix-pack): Pass the 'system option from OPTS
to 'package-derivation'.
Previously, entries for 'guix.fr.info' would end up in 'dir', above the
'guix.info' entries; consequently, running 'info guix' would actually
open 'guix.fr.info', which was confusing for non-French readers.
* guix/profiles.scm (info-dir-file)[glibc-utf8-locales]: New variable.
[build](info-file-language): New procedure.
(install-info): Use it, to create 'dir.LANG' files.
Set GUIX_LOCPATH.
This reverts commit 24420f5ffa.
This broke 'package-transitive-supported-systems', which would return
the union of supported systems instead of the intersection.
This fixes a regression introduced in
df2f6400b1fbc282ef4d6dd7124ea1c17adc23c2: since the new
'register-path' (actually 'reset-timestamps') would make files
read-only, 'delete-file-recursively' would fail to delete them. Thus,
re-running 'guix system init' on an already-populated store would fail
with a 'delete-file' EPERM.
* guix/scripts/system.scm (copy-item): Use 'lstat' instead of
'file-exists?'. Call 'make-file-writable' on each directory below
DEST.
Previously they'd always be placed next to TO-REPLACE, which would lead
to EPERM in some cases.
* guix/store/deduplication.scm (replace-with-link): Add #:swap-directory
parameter and honor it. Add call to 'make-file-writable'. Catch
'system-error' around 'rename-file'.
(deduplicate): Pass #:swap-directory and remove uses of
'false-if-system-error'.
* tests/store-deduplication.scm ("deduplicate"): Add 'chmod' call.
This version is 13% faster than the one above when timing:
(fold-packages (lambda (p x)
(package-transitive-supported-systems p))
'())
* guix/packages.scm (package-transitive-supported-systems): Make
'systems' a set instead of calling 'lset-intersection' repeatedly.
* guix/self.scm (guix-command): Add #:guile and pass it to 'program-file'.
(whole-package): Add #:guile and pass it to 'guix-command'.
(compiled-guix): Pass #:guile to 'guix-command' and 'whole-package'.
This follows up commit d5b5a15a40 which doesn't
work because %current-system etc expands before the actual build.
Fixes <https://bugs.gnu.org/31719>.
* guix/build-system/meson.scm (meson-build)[builder]: Compare against the
already existing "system" variable rather than (%current-system).
Previously "guix package -s python" would have 'python2-zope-interface' as
its first result (relevance: 10), followed by many other python-*
packages with the same score, while 'python' itself would come
later (relevance: 7).
This change makes 'python' the first result (relevance: 27).
Reported by Gábor Boskovits.
* guix/ui.scm (relevance)[score]: Use 'fold-matches' instead of
'match:count' to counter the number of maches. Give more weight to
exact matches.
Fixes <https://bugs.gnu.org/31983>.
Reported by Fis Trivial <ybbs.daans@hotmail.com>.
* guix/self.scm (specification->package): Add "gnutls" and
"guile2.0-gnutls".
(compiled-guix)[gnutls]: New variable.
[dependencies]: Add it.
Fixes a regression introduced in
c45477d2a1.
Reported by Christopher Baines <mail@cbaines.net>.
* guix/scripts/pack.scm (not-config?, guile-sqlite3&co): New variables.
(self-contained-tarball)[not-config?]: Remove.
[build]: Use GUILE-SQLITE3&CO for 'with-extensions'.
(squashfs-image)[libgcrypt]: New variable.
[build]: Use 'source-module-closure', 'make-config.scm', and
'with-extensions'.
(docker-image)[not-config?]: Remove.
Without this change, running guix pack fails as (guix sets) is missing when
compiling (guix build store-copy).
* guix/scripts/pack.scm (docker-image): Move (guix build store-copy) to within
the source-module-closure call.
This is a followup to d6b5aa0b03.
* guix/self.scm (%config-variables): Remove %CONFIG-DIRECTORY,
%STATE-DIRECTORY, %STORE-DATABASE-DIRECTORY, and %STORE-DIRECTORY.
(make-config.scm): Define them here.
* build-aux/build-self.scm (%config-variables, make-config.scm):
Likewise.
Previously the %CONFIG-VARIABLES list would be generated based on what
the current (guix config) contains. Thus, it would include
'%guix-register-program', which we recently removed, because
existing (guix config) most likely contained that variable. Since its
value could differ from machine to machine, the build farm could be
building a different config.scm, thereby preventing people from getting
substitutes.
* guix/self.scm (%config-variables): Turn into a white list instead of
taking all the remaining variables from the current (guix config).
* build-aux/build-self.scm (%config-variables): Likewise.
* guix/self.scm (guix-command): Add 'compiled-modules' parameter and
honor it.
(whole-package): Likewise.
(compiled-guix)[built-modules]: Turn into a procedure.
When PULL-VERSION is 1, use separate source and compiled modules.
When PULL-VERSION is 0, return a single directory containing both .scm
and .go files.
* guix/utils.scm (target-64bit?): New procedure.
* gnu/packages/samba.scm (ldb)[inputs]: Only add LMDB on 64-bit systems.
[arguments]: Make #:tests? conditional on LMDB availability.
* gnu/packages/package-management.scm (guix-daemon): New variable.
* guix/self.scm (whole-package): Add #:daemon and honor it.
(compiled-guix): Pass #:daemon to 'whole-package'.
* guix/ui.scm (display-generation): Allow translation of dates.
The format string will show dates as month day year, but some languages use a
different convention.
* guix/build/store-copy.scm (store-info): Export.
* guix/store/database.scm (register-items): New procedure.
(register-path): Implement in terms of 'register-items'.
* gnu/build/install.scm (register-closure): Use 'register-items' instead
of 'for-each' and 'register-path'.
* gnu/build/install.scm (register-closure): Add #:reset-timestamps? and
and #:schema; honor them. Rewrite in terms of 'register-path'.
(populate-single-profile-directory): Add #:schema and honor it. Make
/var/guix/profiles and /var/guix/gcroots.
* gnu/build/vm.scm (root-partition-initializer): Pass
#:reset-timestamps? to 'register-closure'.
* gnu/system/vm.scm (not-config?): New procedure.
(guile-sqlite3&co): New variable.
(expression->derivation-in-linux-vm)[config]: New variable.
[builder]: Use 'with-extensions'.
(iso9660-image)[schema, config]: New variables.
Wrap build expression in 'with-extensions'; add 'sql-schema' call.
Remove GUIX from INPUTS.
(qemu-image)[schema, config]: New variables.
Wrap body in 'with-extensions'.
(system-docker-image)[not-config?]: Remove.
[config]: Use 'make-config.scm'.
[schema]: New variable.
[build]: Use 'with-extensions'. Add call to 'sql-schema'. Remove GUIX
from INPUTS.
* gnu/system/file-systems.scm (%store-prefix): Check whether
'%store-prefix' is defined.
* guix/scripts/pack.scm (self-contained-tarball)[not-config?]
[libgcrypt, schema]: New variables.
[build]: Wrap in 'with-extensions'. Adjust imported module list to use
'make-config.scm' for (guix config).
* guix/store/deduplication.scm (get-temp-link): Turn 'args' in the 'catch'
handler into a rest argument.
(deduplicate): Use 'lstat' instead of 'file-is-directory?' to properly
handle symlinks. When iterating over the result of 'scandir', exclude
the ".links" sub-directory.
* tests/store-deduplication.scm ("deduplicate"): Create sub-directories
and call 'deduplicate' directly on STORE.
* guix/store/database.scm (sqlite-register): Add #:schema. Parameterize
'sql-schema' based on this.
(register-path): Add #:schema and pass it to 'sqlite-register'.
The previous implementation of 'read-reference-graph' was good enough
for many use cases, but it discarded the graph structure, which is
useful information in some cases.
* guix/build/store-copy.scm (<store-info>): New record type.
(read-reference-graph): Rewrite to return a list of <store-info>.
(closure-size, populate-store): Adjust accordingly.
* gnu/services/base.scm (references-file): Adjust accordingly.
* gnu/system/vm.scm (system-docker-image): Likewise.
* guix/scripts/pack.scm (squashfs-image, docker-image): Likewise.
* tests/gexp.scm ("gexp->derivation #:references-graphs"): Likewise.
* guix/store/database.scm (add-reference-sql): Remove nested SELECT.
(add-references): Expect REFERENCES to be a list of ids.
(sqlite-register): Call 'path-id' for each of REFERENCES and pass it to
'add-references'.
* tests/store-database.scm ("register-path with unregistered references"):
New test.
* guix/scripts/offload.scm (call-with-timeout): New procedure.
(with-timeout): New macro.
(process-request): Use it around 'transfer-and-offload' call.
* guix/scripts/pull.scm (derivation->manifest-entry): Turn COMMIT into a
keyword parameter; add #:url and #:branch. Add a 'source' property to
the manifest entry.
(build-and-install): Add #:url and #:branch and pass it to
'derivation->manifest-entry'.
(guix-pull): Adjust accordingly.
* guix/profiles.scm (<manifest-entry>)[properties]: New field.
(manifest->gexp)[entry->gexp]: Serialize it.
(sexp->manifest)[sexp->manifest-entry]: Deserialize it.
* guix/packages.scm (patch-file-name): New procedure.
(%vulnerability-regexp): New variable.
(package-patched-vulnerabilities): New procedure.
* guix/scripts/lint.scm (patch-file-name): Remove.
(check-vulnerabilities): Adjust to use
'package-patched-vulnerabilities'.
* tests/packages.scm ("package-patched-vulnerabilities"): New test.
This should allow 'guix pull' to complete even when invoked from a Guix
that predates commit 5d669883ec.
* guix/ui.scm: Use #:hide instead of #:select. This is a followup to
5d669883ec.
* guix/self.scm (sub-directory, locale-data): New procedures.
(guix-command): Add SOURCE parameter. Call 'locale-data' when SOURCE is
true and use it in staged 'bindtextdomain' calls.
(whole-package): Add #:command and honor it.
(compiled-guix): Pass #:command to 'whole-package'.
* guix/scripts/pull.scm (%pull-version): New variable.
(build-from-source): Pass #:pull-version to BUILD.
(whole-package-for-legacy, derivation->manifest-entry): New procedure.
(build-and-install): Rewrite in terms of 'build-and-use-profile'.
* guix/scripts/system.scm (maybe-suggest-running-guix-pull)[latest]:
Switch to "/current".
* scripts/guix.in (augment-load-paths!): Remove use of
~/.config/guix/latest.
* build-aux/compile-as-derivation.scm: Replace "/guix/latest/" with
"/current/share/guile/site/X.Y"
* guix/scripts.scm (warn-about-old-distro)[age]: Check "/current"
instead of "/latest".
* doc/guix.texi (Invoking guix pull): Document it.
* doc/contributing.texi (Running Guix Before It Is Installed): Remove
footnote about abusing ~/.config/guix/latest.
* guix/self.scm (guix-command): New procedure.
(compiled-guix): Add #:pull-version parameter.
[command, package]: New variables.
Honor PULL-VERSION.
(guix-derivation): Add #:pull-version and pass it to 'compiled-guix'.
* build-aux/build-self.scm (build-program): Add #:pull-version
parameter. Pass it to 'guix-derivation'.
(build): Add #:pull-version and pass it to 'build-program'.
* build-aux/compile-as-derivation.scm: Pass #:pull-version to BUILD.
The call was unnecessary and would cause test failures because
'test-tmp/db' does not exist initially.
* guix/config.scm.in (%store-database-directory): Remove
'canonicalize-path' call.
Previously, modules like gnu/build/cross-toolchain.scm or
gnu/build/svg.scm were missing from the result.
* guix/self.scm (compiled-guix)[*system-modules*]: Add gnu/build/* to
#:extra-files.
(imported-files)[same-target?]: New procedure.
[build]: Call 'delete-duplicates' on FILES.
* guix/self.scm (compiled-files): Add 'module-files' parameter.
[build]: 'process-directory' now honors MODULE-FILES instead of
building any '.scm' file it sees.
(scheme-node): Adjust accordingly.
Fixes a regression introduced in
331ac4cc23 whereby "guile-gdbm-ffi" would
now be mandatory.
* guix/self.scm (specification->package): Add "guile-gdbm-ffi" and
"guile2.0-gdbm-ffi".
(compiled-guix)[guile-gdbm-ffi]: New variables.
[dependencies]: Add it.
* m4/guix.m4 (GUIX_CHECK_GUILE_SQLITE3): New macro.
* configure.ac: Use it and define 'HAVE_GUILE_SQLITE3'.
* guix/self.scm (specification->package): Add "guile-sqlite3".
(compiled-guix)[guile-sqlite3]: New variable.
[dependencies]: Add it.
* guix/profiles.scm (manual-database)[build]: Use 'with-extensions'.
Remove 'add-to-load-path' call.
* guix/man-db.scm: Use (gdbm) the normal way; remove 'module-autoload!'
call.
Until now 'compiled-modules' would override (guix build utils) with its
own. Thus, when asked to build a different (guix build utils),
via #:module-path, it would fail badly because a (guix build utils)
module was already loaded and possibly incompatible with the new one.
This happened when running 'guix pull --branch=core-updates' from
current master: in 'core-updates', (guix build utils) exports
'ignore-error?' but in 'master' it does not. Thus, 'guix pull' would
fail with:
no binding `invoke-error?' in module (guix build utils)
builder for `/gnu/store/…-module-import-compiled.drv' failed with exit code 1
cannot build derivation `/gnu/store/…-compute-guix-derivation.drv': 1 dependencies couldn't be built
This patch fixes it.
* guix/gexp.scm (compiled-modules)[build-utils-hack?]: New variable.
[build]: Load MODULES/build/utils.scm when it exists.
* guix/scripts/system.scm (profile-boot-parameters): Reverse
generation-numbers list. This allows old generations to be listed from most
recent to oldest in bootloaders configuration files.
By mistake we were adding more dependencies than needed to the Scheme
derivations.
* guix/self.scm (compiled-guix)[dependencies]: Use
'package-transitive-propagated-inputs', not 'package-transitive-inputs'.
The 'title' field was easily overlooked and was an endless source of
confusion. Now, the value of the 'device' field is self-contained.
* gnu/system/file-systems.scm (<file-system>): Change constructor name
to '%file-system'.
[title]: Remove.
(<file-system-label>): New record type with printer.
(report-deprecation, device-expression)
(process-file-system-declaration, file-system): New macros.
(file-system-title): New procedure.
(file-system->spec, spec->file-system): Adjust to handle
<file-system-label>.
* gnu/system.scm (bootable-kernel-arguments): Add case for
'file-system-label?'.
(read-boot-parameters): Likewise.
(mapped-device-user): Avoid 'file-system-title'.
(fs->boot-device): Remove.
(operating-system-boot-parameters): Use 'file-system-device' instead of
'fs->boot-device'.
(device->sexp): Add case for 'file-system-label?'.
* gnu/bootloader/grub.scm (grub-root-search): Add case for
'file-system-label?'.
* gnu/system/examples/bare-bones.tmpl,
gnu/system/examples/beaglebone-black.tmpl,
gnu/system/examples/lightweight-desktop.tmpl,
gnu/system/examples/vm-image.tmpl: Remove uses of 'title'.
* gnu/system/vm.scm (virtualized-operating-system): Remove uses of
'file-system-title'.
* guix/scripts/system.scm (check-file-system-availability): Likewise,
and adjust fix-it hint.
(check-initrd-modules)[file-system-/dev]: Likewise.
* gnu/build/file-systems.scm (canonicalize-device-spec): Remove 'title'
parameter.
[canonical-title]: Remove.
Match on SPEC's type rather than on CANONICAL-TITLE.
(mount-file-system): Adjust caller.
* gnu/build/linux-boot.scm (boot-system): Interpret ROOT here.
* gnu/services/base.scm (file-system->fstab-entry): Remove use of
'file-system-title'.
* doc/guix.texi (File Systems): Remove documentation of the 'title'
field. Rewrite documentation of 'device' and document
'file-system-label'.
* guix/records.scm (print-record-abi-mismatch-error): New procedure.
<top level>: Add 'set-exception-printer!' call.
(current-abi-identifier, abi-check): New procedures.
(make-syntactic-constructor): Add #:abi-cookie parameter. Insert calls
to 'abi-check'.
(define-record-type*)[compute-abi-cookie]: New procedure.
Use it and emit a definition of the 'current-abi-identifier' for TYPE.
* tests/records.scm ("ABI checks"): New test.
Until now we'd get pointless messages like:
warning: collision encountered:
/gnu/store/…-gtk-icon-themes/share/icons/hicolor/icon-theme.cache
/gnu/store/…-inkscape-0.92.3/share/icons/hicolor/icon-theme.cache
warning: choosing /gnu/store/…-gtk-icon-themes/share/icons/hicolor/icon-theme.cache
* guix/build/union.scm (%harmless-collisions): New variable.
(warn-about-collision): Honor it.
Fixes <https://bugs.gnu.org/31450>.
Reported by Martin Castillo <castilma@uni-bremen.de>.
* guix/gexp.scm (gexp->derivation): Pass #:deprecation-warnings to
'imported-modules'.
(imported-files): Add #:deprecation-warnings and pass #:env-vars to
'gexp->derivation'.
(imported-modules): Add #:deprecation-warnings and pass it to
'imported-files'.
Previously things like:
guix pack -R guile guile-json
would lead to a profile without Guile-JSON, and to an 'etc/profile' that
does not define 'GUILE_LOAD_PATH'.
* guix/scripts/pack.scm (wrapped-package)[build]: Link top-level entries
of PACKAGE into OUTPUT.
* guix/scripts/pack.scm (self-contained-tarball)[build](symlink->directives):
Do not add a 'directory' directive for "/". Previously, as soon as we
were using '-S /bin=bin' or similar, we would add every entry a second
time in the tarball; this would translate as hard links in the tarball,
which tar < 1.30 sometimes fails to extract.
Pass symlinks defined in DIRECTIVES to 'tar'.
* gnu/packages/aux-files/run-in-namespace.c: New file.
* Makefile.am (AUX_FILES): Add it.
* guix/scripts/pack.scm (<c-compiler>): New record type.
(c-compiler, bootstrap-c-compiler, c-compiler-compiler): New procedures.
(self-contained-tarball): Use
'relative-file-name' for the SOURCE -> TARGET symlink.
(docker-image): Add 'defmod' to please Geiser.
(wrapped-package, map-manifest-entries): New procedures.
(%options, show-help): Add --relocatable.
(guix-pack): Honor it.
* guix/profiles.scm (manifest-lookup-package)[entry-lookup-package]: Add
case where 'manifest-entry-item' returns something that's neither a
string nor a package.
* guix/build/union.scm (symlink-relative): New procedure.
* guix/build/profiles.scm: Re-export it.
(build-profile): Add #:symlink and pass it to 'union-build'.
* guix/profiles.scm (profile-derivation): Add #:relative-symlinks?.
Pass #:symlink to 'build-profile'.
* tests/profiles.scm ("profile-derivation relative symlinks, one entry")
("profile-derivation relative symlinks, two entries"): New tests.
* guix/build/union.scm (%not-slash): New variable.
(relative-file-name): New procedure.
* tests/union.scm (test-relative-file-name): New macro and tests.
* guix/packages.scm (package-full-name): By default, use "@" to separate
the package name and package version. Add an optional delimiter
argument so that there is still a way to explicitly use a different
delimiter.
* gnu/packages/commencement.scm (gcc-boot0) <unpack-gmp&co>: Adjust
accordingly.
* tests/graph.scm: Adjust accordingly.
* tests/profiles.scm: Adjust accordingly.
* NEWS: Mention the change.
Fixes: <https://bugs.gnu.org/31088>.
Reported by Pierre Neidhardt <ambrevar@gmail.com>.
Fixes a regression introduced in
aad16cc196.
Reported by Julien Lepiller.
* guix/scripts/pack.scm (guix-pack)[manifest-from-args]: In
'match-lambda', add clause for single packages.
* tests/guix-pack.sh: Add test for '-e'.
* guix/build/gremlin.scm (<dynamic-entry>): New record type.
(raw-dynamic-entries): Return a list of <dynamic-entry>.
(dynamic-entries): Adjust accordingly and return a list of <dynamic-entry>.
(elf-dynamic-info)[matching-entry]: New procedure.
Use it.
Previously they would silently be ignored.
* guix/scripts/pack.scm (guix-pack)[manifest-from-args]: Add 'store'
parameter. Call 'options->transformation' and use it.
Move 'with-store' and 'parameterize' around the 'let'.
* tests/guix-pack.sh: Add test using '--with-source'.
* guix/scripts/pack.scm: Do not autoload (gnu packages base).
Previously, we could end up with 'canonical-package' as an unbound
variable because of the incorrect autoload spec.
This introduces an intermediate derivation, thereby reducing the amount
of rebuild that needs to happen when "leaf" package modules are
modified.
* guix/self.scm (compiled-guix)[*core-package-modules*]: New variable.
[*package-modules*, *system-modules*, *cli-modules*]: Depend on it.
Add it to the directory union.
Fixes <https://bugs.gnu.org/31374>.
* guix/build/ant-build-system.scm (generate-jar-indices): New procedure.
(%standard-phases)[generate-jar-indices]: New phase.
* guix/ui.scm (print-unbound-variable-error): Add "error:" to the
message.
(report-unbound-variable-error): New procedure, with code formerly in
'report-load-error'.
(report-load-error): Use it.
(call-with-unbound-variable-handling): New procedure.
(with-unbound-variable-handling): New macro.
* guix/scripts/build.scm (options->derivations): Wrap body in
'with-unbound-variable-handling'.
* tests/guix-build.sh (GUIX_PACKAGE_PATH): Add test.
Byte compilation failures were ignored prior to this change.
* guix/build/emacs-utils.scm (emacs-byte-compile-directory): Fail when there
are compilation errors.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
Previously we could end up with only a subset of the modules built.
Fixes <https://bugs.gnu.org/31329>.
* guix/build/compile.scm (call/exit-on-exception): New procedure.
(exit-on-exception): New macro.
(compile-files): Use it.
* guix/scripts/weather.scm (report-server-coverage): Remove 'missing'
binding above 'queued-subset' call. Before that 'queued-subset' would
be called with a number instead of a list.
Fixes <https://bugs.gnu.org/29707>.
Reported by Clément Lassieur <clement@lassieur.org>.
* guix/scripts/system/search.scm (service-type-default-shepherd-services)
(service-type-shepherd-names): New procedures.
(service-type->recutils): Use it.
* tests/guix-system.sh: Add test.
Previously, if you wrote (device "my-label") without (title 'label),
you'd get:
guix system: error: stat: No such file or directory: "my-label"
Now you get a proper error and a hint.
Reported by Pierre-Antoine Rouby.
* guix/scripts/system.scm (check-file-system-availability)[literal]: New
variable. Loop over LITERAL.
* gnu/system/file-systems.scm (%pseudo-file-system-types): New variable.
* guix/ui.scm (display-hint): Make public.
* guix/build/emacs-utils.scm: Use (guix build utils) for invoke.
(emacs-batch-eval, emacs-batch-edit-file): Replace system* with invoke.
* guix/build/emacs-build-system.scm (make-autoloads): No need to return #t
explicitly since emacs-generate-autoloads now uses invoke.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
* guix/build/emacs-build-system.scm (set-emacs-load-path): Include Emacs Lisp
directories from all inputs. Also, add the unpacked source directory to
EMACSLOADPATH.
(emacs-inputs, emacs-inputs-directories, emacs-input->el-directory,
emacs-inputs-el-directories): Remove.
(%standard-phases): Move set-emacs-load-path phase to after unpack phase.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
Fixes a regression introduced in 20927c9331.
Reported by Eric Bavier <ericbavier@centurylink.net>.
* guix/download.scm (url-fetch/tarbomb, url-fetch/zipbomb): Within the gexp,
import (guix build utils) for 'invoke'.
* guix/gexp.scm (<scheme-file>)[splice?]: New field.
(scheme-file): Add #:splice? and pass it to '%scheme-file'.
(scheme-file-compiler): Pass SPLICE? to 'gexp->file'.
(gexp->file): Add #:splice? and honor it.
* tests/gexp.scm ("gexp->file + #:splice?"): New test.
("gexp->derivation & with-imported-module & computed module"): Use
#:splice? #t.
With substitution enabled we would end up downloading 10+ MiB of source
that's already available locally on disk.
* guix/self.scm (imported-files): Pass #:options to 'computed-file'.
This reduces the closure of (guix discovery) from 28 to 8 modules.
* guix/discovery.scm (scheme-files): Use 'format' instead of 'warning'.
(scheme-modules): Add #:warn parameter. Use it instead of
'warn-about-load-error'.
(fold-modules): Add #:warn and pass it to 'scheme-modules'.
(all-modules): Likewise.
* gnu/bootloader.scm (bootloader-modules): Pass #:warn to 'all-modules'.
* gnu/packages.scm (fold-packages): Likewise.
* gnu/services.scm (all-service-modules): Likewise.
* guix/upstream.scm (importer-modules): Likewise.
* guix/build/union.scm (warn-about-collision): New procedure.
(union-build): Add #:resolve-collision.
[resolve-collisions]: Call it.
* tests/union.scm ("union-build collision first & last"): New test.
* guix/git.scm (repository->head-sha1, copy-to-store): Remove.
(switch-to-ref): Return the OID of OBJ.
(update-cached-checkout): New procedure, with code from
'latest-repository-commit'.
(latest-repository-commit): Use it.
* guix/gexp.scm (compiled-modules)[build]: Add 'processed' parameter to
'process-entry' and 'process-directory'. Print a message before each
'compile-file' call.
* gnu/packages/rust.scm (rust-bootstrap): Freeze bootstrap version to 1.22.1.
Reorganize bootstrap binaries to match new "rust" package structure with two
ouputs "out" with Rust compiler and "cargo" with Cargo package manager.
Replace all "system*" by "invoke".
(rust-1.23): Rename "rustc" to "rust". Update sha256 for tarball. Add cargo
related dependencies. Install "cargo" as separate "rust" output. Remove
substitutes for parts that were fixed in "rustc" source code. Install
documentation to separate "doc" output. Update configuration according to
changes in "rustc" source code. Replace all "system*" by "invoke".
(rust): Create package for 1.24.1 rust release based on rust-1.23 release.
* guix/build-system/cargo.scm (default-rust): Replace "default-cargo" and
"default-rustc" functions with "default-rust" function.
(cargo-build-system): Take only one package as "rust" source. Use "rustc" of
default output of "rust" package, use "cargo" as "cargo" output of "rust"
package.
This was suggested on several occasions, notably
<https://bugs.gnu.org/24544>.
* gnu/packages/ld-wrapper.in (%allow-impurities?): Default to #t and
parse the value of 'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'.
* guix/build/gnu-build-system.scm (set-paths): Set
'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'.
* guix/scripts/environment.scm (options/resolve-packages): When loading
manifest files, use the same module environment as in "guix package".
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
Previously 'guix build --log-file' would print a backtrace upon X.509
certificate verification errors.
* guix/scripts/build.scm (log-url): Catch 'tls-certificate-error' in
addition to 'getaddrinfo-error'.
* gnu/system/vm.scm (system-docker-image): New procedure.
* guix/scripts/system.scm (system-derivation-for-action): Add a case for
docker-image, and in that case, call system-docker-image.
(show-help): Document docker-image.
(guix-system): Parse arguments for docker-image.
* doc/guix.texi (Invoking guix system): Document "guix system
docker-image".
* gnu/system/examples/docker-image.tmpl: New file.
* guix/docker.scm (build-docker-image): Rename "path" argument to
"prefix" to reflect the fact that it is used as a prefix for the
symlink targets. Add the "paths" argument, and remove the "closure"
argument, since it is now redundant. Add a "transformations"
argument.
* guix/scripts/pack.scm (docker-image): Read the profile's reference
graph and provide its paths to build-docker-image via the new "paths"
argument.
* guix/scripts/pack.scm (bootstrap-xz): New variable.
(%options) <--bootstrap>: New option.
(show-help): Document the new --bootstrap option.
(guix-pack): When --bootstrap is specified, use the bootstrap Guile,
tar, and xz to build the pack, and do not use any profile hooks or
locales.
* doc/guix.texi (Invoking guix pull): Document the new --bootstrap
option.
* tests/guix-pack.sh: New file.
* Makefile.am (SH_TESTS): Add guix-pack.sh.
* gnu/packages/package-management.scm (guix) <inputs>: Add util-linux.
Suggested by Mark H Weaver <mhw@netris.org>.
* guix/build/gnu-build-system.scm (dump-file-contents): New procedure.
(%test-suite-log-regexp): New variable.
(check): Add #:test-suite-log-regexp. Catch 'invoke-error?' and call
'dump-file-contents' upon error.
* guix/glob.scm (wildcard-indices): Remove.
(parse-bracket): New procedure.
(compile-glob-pattern): Rewrite. Support square brackets for sets and
ranges.
(glob-match?): Support sets and ranges.
* tests/glob.scm (test-compile-glob-pattern)
(test-glob-match): New macros.
Use them to rewrite the existing tests, and add new tests.
Fixes <https://bugs.gnu.org/30836>.
Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>.
* guix/import/elpa.scm (elpa-package->sexp): Add LICENSE parameter and
honor it.
(elpa->guix-package): Pass 'license:gpl3+ only when REPO is 'gnu.
Fixes <https://bugs.gnu.org/30716>.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.
* guix/git.scm (switch-to-ref): When REF is a commit, check the length
of COMMIT and use 'object-lookup-prefix' if available.
This is a followup to commit 9a87649c86.
* guix/build/gnu-build-system.scm (strip)[strip-dir]: If an invoke error
occurs, issue a warning and continue to the next file. This restores the
tolerance of stripping errors prior to commit 9a87649.
This is a followup to commit 5003aeaf2560d6ddebcf980a94785fba77e00f34.
* guix/packages.scm (patch-and-repack): For the snippet, generate a single
boolean expression for 'unless', instead of the list of expressions which had
previously been spliced into an 'and' form (prior to commit 5003aea).
* guix/build-system/meson.scm (lower): Remove DEFAULT-PATCHELF from inputs
on armhf.
(meson-build): Ignore the 'fix-runpath' phase when building for arm systems.
The (ice-9 popen) module should not be added to the imported-modules here,
because that depends on the Guile that is used on the host side.
* guix/build-system/minify.scm (%minify-build-system-modules): Remove import
of (ice-9 popen).
* guix/hash.scm (GCRY_MD_SHA1): New macro.
(bytevector-hash): New procedure.
(sha256): Express in terms of 'bytevector-hash'.
(sha1): New procedure.
* tests/hash.scm ("sha1, empty", "sha1, hello"): New tests.
The previous method would mess up with @example formatting, for
instance.
* guix/ui.scm (display-hint): Parameterize '%text-width' instead of
using 'fill-paragraph'.
Previously, if ~/.cache was not write-accessible, 'guix' would exit with
code 1 without printing any message. That was because the 'make-stack'
call would fail since the exception (a 'system-error) came from
'compile-file', which was called at a point where TAG wasn't installed
yet. Secondly, to mimick auto-compilation behavior, we just swallow
'system-error raised by 'compile-file'.
Reported by Clément Lassieur.
* guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of
TAG. Catch 'system-error around it and ignore it.
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/configuration.scm (serialize-configuration,
serialize-maybe-stem, serialize-package): Return strings or string-valued
gexps (these procedures were only used for their side-effects).
* gnu/services/messaging.scm (serialize-field, serialize-field-list,
enclose-quotes, serialize-raw-content, serialize-ssl-configuration,
serialize-virtualhost-configuration-list,
serialize-int-component-configuration-list,
serialize-ext-component-configuration-list,
serialize-virtualhost-configuration, serialize-int-component-configuration,
serialize-ext-component-configuration, serialize-prosody-configuration):
Return strings or string-valued gexps and stop printing.
(prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with
MIXED-TEXT-FILE instead of using its output with PLAIN-FILE.
(serialize-non-negative-integer, serialize-non-negative-integer-list): Convert
numbers to strings.
(file-object?, serialize-file-object, file-object-list?,
serialize-file-object-list): New procedures.
(ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths,
groups-file]: Replace FILE-NAME with FILE-OBJECT.
* guix/gexp.scm (file-like?): New exported procedure.
* guix/scripts/system.scm (check-mapped-devices): Take an OS instead of
a list of <mapped-device>. Pass #:needed-for-boot? and #:initrd-modules
to CHECK.
(check-initrd-modules): New procedure.
(perform-action): Move 'check-mapped-devices' call first. Add call to
'check-initrd-modules'.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): New
procedure.
(check-luks-device): Add #:initrd-modules and #:needed-for-boot?. Use
them to call 'check-device-initrd-modules'.
This change allows overriding the home directory of all filesystem mappings to
help hide the identity of the calling user in a container.
* doc/guix.texi (Invoking guix environment)[--container]: Mention --user.
[--user]: Add item.
* guix/scripts/environment.scm (show-help): Add --user.
(%options): Add --user.
(launch-environment/container) Add 'user' parameter. Update doc. Override
'user-mappings' using 'override-user-mappings'. Consider override for chdir.
(mock-passwd, user-override-home, overrid-euser-dir): New procedures.
(guix-environment): Disallow --user without --container. Provide user to
'launch-environment/container'.
* tests/guix-environment.sh: Add user test.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This change is motivated by attempts to run programs (like GNU IceCat) within
containers. The 'fontconfig' program, for example, is configured explicitly
to check ~/.guix-profile for additional fonts.
There were no existing container tests in 'tests/guix-environment.sh', but I
added one anyway for this change.
* doc/guix.texi (Invoking guix environment): Add '--link-profile'.
* guix/scripts/environment.scm (show-help): Add '--link-profile'.
(%options): Add 'link-profile' as '#\P', assigned to 'link-profile?'.
(link-environment): New procedure.
(launch-environment/container): Use it when 'link-profile?'.
[link-profile?]: New parameter.
(guix-environment): Leave when '--link-prof' but not '--container'. Add
'#:link-profile?' argument to 'launch-environment/container' application.
* tests/guix-environment-container.sh: New '--link-profile' test.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes <https://bugs.gnu.org/30641>.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.
* guix/import/cpan.scm (cpan-version): Drop the "v" prefix when it is
there.
Fixes <https://bugs.gnu.org/30569>.
Reported by Andreas Enge <andreas@enge.fr>.
* guix/profiles.scm (manifest-add): Don't append ENTRIES as is.
Instead, cons each element of ENTRIES as we fold over it.
Remove unneeded ellispes in 'match' patterns.
* guix/build-system/trivial.scm (lower): Add #:allowed-references and
keep it in the 'arguments' field.
(trivial-build): Add #:allowed-references. Add
'canonicalize-reference'. Pass #:allowed-references to
'build-expression->derivation'.
(trivial-cross-build): Likewise.
* tests/packages.scm ("trivial with #:allowed-references"): New test.
Reported by <pkill9@runbox.com>.
Fixes <https://bugs.gnu.org/30470>.
* guix/import/utils.scm (alist->package): Check whether 'license' is
false and set the 'license' field to #f in this case.
* tests/import-utils.scm ("alist->package with false license"): New
test.
This is a temporary workaround for <https://bugs.gnu.org/30116>, where
'substitute*' throws on files containing NUL characters.
* guix/build/emacs-build-system.scm (patch-el-files): Filter out elisp files
that contain NUL characters.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* guix/build/emacs-build-system.scm (%standard-phases): Reinstate the check
phase from the gnu-build-system.
* guix/build-system/emacs.scm (emacs-build)[tests?]: But do not enable it by default.
[parallel-tests?]: Add argument.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This generalizes the mechanism by which the Emacs dependencies are made visible,
so that any build phase can make use of them.
* guix/build/emacs-build-system.scm (%legacy-install-suffix): New variable.
(%install-suffix): Redefine in terms of %legacy-install-suffix.
(set-emacs-load-path): Add new phase used for dependency resolution.
(build): Remove ad-hoc dependency discovery mechanism.
(emacs-input->el-directory): Add new procedure.
(emacs-inputs-el-directories): Use it.
(package-name-version->elpa-name-version): Fix typo.
(%standard-phases): Include the new `set-emacs-load-path' phase. Refactor to
make the ordering of the phases clearer.
* guix/build/emacs-utils.scm (emacs-byte-compile-directory): Remove the
optional `dependency-dirs' argument, which is now obsoleted by the
`set-emacs-load-path' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes <https://bugs.gnu.org/30184>.
Regression introduced in 297e04d660.
Reported by Christopher Baines <mail@cbaines.net>.
* guix/scripts/publish.scm (nar-response-port): Add 'compression'
parameter and honor it.
(http-write): Get 'x-nar-compression' from the initial RESPONSE.
Suggested by atw on #guix.
* gnu/services/shepherd.scm (shepherd-service-file): Use 'scheme-file'
instead of 'gexp->file'.
(shepherd-configuration-file): Likewise, and adjust to non-monadic
style.
(shepherd-boot-gexp): Adjust accordingly.
* guix/scripts/system.scm (upgrade-shepherd-services): Use
'lower-object' in addition to 'shepherd-service-file'.
Fixes <https://bugs.gnu.org/30155>.
The effect can be seen in the package graph produced by:
guix graph -e '(@@ (gnu packages commencement) static-bash-for-glibc)'
This reduces the number of "duplicate" nodes in this graph, i.e.,
distinct package objects that correspond to the same derivation (objects
that are not 'eq?' but semantically equal.)
* gnu/packages/commencement.scm (linux-libre-headers-boot0): Make an
'mlambda' instead of a 'lambda'.
(hurd-core-headers-boot0): Ditto.
Mitigates <https://bugs.gnu.org/29881>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.
* guix/ui.scm (load*): Unset '%fresh-auto-compile' only on Guile 2.2.3.
Previously we were looking at the load of the past 5 minutes, which
means that, after a build, we could end up waiting for 5 minutes for
that metric to be low enough.
* guix/scripts/offload.scm (machine-load): Compute RAW based on ONE, not
FIVE.
Wrap files in bin/ and sbin/ with the location of the gem itself and the
location of any other gems in use (GEM_PATH). This ensures that the bin files
will run with the right environment when executed.
It does however mean that native-inputs will also get wrapped up in any
binaries, which is not good, as it increases the size of the closure, and
risks this code being used at runtime.
* guix/build/ruby-build-system.scm (wrap): New procedure.
(%standard-phases): Add the wrap phase.
A modified copy of wrap-program from (guix build utils). The wrap-program
procedure doesn't work well for Ruby scripts, as it breaks using the -S flag
with ruby to execute the script, as when -S is passed to ruby, it expects the
script on the PATH to use ruby in the shebang, and not bash.
Therefore, to wrap the program, but keep the shebang as ruby, wrap it with a
ruby script instead.
wrap-ruby-program uses .real/foo rather than .foo-real, as this might be
neater. This procedure also includes a call to Gem.clear_paths to make it
possible to set the GEM_PATH through this method, and for it to take effect.
* gnu/build/ruby-build-system.scm (wrap-ruby-program): New procedure.
* guix/build/ruby-build-system.scm (install): Install gems to the vendor
directory, rather than the GEM_HOME. The vendor directory does not include
the version of ruby used to install the gem in the path, which makes it
easier to add it to the GEM_PATH for all versions of ruby to use.
(gem-home): Remove procedure.
* gnu/packages/ruby.scm (ruby, ruby-2.1)[native-search-paths]: Switch to
lib/ruby/vendor_ruby.
(ruby-1.8)[native-search-paths]: Remove native-search-paths.
(gem-directory): Remove procedure.
(ruby-ansi, ruby-ae)[arguments]: Remove use of gem-directory.
(ruby-metaclass, ruby-instantiator, ruby-introspection, ruby-mocha,
ruby-nokogiri, ruby-minitest-tu-shim, ruby-redcloth)[arguments]: Remove use
of gem-home.
(ruby-git, ruby-httpclient)[arguments]: Remove use of GEM_HOME.
* gnu/packages/databases.scm (es-dump-restore)[arguments]: Remove use of
GEM_HOME.
This mostly reverts 17af5d51de.
Suggested by Andy Wingo <wingo@igalia.com>.
* guix/ssh.scm (remote-daemon-channel)[redirect]: Remove 'read!' FFI
hack. Use buffered ports.
This fixes a regression in 'retrieve-files*' introduced in
896fec476f, whereby (guix scripts offload)
would not read the initial sexp now sent by the remote host via
'store-export-channel'. This would effectively prevent file retrieval
entirely when offloading.
* guix/ssh.scm (retrieve-files*): New procedure, like former
'retrieve-files' but with an extra #:import parameter.
(retrieve-files): Rewrite in terms of 'retrieve-files*'.
(file-retrieval-port): Make private.
* guix/scripts/offload.scm (transfer-and-offload): Pass #:import to
'retrieve-files*'.
(retrieve-files*): Remove.
Previously the redirect code could end up exiting prematurely because of
an uninteresting "exceptional condition" on the socket (info "(libc)
Waiting for I/O").
* guix/ssh.scm (remote-daemon-channel): Pass the empty list as the third
argument to 'select'. It was a mistake to pass a non-empty list there
in the first place.
Previously 'process-stderr' would always pass a bytevector of MAX-LEN to
then daemon in the %stderr-read case (i.e., 'import-paths'), instead of
LEN (where LEN <= MAX-LEN).
In practice the extra bytes didn't cause a protocol violation or
anything because they happen at the end of the stream, which typically
contains the canonical sexp of the signature, and the extra zeros were
just ignored.
* guix/serialization.scm (write-bytevector): Add optional 'l' parameter
and honor it.
* guix/store.scm (process-stderr): Pass LEN to 'write-bytevector'.
This works around <https://bugs.gnu.org/30066> and noticeably improves
performance when using GUIX_DAEMON_SOCKET=ssh://HOST (the redirect code
was transferring data to guix-daemon one byte at a time!).
* guix/ssh.scm (remote-daemon-channel)[redirect]: Define 'read!' and use
it instead of 'get-bytevector-some'.
This was harmless but non-compliant and unnecessary.
* guix/scripts/publish.scm <top level>: Rename "Guix-Nar-Compression" to
"X-Nar-Compression" as should have always been.
(render-nar, nar-response-port): Adjust accordingly.
(strip-headers): New procedure.
(sans-content-length, with-content-length): Use it.
Reported by Fis Trivial <ybbs.daans@hotmail.com>.
Fixes <https://bugs.gnu.org/28987>.
* guix/import/crate.scm (crate-fetch): Check whether the "license" info
is present.
This adjusts the workaround for <http://bugs.gnu.org/21093> so that it's
not limited to a single content-type.
* guix/scripts/publish.scm (render-nar/cached): Add the 'x-raw-file'
header on the response.
(render-content-addressed-file): Likewise.
(with-content-length): Remove the 'x-raw-file' header.
(http-write): Instead of dispatching on 'application/octet-stream',
check whether 'x-raw-file' is set to determine whether to spawn a
thread.
'guix copy --from' now reports messages much more useful than "failed to
retrieve files".
* guix/ssh.scm (store-export-channel)[export]: Wrap 'use-modules' in
'catch' and 'with-store' in 'guard'. Check for invalid items. Write a
status sexp on stdout.
(raise-error): New macro.
(retrieve-files): Read the initial status sexp and report errors
accordingly.
This saves 18 bytes on each 404 narinfo response.
* guix/scripts/publish.scm (render-narinfo): Pass #:phrase to
'not-found'.
(render-narinfo/cached): Likewise.
* guix/scripts/build.scm (numeric-extension?, tarball-base-name): New
procedures, formerly in 'package-with-source'.
(transform-package-source)[new-sources]: Look for '=' in URI. Each
element of the list of now a (PKG VERSION SOURCE) tuple.
Pass VERSION to 'package-with-source'.
(package-with-source): Add 'version' parameter and honor it.
* tests/scripts-build.scm ("options->transformation, with-source, PKG=URI")
("options->transformation, with-source, PKG@VER=URI"): New tests.
* doc/guix.texi (Package Transformation Options): Document the new
forms.
This is a followup to 614fffe427, which
broke cross-compilation to i686-w64-mingw32.
* guix/build-system/gnu.scm (standard-cross-packages): Add
"cross-libc:static" only when LIBC has a "static" output.
Fixes a regression whereby the host libc.a would be missing when
cross-compiling.
This is a followup to commit 6dff905e51.
* guix/build-system/gnu.scm (standard-cross-packages): Add the
"cross-libc:static".
This would crash 'guix refresh -u' with source URLs ending in
"…/v1.2.3".
* guix/upstream.scm (package-update): Be stricter when determining
ARCHIVE-TYPE.
Fixes <https://bugs.gnu.org/29761>.
Reported by Martin Castillo <castilma@uni-bremen.de>.
* guix/scripts/gc.scm (argument->verify-options): New procedure.
(%options) ["verify"]: Adjust to use it.
* tests/guix-gc.sh: Add test.
Fixes 'guix pull'.
Reported by ofosos on #guix.
* guix/man-db.scm: Use 'module-autoload!' instead of 'module-use!'.
so that (gdbm) is not loaded until we need it.
Fixes <https://bugs.gnu.org/29654>.
Reported by Ruud van Asseldonk <dev+guix@veniogames.com>.
This also speeds up database creation compared to "man-db
--create" (less than half the time, on a warm cache, for 19k pages.)
* guix/man-db.scm: New file.
* Makefile.am (MODULES_NOT_COMPILED): Add it.
* guix/profiles.scm (manual-database): Rewrite to use (guix man-db).
* guix/scripts/offload.scm (check-machine-status): New procedure.
(guix-offload): Call it when the argument is "status".
* doc/guix.texi (Daemon Offload Setup): Document it.
* guix/scripts/system.scm (show-help): Add expression option.
(%options): Ditto.
(guix-system): Allow commands taking a file as an argument to use an
expression instead.
(process-action): Read operating-system from expression or file.
* doc/guix.texi (Invoking guix system): Introduce the expression option.
* gnu/bootloader/extlinux.scm (install-extlinux): Factorize bootloader
writing in a new procedure write-file-on-device defined in (gnu build
bootloader).
* gnu/build/bootloader.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
* gnu/system/vm.scm (qemu-img): Adapt to import and use (gnu build bootloader)
module during derivation building.
* gnu/scripts/system.scm (bootloader-installer-derivation): Ditto.
This reduces max RSS from 1.3G to 1.0G.
* guix/derivations.scm (invalidate-derivation-caches!): New procedure.
* build-aux/hydra/gnu-system.scm (hydra-jobs): Use it. Add 'format'
call.
This has little or no run-time impact and slightly reduces the memory
footprint.
* guix/derivations.scm (derivation-hash): Replace 'mlambda' with
'lambda'.
* guix/memoization.scm (<cache>): New record type.
(define-lookup-procedure, define-update-procedure): New macros.
(cache-ref, cacheq-ref, cache-set!, cacheq-set!): New procedures.
(cached/mv, cachedq/mv, cached, cachedq): Use them instead of 'hash-ref'
and 'hash-set!'.
(%make-hash-table*): When 'profiled?' returns true, return a <cache>
object.
(define-cache-procedure): Adjust to show cache lookups and hits.
* guix/memoization.scm (%memoization-tables): New variable.
(%make-hash-table*, show-memoization-tables): New procedures.
(make-hash-table*): New macro.
Add top-level call to 'register-profiling-hook!'.
(memoize): Adjust to pass the resulting procedure to
'make-hash-table*'.
(%mlambda): Likewise.
Fixes <https://bugs.gnu.org/29255>.
Reported by Ben Sturmfels <ben@sturm.com.au>.
* guix/ui.scm (display-collision-resolution-hint): New procedure.
(call-with-error-handling): Call it upon '&profile-collistion-error'.
* guix/scripts/lint.scm (check-vulnerabilities): Also check for CVEs
listed as mitigated in the package properties.
* tests/lint.scm ("cve: known safe from vulnerability"): New test.
'package-grafts' returns a list of potentially applicable grafts, which
'cumulative-grafts' then narrows by looking at store item references and
determining the subset of the grafts that's actually applicable.
Until now, 'package-grafts' would traverse native inputs and would thus
return a large superset of the applicable grafts, since native inputs
are not in the reference graph by definition. This patch fixes that by
having 'package-grafts' ignore entirely native inputs from the
dependency graph.
* guix/packages.scm (fold-bag-dependencies)[bag-direct-inputs*]: Add
special case for libc.
* guix/packages.scm (bag-grafts)[native-grafts, target-grafts]: Remove.
[grafts]: New procedure.
Use it.
* tests/packages.scm ("package-grafts, grafts of native inputs
ignored"): New test.
Previously recursive calls to 'loop' would always consider all the bag
inputs rather than those corresponding to NATIVE?.
* guix/packages.scm (fold-bag-dependencies)[bag-direct-inputs*]: New
procedure. Use it both in the 'match' expression and in its body.
This is a followup to 2815fca142.
* guix/profiles.scm (profile-derivation)[builder]: Remove
'debug-disable' call, which was ineffective.
Pass #:env-vars to 'gexp->derivation'.
This fixes a regression introduced in
2f60084f77, whereby the profile derivation
would fail to run on Guile 2.0 (as is the case with "guix package
--bootstrap").
Reported by Christopher Baines.
* guix/profiles.scm (profile-derivation)[builder]: Use _IO* but add
'debug-disable' call.
Previously the "manual-database" derivation would always import the
host's srfi-{19,26}.scm files in the build side. In practice this means
that different users could get different manual-database.drv depending
on the Guile version they're using in the host.
For example, the (gnu tests install) tests would fail if the host was
running Guile 2.2.3 because the guest is running 2.2.2, and thus has
different srfi-{19,26}.scm files. The manual-database.drv would need to
be built from source, which would fail because prerequisites were
missing.
Reported by Mathieu Othacehe <m.othacehe@gmail.com>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=29409#96>.
* guix/profiles.scm (manual-database): Do not pass #:modules to
'gexp->derivation'. Wrap 'build' gexp in 'with-imported-modules' form.
* guix/scripts/offload.scm (build-machines): Comment out
'(set! %fresh-auto-compile #t)' since with Guile 2.2.3 it could lead to
an actual rebuild of everything that gets loaded from there on. See
<https://bugs.gnu.org/29226>.
* guix/ui.scm (load*): Likewise.
Until now it would print the name of each store item being copied, which
was verbose and unhelpful.
* guix/scripts/system.scm (copy-closure): Use 'progress-reporter/bar'
and 'call-with-progress-reporter'.
(guix-system): Parameterize 'current-terminal-columns'.
* guix/scripts/system.scm (copy-item): Add 'references' argument and
remove 'references*' call. Turn into a non-monadic procedure.
(copy-closure): Remove initial call to 'references*'. Only pass ITEM to
'topologically-sorted*' since that's equivalent. Compute the list of
references corresponding to TO-COPY and pass it to 'copy-item'.
Previously things returned by 'program-file', such as %MODPROBE-WRAPPER
in (gnu services), would refer to 'guile-final'. This would introduce
'guile-final' in the system closure, which is otherwise absent. By
referring to 'guile-2.2' we remove that extra Guile.
* guix/gexp.scm (default-guile): Refer to GUILE-2.2 instead of
GUILE-FINAL.
This avoids repeated deprecation messages, particularly while running
'guix system build' or similar.
* guix/gexp.scm (gexp->derivation): Add #:deprecation-warnings. Pass it
to 'compiled-modules'.
(compiled-modules): Add #:deprecation-warnings and honor it.
* doc/guix.texi (G-Expressions): Update 'gexp->derivation'
documentation.
* guix/packages.scm (patch-and-repack): Pass #:deprecation-warnings #t.
Reported at <https://bugs.gnu.org/27943>
by Danny Milosavljevic <dannym@scratchpost.org>.
* guix/scripts/lint.scm (%distro-directory): New variable.
(check-patch-file-names): Add check for the file name length.
* tests/lint.scm ("patches: file name too long"): New test.
Fixes <https://bugs.gnu.org/25020>.
Reported by Hartmut Goebel <h.goebel@crazy-compilers.com>.
* guix/gnu-maintenance.scm (latest-ftp-release)[contains-digit?]: Remove.
Relax test as to whether to recurse into subdirectories.
Fixes <https://bugs.gnu.org/29358>.
Reported by Marius Bakke <mbakke@fastmail.com>.
* guix/ui.scm (known-variable-definition): Add 'visited' set to guard
against cycles on 2.0.
This reverts commit 5f93d97005.
'guix pull' would fail because (guix self) needs 'scheme-files'
from (guix discovery), which was not exported until now.
This mitigates <https://bugs.gnu.org/27284>.
* guix/self.scm: New file.
* Makefile.am (MODULES): Add it.
* build-aux/build-self.scm (libgcrypt, zlib, gzip, bzip2, xz)
(false-if-wrong-guile, package-for-current-guile, guile-json)
(guile-ssh, guile-git, guile-bytestructures): Remove.
(build): Rewrite to simply delegate to 'compiled-guix'.
* gnu/packages.scm (%distro-root-directory): Rewrite to try different
directories.
* guix/discovery.scm (guix): Export 'scheme-files'.
* guix/scripts/pull.scm (build-and-install): Split into...
(install-latest): ... this. New procedure. And...
(build-and-install): ... this, which now takes a monadic value argument.
(indirect-root-added): Remove.
(guix-pull): Call 'add-indirect-root'. Call 'build-from-source' and
pass the result to 'build-and-install'.
This makes 'latest-repository-commit' significantly more efficient and
reduces disk usage in the store.
* guix/git.scm (copy-to-store)[dot-git?]: New procedure.
Pass it as the #:select? argument to 'add-to-store'.
Fixes <https://bugs.gnu.org/29335>.
* guix/zlib.scm (close-procedure): Remove.
(make-gzip-input-port): Do (dup (fileno port)) to get a file descriptor
for 'gzdopen'. Close PORT before returning. Use 'gzclose' as the
'close' procedure of the returned port.
(make-gzip-output-port): Likewise.
* guix/workers.scm (worker-thunk): Add (const #f) as the 'catch'
handler, and move previous handler as pre-unwind handler. Protect
against 'make-stack' returning #f.
Fixes <https://bugs.gnu.org/28779>.
Reported by Eric Bavier <bavier@cray.com>.
* guix/workers.scm (<pool>)[busy]: New field.
(worker-thunk): Add #:idle and #:busy and use them.
(make-pool): Pass #:busy and #:idle to 'worker-thunk'. Pass a 'busy'
value to '%make-pool'.
* guix/workers.scm (pool-idle?): Check whether 'pool-busy' returns zero
and adjust docstring.
That way CVE fetching benefits from 'If-Modified-Since' handling.
* guix/http-client.scm (http-fetch/cached): Add #:write-cache and
#:cache-miss parameters and honor them.
* guix/cve.scm (%current-year-ttl, %past-year-ttl): Reduce.
(call-with-cve-port): Remove.
(write-cache): New procedure.
(fetch-vulnerabilities): Rewrite in terms of 'http-fetch/cached'.
This is another instance of <https://bugs.gnu.org/22966>.
The Microsoft-IIS/7.5 server at static.nvd.nist.gov would sometimes hang
when receiving our requests byte by byte.
* guix/build/download.scm (tls-wrap) [!guile-2.0]: Add 'setvbuf' call.
This ensures the timeout applies when connecting to the port returned by
PASV.
* guix/ftp-client.scm (ftp-list): Add #:timeout parameter. Use
'connect*' instead of 'connect' and pass TIMEOUT.
(ftp-retr): Likewise.
* guix/build/download.scm (ftp-fetch): Pass TIMEOUT to 'ftp-retr'.
Suggested by Dave Love <fx@gnu.org>.
* guix/build-system/gnu.scm (%license-file-regexp): New variable.
(gnu-build): Add #:license-file-regexp and use it.
(gnu-cross-build): Likewise.
* guix/build/gnu-build-system.scm (%license-file-regexp): New variable.
(install-license-files): New procedure.
(%standard-phases): Add it.
* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL.
* guix/import/cran.scm (latest-bioconductor-release, fetch-description):
Adjust because bioconductor-uri now returns a list.
* guix/import/cran.scm (%bioconductor-version,
%bioconductor-packages-list-url): New variables.
(bioconductor-packages-list, latest-bioconductor-package-version): New
procedures.
Suggested by Marius Bakke <mbakke@fastmail.com>
in <https://bugs.gnu.org/29177>.
* guix/scripts/refresh.scm (all-packages): Pass #:select? to
'fold-packages'.
Fixes <https://bugs.gnu.org/29091>.
Reported by Eric Bavier <bavier@cray.com>.
* guix/build/compile.scm (relative-file): New procedure.
(load-files): Use it before calling 'file-name->module-name'.
(compile-files): Likewise before calling 'scm->go'.
* guix/build/pull.scm (build-guix): Remove 'with-directory-excursion'
and file name hack from ce33c3af76.
Pass OUT to 'all-scheme-files'.
* guix/download.scm (%mirrors)[cpan]: Update the list of CPAN mirrors (of
which several are dead) with a more-or-less geographically diverse selection.
This is most often the need for perl module dependencies.
* guix/import/cpan.scm (cpan-module->sexp): 'inputs -> 'propagated-inputs.
* tests/cpan.scm ("cpan->guix-package"): Adjust accordingly.
* guix/import/elpa.scm (elpa-fetch-archive): Use 'http-fetch/cached'
directly instead of 'call-with-downloaded-file'. This ensures we don't
just abort when networking access is lacking, which is required to allow
'guix refresh -c refresh' to proceed.
* guix/scripts/lint.scm (call-with-networking-fail-safe): New procedure.
(with-networking-fail-safe): New macro.
(current-vulnerabilities*): Rewrite in terms of 'with-networking-fail-safe'.
* guix/scripts/challenge.scm (summarize-report-list): New procedure.
(guix-challenge): Use it.
* doc/guix.texi (Invoking guix challenge): Adjust command output in
example.
Fixes <https://bugs.gnu.org/28731>.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.
* guix/scripts/substitute.scm (at-most): New procedure.
(http-multiple-get): Use it to send at most 1000 requests at once.
Marius Bakke