Commit Graph

4410 Commits

Author SHA1 Message Date
Ricardo Wurmus 6e377b8893
import/utils: beautify-description: Recognize more fragments.
* guix/import/utils.scm (beautify-description): Handle additional common
initial sentence fragments in descriptions.
2019-09-14 00:37:47 +02:00
Efraim Flashner 3af85f832d
build-system/cargo: Remove unused function.
* guix/build/cargo-build-system.scm (touch): Remove it.
2019-09-13 15:20:27 +03:00
Efraim Flashner 43ffa11fdc
build-system/cargo: Use 'strip-store-file-name'.
This is a follow-up to f58b2f38e4.

* guix/build/cargo-build-system.scm (configure): Use bespoke
'strip-store-file-name' function.
2019-09-13 15:20:16 +03:00
Ludovic Courtès 5ccec77176
file-systems: Add /var/run/nscd to '%network-file-mappings'.
This allows containers created by "guix environment -CN" or by
"guix system container -N" to talk to the host nscd.

* gnu/system/file-systems.scm (%network-file-mappings): Add
"/var/run/nscd".
* gnu/build/shepherd.scm (default-mounts)[nscd-socket]: Remove.
* gnu/system/linux-container.scm (container-script)[nscd-run-directory]
[nscd-mapping, nscd-os, nscd-specs]: Remove.
[script]: Filter out from SPECS bind-mounts where the device does not
exist.
* guix/scripts/environment.scm (launch-environment/container)
[optional-mapping->fs]: New procedure.
[mappings]: Remove %NETWORK-FILE-MAPPINGS.
[file-systems]: Add %NETWORK-FILE-MAPPINGS here, filtered through
'optional-mapping->fs'.
2019-09-12 23:07:42 +02:00
Efraim Flashner f58b2f38e4
build: cargo-build-system: Strip store hash from vendor-dir.
* guix/build/cargo-build-system.scm (configure): When copying the
sources into the vendor-dir strip off the hash before the package name.
2019-09-12 20:22:46 +03:00
Hartmut Goebel 4eb69bf0d3
import: KDE updater finds packages even in sub-directory.
Fixes <http://issues.guix.gnu.org/issue/30345> and
finally fixes <http://issues.guix.gnu.org/issue/25020>.

Formerly packages living in a path like
/stable/frameworks/5.60/portingAids/kross-5.60.0.tar.xz
have not been found.

* guix/import/kde.scm (uri->kde-path-pattern): New procedure.
  (latest-kde-release): Use pattern to search for file.
2019-09-10 19:04:06 +02:00
Hartmut Goebel d1dce0c363
upstream: Move KDE updater into a separate module.
As it was done for (guix import gnome).

* guix/import/kde.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/gnu-maintenance.scm (%kde-updater) (%kde-file-list-uri)
  (download.kde.org-files) (latest-kde-release): Remove.
2019-09-10 19:04:06 +02:00
Hartmut Goebel 33f53947aa
gnu-maintenance: KDE updater no longer relies on FTP access.
Fetch the ls-lR.bz2 file list for download.kde.org, convert it into a list of
file paths and cache the list.

* guix/gnu-maintenance.scm (%kde-file-list-uri): New variable.
  (download.kde.org-files): New procedure.
  (latest-kde-release): Change to use DOWNLOAD.KDE.ORG-FILES and search
  for files in this list.
2019-09-10 19:04:06 +02:00
Hartmut Goebel da1027a705
guix: Rename and move sans-extension to tarball-sans-extension.
* guix/gnu-maintenance.scm (sans-extension): Move and rename to ...
* guix/utils.scm (tarball-sans-extension): ... here.
2019-09-10 19:04:05 +02:00
Martin Becze fd63ecbe05
import: crate: Allow imports of a specific version.
* guix/import/crate.scm (crate->guix-package): Add optional 'version'
argument and honor it.
* guix/scripts/import/crate.scm (guix-import-crate): Assume the first
argument is a spec and destructure it with
'package-name->name+version'.  Pass both to 'crate->guix-package'.
* doc/guix.texi (Invoking guix import): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-09-10 00:34:40 +02:00
Ludovic Courtès 7c101c4c17
refresh: Distinguish between "no updater" and "failing updater".
Previously, something like "guix refresh texmacs" would report "no
updater".  Now, it reports that the 'gnu-ftp' updater failed to list
releases.

* guix/upstream.scm (lookup-updater): Use 'find' instead of 'any' to
return the <upstream-updater>.
(package-latest-release): Adjust accordingly.
* guix/scripts/refresh.scm (check-for-package-update): When
'package-latest-release' returns #f, distinguish between "no updater"
and "failing updater".
2019-09-10 00:34:40 +02:00
Ludovic Courtès 36eef80d45
packages: 'package-field-location' really catches 'system-error.
This had been wrong since forever (i.e., 2013).

* guix/packages.scm (package-field-location): Catch 'system-error, not
'system.
2019-09-10 00:34:40 +02:00
Ludovic Courtès 982a94e97e
import: github: Fix incorrect no-release case.
This is a followup to 81c3dc3224.

Since that commit, when /releases returned an empty JSON array, we would
not fall back to /tags because of the incorrect match.

* guix/import/github.scm (fetch-releases-or-tags): Match the empty
vector instead of the empty list.
2019-09-08 14:43:41 +02:00
Ludovic Courtès 2e3e5d2198
daemon: Invoke 'guix gc --list-busy' instead of 'list-runtime-roots'.
* nix/scripts/list-runtime-roots.in: Remove.
* guix/store/roots.scm (%proc-directory): New variable.
(proc-file-roots, proc-exe-roots, proc-cwd-roots)
(proc-fd-roots, proc-maps-roots, proc-environ-roots)
(referenced-files, canonicalize-store-item, busy-store-items): New
procedures, taken from 'list-runtime-roots.in'.
* nix/libstore/globals.hh (Settings)[guixProgram]: New field.
* nix/libstore/globals.cc (Settings::processEnvironment): Initialize
'guixProgram'.
* nix/libstore/gc.cc (addAdditionalRoots): Drop code related to
'NIX_ROOT_FINDER'.  Run "guix gc --list-busy".
* nix/local.mk (nodist_pkglibexec_SCRIPTS): Remove
'scripts/list-runtime-roots'.
* config-daemon.ac: Don't output nix/scripts/list-runtime-roots.
* build-aux/pre-inst-env.in: Don't set 'NIX_ROOT_FINDER'.
Set 'GUIX'.
* doc/guix.texi (Invoking guix gc): Document '--list-busy'.
* guix/scripts/gc.scm (show-help, %options): Add "--list-busy".
(guix-gc)[list-busy]: New procedure.
Handle the 'list-busy' action.
2019-09-08 11:49:24 +02:00
Ludovic Courtès 67c2db17bc
download: Pass 'http_proxy' et al. to git, hg, etc.
This allows 'git-fetch' etc. origins to honor the proxy and locale of
the daemon.

* guix/bzr-download.scm (bzr-fetch): Pass #:leaked-env-vars to
'gexp->derivation'.
* guix/cvs-download.scm (cvs-fetch): Likewise.
* guix/git-download.scm (git-fetch): Likewise.
* guix/hg-download.scm (hg-fetch): Likewise.
* guix/svn-download.scm (svn-multi-fetch): Likewise.
2019-09-05 18:33:30 +02:00
Pierre Neidhardt 01e38cc426
build-system/asdf: Add option to compress programs.
* guix/build/lisp-utils.scm (build-program): Add `compress?' key argument.
(generate-executable-for-system): Same.
(generate-executable): Same.
2019-09-05 09:56:21 +02:00
Marius Bakke 56b1977a5d
build-system/julia: Avoid module cycles.
* guix/build-system/julia.scm: Remove unused imports.
(lower)[julia]: Default to (DEFAULT-JULIA).
2019-09-05 00:20:41 +02:00
Ricardo Wurmus 458b07ebe0
build-system/julia: Fix syntax error.
* guix/build-system/julia.scm: Fix invalid module reference.
2019-09-04 23:56:24 +02:00
Julien Lepiller b2f810fe93
import: opam: Use propagated-inputs instead of inputs.
* guix/import/opam.scm (opam->guix-package): Use propagated-inputs instead of inputs.
2019-09-04 23:08:16 +02:00
Julien Lepiller d3366a8ee8
import: opam: Remove initial "v" in some version numbers.
* guix/import/opam.scm (opam-fetch): Remove initial "v" in some version numbers.
2019-09-04 23:07:55 +02:00
nixo a44a535ebe
build: Add julia-build-system.
* guix/build/julia-build-system.scm: New file.
* guix/build-system/julia.scm: New file.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document julia-build-system.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-09-04 22:17:38 +02:00
Ludovic Courtès 191668bc97
import: crate: Correct interpretation of dual-licensing strings.
* guix/import/crate.scm (%dual-license-rx): New variable.
(crate->guix-package)[string->license]: Rewrite to match it.
* tests/crate.scm (test-crate): Adjust "license" field to current
practice.
2019-09-04 13:02:27 +02:00
Ludovic Courtès 2791870d09
import: crate: Separate crates.io API from actual conversion.
This provides a clean separation between bindings to the
https://crates.io/api/v1 API and actual conversion to Guix package
sexps.

As a side-effect, it fixes things like "guix import blake2-rfc", "guix
refresh -t crates", etc.

* guix/import/crate.scm (<crate>, <crate-version>, <crate-dependency>):
New record types.
(lookup-crate, crate-version-dependencies): New procedures.
(crate-fetch): Remove.
(crate->guix-package): Rewrite to use the new API.
(latest-release): Likewise.
* guix/build-system/cargo.scm (%crate-base-url): New variable.
* tests/crate.scm (test-crate): Update accordingly.

fixlet
2019-09-04 13:02:27 +02:00
Ludovic Courtès a85a74ce6c
ci: Use (guix json) and adjust for Guile-JSON 3.x.
This is in part a followup to 81c3dc3224.

* guix/ci.scm (<build>, <checkout>, <evaluation>): Define using
'define-json-mapping'.
(json->build, json->checkout, json->evaluation): Remove.
(queued-builds, latest-builds, latest-evaluations): Pass JSON arrays
through 'vector->list' to adjust for Guile-JSON 3.x.
(evaluations-for-commit): Fix typo to really export.
2019-09-04 13:02:27 +02:00
Ludovic Courtès 76073d29e1
Add (guix json).
* guix/swh.scm (define-json-reader, define-json-mapping): Move to...
* guix/json.scm: ... here.  New file.
* Makefile.am (MODULES): Add it.
2019-09-04 13:02:27 +02:00
Ludovic Courtès 91300526b7
deploy: Add missing store options.
* guix/scripts/deploy.scm (%default-options): Add missing options such
as 'print-build-trace?', etc.
2019-09-04 13:02:27 +02:00
Ludovic Courtès 55549c7b9b
lint: Add 'archival' checker.
* guix/lint.scm (check-archival): New procedure.
(%network-dependent-checkers): Add 'archival' checker.
* tests/lint.scm ("archival: missing content")
("archival: content available")
("archival: missing revision")
("archival: revision available")
("archival: rate limit reached"): New tests.
* doc/guix.texi (Invoking guix lint): Document it.
2019-09-02 15:25:01 +02:00
Ludovic Courtès d370cc7319
swh: Make 'commit-id?' public.
* guix/swh.scm (commit-id?): Make public.
2019-09-02 15:25:01 +02:00
Ludovic Courtès ba1c1853a7
swh: Add hooks for rate limiting handling.
* guix/swh.scm (%allow-request?, %save-rate-limit-reset-time)
(%general-rate-limit-reset-time): New variables.
(request-rate-limit-reached?, update-rate-limit-reset-time!): New
procedures.
(call): Call '%allow-request?'.  Change 'swh-error' protocol to pass
METHOD in addition to URL.
* tests/swh.scm ("rate limit reached")
("%allow-request? and request-rate-limit-reached?"): New tests.
2019-09-02 15:25:01 +02:00
Ludovic Courtès 9323ab550f
tests: 'with-http-server' accepts multiple responses.
* guix/tests/http.scm (call-with-http-server): Replace 'code' and 'data'
parameters with 'responses+data'.  Compute RESPONSES as a function of
that.  Remove #:headers parameter.
[http-write]: Quit only when RESPONSES is empty.
[server-body]: Get the response and data from RESPONSES, and set it to
point to the rest.
(with-http-server): Adjust accordingly.
* tests/derivations.scm ("'download' built-in builder")
("'download' built-in builder, invalid hash")
("'download' built-in builder, not found")
("'download' built-in builder, check mode"): Adjust to new
'with-http-server' interface.
* tests/lint.scm ("home-page: 200")
("home-page: 200 but short length")
("home-page: 404", "home-page: 301, invalid"):
("home-page: 301 -> 200", "home-page: 301 -> 404")
("source: 200", "source: 200 but short length")
("source: 404", "source: 404 and 200")
("source: 301 -> 200", "source: 301 -> 404"):
("github-url", github-url): Likewise.
* tests/swh.scm (with-json-result)
("lookup-origin, not found"): Likewise.
2019-09-02 15:25:01 +02:00
Ricardo Wurmus 8786fec485
import: cran: Only use the git import with what looks like a URL.
* guix/import/cran.scm (fetch-description): Abort if the argument does not
look like a URL.
2019-09-02 14:46:04 +02:00
Ricardo Wurmus c7358ac4fc
import: cran: Retry failed git imports on Bioconductor.
* guix/import/cran.scm (cran->guix-package): Retry failed git imports on
Bioconductor.
2019-09-02 14:45:17 +02:00
Efraim Flashner 2f43e5db1c
build/cargo-build-system: Use invoke.
* guix/build/cargo-build-system.scm (crate-src?, build, check,
install): Use 'invoke'.
2019-09-02 11:07:53 +03:00
Ludovic Courtès 900e0fbcc4
lint: Gracefully handle errors from 'connect' & co.
* guix/lint.scm (call-with-networking-fail-safe): Add case for
'system-error' as typically raised by 'connect' & co.
2019-08-31 21:04:09 +02:00
Ludovic Courtès c3e59de9b1
guix system: Reinstalling the bootloader preserves extra menu entries.
Fixes <https://bugs.gnu.org/36876>.
Reported by Jesse Gibbons <jgibbons2357@gmail.com>.

Previously 'guix system delete-generations' or 'switch-generation' would
lose the extra bootloader menu entries specified in the current system's
configuration.  This fixes that.

* guix/scripts/system.scm (reinstall-bootloader): Turn PARAMS into a
single <boot-parameters>.  Adjust ENTRIES to include extra menu entries
specified in PARAMS.
2019-08-30 01:33:45 +02:00
Ludovic Courtès 7d09f2e85f
lint: formatting: Reporters return #f or a warning.
* guix/lint.scm (report-tabulations, report-trailing-white-space)
(report-long-line, report-lone-parentheses): Return #f instead
of *unspecified* when there are no warnings.
(report-formatting-issues): Use 'filter-map' instead of 'map' + 'filter'.
2019-08-30 01:33:45 +02:00
Ricardo Wurmus ad553ec4b1
import: cran: Add support for git repositories.
* guix/import/cran.scm (vcs-file?): New procedure.
(download): Support downloading from git.
(fetch-description): Add a clause for the 'git repository type.
(files-match-pattern?): New procedure.
(tarball-files-match-pattern?): Implement in terms of FILES-MATCH-PATTERN?.
(directory-needs-fortran?, directory-needs-zlib?,
directory-needs-pkg-config?): New procedures.
(needs-fortran?, needs-zlib?, needs-pkg-config?): Rename these procedures...
(tarball-needs-fortran?, tarball-needs-zlib?, tarball-needs-pkg-config?):
...to this, and use them.
(file-hash): New procedure.
(description->package): Handle the 'git repository type.
* guix/import/utils.scm (package->definition): Handle package expression
inside of a let.
* guix/scripts/import.scm (guix-import): Handle let expressions.
* doc/guix.texi (Invoking guix import): Document it.
2019-08-29 11:38:12 +02:00
Ricardo Wurmus 54ddd85220
import: cran: guix-import-cran: Use (guix import utils).
* guix/scripts/import/cran.scm (guix-import-cran): Use PACKAGE->DEFINITION
from (guix import utils) instead of custom procedure.
2019-08-29 08:06:54 +02:00
Ludovic Courtès dae950ca50
deploy: Do not quote error messages.
* guix/scripts/deploy.scm (guix-deploy): Do not quote the message.
2019-08-28 18:52:52 +02:00
Ludovic Courtès e09c7f4ae4
remote, ssh: Show the command exit status upon failure.
* guix/remote.scm (remote-pipe-for-gexp): Show the exit status in error
message.
* guix/ssh.scm (remote-inferior): Likewise.
2019-08-28 18:52:52 +02:00
Ludovic Courtès d229215051
diagnostics: Avoid highlighting complete messages.
* guix/diagnostics.scm (%highlight-argument): Don't highlight ARG if it
contains white space.
2019-08-28 18:52:52 +02:00
Ludovic Courtès 8f67a76a54
lint: Log diagnostics with 'info', not 'warning'.
* guix/scripts/lint.scm (emit-warnings): Use 'info', not 'warning'.
This removes the unhelpful "warning:" prefix that commit
3d33c93cef introduced.
2019-08-28 18:52:51 +02:00
Ludovic Courtès 8146c48632
swh: Correctly handle visits without a snapshot.
As discussed at
<https://sympa.inria.fr/sympa/arc/swh-devel/2019-08/msg00016.html>.

* guix/swh.scm (string*): New procedure.
(<visit>)[snapshot-url]: Pass 'string*' as the conversion procedure.
[status]: Pass 'string->symbol' as the conversion procedure.
(visit-snapshot): Return #f when 'visit-snapshot-url' returns #f.
(lookup-origin-revision): Filter to visits for which
'visit-snapshot-url' is true.
2019-08-28 18:52:51 +02:00
Ludovic Courtès b8815c5ec4
swh: 'swh-download' prints debugging info.
* guix/git-download.scm (git-fetch): Print a message before calling
'swh-download'.
* guix/swh.scm (swh-download): Add #:log-port.  Write debugging messages
to LOG-PORT.
2019-08-28 18:52:51 +02:00
Efraim Flashner 3762e31b6c
build/cargo-build-system: Remove 'update-cargo-lock phase.
* guix/build/cargo-build-system.scm (update-cargo-lock): Remove
procedure.
(configure): Delete Cargo.lock file if it exists.
(%standard-phases): Remove 'update-cargo-lock.
* doc/guix.texi (Build System)[cargo-build-system]: Remove references to
the 'update-cargo-lock phase.
2019-08-28 09:41:59 +03:00
Ludovic Courtès 58d5f280a3
lint: Correct use of 'with-networking-fail-safe'.
Fixes <https://bugs.gnu.org/37160>.
Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>.

* guix/lint.scm (check-for-updates): Make sure the first argument to
'with-networking-fail-safe' is the whole error message.
2019-08-28 00:27:14 +02:00
Ludovic Courtès 7979a287f8
pack: Create /tmp in Docker images.
Fixes <https://bugs.gnu.org/37161>.

* guix/scripts/pack.scm (docker-image)[build]: Add a 'directory' entry
for "/tmp" to DIRECTIVES.
* tests/pack.scm ("docker-image + localstatedir"): Test the presence of /tmp.
* gnu/tests/docker.scm (run-docker-test)["Load docker image and run
it"]: Test the presence and permission bits of "/tmp".
2019-08-27 12:20:44 +02:00
Ludovic Courtès 2b7c89f4fc
docker: Take a list of directives instead of a list of symlinks.
* guix/docker.scm (symlink-source, topmost-component): Remove.
(directive-file): New procedure.
(build-docker-image): Remove #:symlinks and add #:extra-files.
Make a sub-directory "extra" and call 'evaluate-populate-directive' for
EXTRA-FILES in that directory.
* guix/scripts/pack.scm (docker-image)[build](symlink->directives,
directives): New procedures.
Pass #:extra-files instead of #:symlinks to 'build-docker-image'.
2019-08-27 12:20:44 +02:00
Ludovic Courtès dd6976dd75
import: github: 'github-package?' uses 'package-upstream-name'.
* guix/import/github.scm (updated-github-url): Use
'package-upstream-name' instead of 'package-name'.  This allows
'github-package?' to match more packages, given an appropriate upstream
name.
2019-08-27 12:20:44 +02:00
Mark H Weaver 32e18e9b94
Merge branch 'wip-binaries' 2019-08-26 23:28:58 -04:00
David Thompson 6cef554be8
packages: Apply target triplet in bag-transitive-host-inputs.
Fixes a bug where propagated inputs that should be cross-compiled are instead
compiled for the host system.

* guix/packages.scm (bag-transitive-host-inputs): Call transitive-inputs in
  the context of the bag's target system triplet.
2019-08-26 09:40:17 -04:00
Ludovic Courtès 90c98b5a89
swh: 'swh-download' checks return value of 'vault-fetch'.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
in <https://bugs.gnu.org/36931>.

* guix/swh.scm (swh-download): Check whether 'vault-fetch' return false
before calling 'dump-port'.
2019-08-23 18:41:49 +02:00
Ludovic Courtès b908fcd8c0
pack: '-R' honors the requested output.
Fixes <https://bugs.gnu.org/36925>.
Reported by Jesse Gibbons <jgibbons2357@gmail.com>.

* guix/scripts/pack.scm (wrapped-package): Add 'output*' parameter.
[build]: Define 'input' and 'target'; use them instead of #$package and
 #$output, respectively.
(wrapped-manifest-entry): New procedure.
(map-manifest-entries): Call PROC directly.
(guix-pack): Pass WRAPPED-MANIFEST-ENTRY to 'map-manifest-entries'.
2019-08-23 18:41:49 +02:00
Mark H Weaver 888e477bf8
Revert "import: utils: Add hash-ref*."
This reverts commit 8a3b11d1eb.
2019-08-22 14:24:37 -04:00
Mark H Weaver d020821c0b
Revert "import: cpan: Adapt for the change to guile-json version 3."
This reverts commit 01ce7af25a.
2019-08-22 14:24:11 -04:00
Christopher Baines 01ce7af25a
import: cpan: Adapt for the change to guile-json version 3.
In guile-json version 3, JSON objects are represented as hash tables, rather
than alists.

* guix/import/cpan.scm (string->license): Change the match expression to match
on lists, rather than vectors.
(module->dist-name, cpan-source-url, cpan-version): Change assoc-ref to
hash-ref.
(cpan-module->sexp): Change assoc-ref to hash-ref, and assoc-ref* to
hash-ref*.
* tests/cpan.scm ("source-url-http", "source-url-https"): Convert the alist to
a hash table.
2019-08-21 18:29:30 +01:00
Christopher Baines 8a3b11d1eb
import: utils: Add hash-ref*.
With the change to guile-json version 3, JSON objects are represented as hash
tables, rather than alists. The cpan importer uses assoc-ref* on a hash table,
so add an equivalent function for hash tables.

* guix/import/utils.scm (hash-ref*): New procedure.
2019-08-21 18:29:27 +01:00
Ludovic Courtès 0ea009db9d
upstream: Gracefully handle archive type changes.
Previously, if the currently used archive type (e.g., "bz2") was
unavailable for the new version, 'guix refresh -u' would crash instead
of updating to the archive with the new type.

* guix/upstream.scm (package-update/url-fetch): When URL is #f, pick the
first of URLS; likewise for SIGNATURE-URL.
2019-08-17 23:18:11 +02:00
Ludovic Courtès 4496ea74aa
refresh: Use the standard diagnostic procedures.
* guix/scripts/refresh.scm (warn-no-updater): Use 'warning' instead of
'format'.
(update-package): Use 'info' and 'warning' instead of 'format'.
2019-08-17 23:18:11 +02:00
Ludovic Courtès 8d64ef567f
import: gnome: Update for Guile-JSON 3.x.
This is a followup to 81c3dc3224.

* guix/import/gnome.scm (jsonish->upstream-source): Use 'assoc-ref'
instead of 'hash-ref'.
(latest-gnome-release): Match a vector containing an alist, not a hash
table.  Use 'fold' instead of 'hash-fold' over RELEASES.
2019-08-17 23:18:11 +02:00
Ludovic Courtès 23ab21fa9d
derivations: Fix typo in docstring.
* guix/derivations.scm (derivation-build-plan): Fix typo in the
docstring.
2019-08-17 19:26:10 +02:00
Ludovic Courtès 268896444b
derivations: Delete duplicate inputs when computing derivation hash.
Fixes <https://bugs.gnu.org/36777>.
Reported by Carl Dong <contact@carldong.me>.

* guix/derivations.scm (derivation/masked-inputs): Call
'delete-duplicates' on INPUTS.
* tests/derivations.scm ("derivation with duplicate fixed-output inputs"):
New test.
2019-08-16 23:00:26 +02:00
Ludovic Courtès a7c714d398
channels: Add 'profile-channels'.
* guix/channels.scm (profile-channels): New procedure.
* guix/scripts/describe.scm (display-profile-info)[channels]: Define in
terms of 'profile-channels'.
2019-08-16 23:00:26 +02:00
Ricardo Wurmus 5063deab08
import: cran: Support experiment and annotation packages.
* guix/import/cran.scm (%bioconductor-packages-list-url): Replace variable...
(bioconductor-packages-list-url): ...with this procedure.
(bioconductor-packages-list): Accept optional TYPE argument.
(latest-bioconductor-package-version): Same.
(fetch-description): Determine package type and use it in calls to
LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(description->package): Pass package type to URI helper procedure; include
package type in annotation or experiment packages from Bioconducter.
2019-08-16 15:07:22 +02:00
Ricardo Wurmus c586f427b4
build-system/r: bioconductor-uri: Take optional package type.
* guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to
return annotation or experiment URLs.
2019-08-16 15:07:22 +02:00
Jakob L. Kreuze 4cc5e5204b
machine: Use 'become-command'.
* gnu/machine/ssh.scm (managed-host-remote-eval): Pass an appropriate
'become-command' to 'remote-eval'.
* guix/ssh.scm (remote-authorize-signing-key): Add optional
'become-command' argument.
All callers changed.
2019-08-16 08:47:28 -04:00
Jakob L. Kreuze ddef146b89
remote: Resolve missing 'G_'.
* guix/remote.scm: Require (guix i18n).
2019-08-16 08:45:44 -04:00
Jan Nieuwenhuizen 4f3811f6bb
guix: copy-linux-headers: Extract procedure, add headers.
* guix/build/make-bootstrap.scm (copy-linux-headers): New procedure; extract
from make-stripped-libc and add headers for Mes bootstrap.
(make-stripped-libc): Use it.
2019-08-15 14:46:03 -04:00
Jakob L. Kreuze 5f32531770
remote: Use (%daemon-socket-uri) rather than hard-coded path.
* guix/remote.scm (remote-eval): Use (%daemon-socket-uri) as the default
value of 'socket-name' rather than hard-coded path.
2019-08-15 07:43:21 -04:00
Jakob L. Kreuze 3033d59ac9
machine: Automatically authorize the coordinator's signing key.
* guix/ssh.scm (remote-authorize-signing-key): New variable.
* gnu/machine/ssh.scm (deploy-managed-host): Authorize coordinator's
signing key before any invocations of 'remote-eval'.
(deploy-managed-host): Display an error if a signing key does not exist.
* doc/guix.texi (Invoking guix deploy): Remove section describing manual
signing key authorization.
(Invoking guix deploy): Add section describing the 'authorize?' field.
2019-08-15 07:43:13 -04:00
Jakob L. Kreuze 9c70c460a0
machine: Implement 'roll-back-machine'.
* gnu/machine.scm (roll-back-machine, &deploy-error, deploy-error?)
(deploy-error-should-roll-back)
(deploy-error-captured-args): New variable.
* gnu/machine/ssh.scm (roll-back-managed-host): New variable.
* guix/scripts/deploy.scm (guix-deploy): Roll-back systems when a
deployment fails.
2019-08-15 07:43:09 -04:00
Jakob L. Kreuze 5ea7537b9a
machine: Allow non-root users to deploy.
* doc/guix.texi (Invoking guix deploy): Add section describing
prerequisites for deploying as a non-root user.
* guix/remote.scm (remote-pipe-for-gexp): New optional 'become-command'
argument.
(%remote-eval): New optional 'become-command' argument.
(remote-eval): New 'become-command' keyword argument.
* guix/ssh.scm (remote-inferior): New optional 'become-command'
argument.
(inferior-remote-eval): New optional 'become-command' argument.
(remote-authorize-signing-key): New optional 'become-command' argument.
* gnu/machine/ssh.scm (machine-become-command): New variable.
(managed-host-remote-eval): Invoke 'remote-eval' with the
'#:become-command' keyword.
(deploy-managed-host): Invoke 'remote-authorize-signing-key' with the
'#:become-command' keyword.
2019-08-15 07:43:03 -04:00
Jakob L. Kreuze 03cbd94d48
remote: Remove '--system' argument.
* gnu/services.scm (activation-script): Return a <program-file> rather
than a <scheme-file>.
* gnu/deploy.scm (guix-deploy): Remove handling for '--system'.
(show-help): Remove documentation for '--system'.
(%default-options): Remove default setting for 'system'.
2019-08-14 15:38:13 -04:00
Jakob L. Kreuze 2c8e04f136
remote: Build derivations appropriate for the remote's
* gnu/machine/ssh.scm (machine-ssh-configuration): Add 'system' field.
(managed-host-remote-eval): Pass 'system' field to 'remote-eval'.
(machine-check-building-for-appropriate-system): New variable.
(check-deployment-sanity): Add call to
'machine-check-building-for-appropriate-system'.
* doc/guix.texi (Invoking guix deploy): Describe new 'system' field.
* guix/ssh.scm (remote-system): New variable.
* guix/remote.scm (remote-eval): Use result of 'remote-system' when
lowering the G-Expression.
(remote-eval): Add 'system' keyword argument.
(trampoline): Return a <program-file> rather than a <scheme-file>.
2019-08-14 15:38:09 -04:00
Marius Bakke 36f400f616
Merge branch 'master' into staging 2019-08-08 18:14:45 +02:00
Robert Vollmert e07f765558
import: hackage: Update list of ghc-included packages.
It turns out the list in the release notes is incomplete.
This updates the list from /gnu/store/<hash>-ghc-8.4.3/lib/ghc-8.4.3.

* guix/import/hackage.scm (ghc-standard-libraries): Update list.
2019-08-07 22:05:29 -04:00
Marius Bakke 8e7f97b9ff
Merge branch 'master' into staging 2019-08-08 00:35:37 +02:00
Ricardo Wurmus 9bd1333e58
Merge remote-tracking branch 'origin/master' into wip-texlive 2019-08-07 22:26:55 +02:00
Jakob L. Kreuze 55e238f2ab
deploy: Use all machine modules when loading deployment
* guix/scripts/deploy.scm (load-source-file): Enumerate and include all
submodules of (gnu machine) when loading the provided deployment
specification.
2019-08-07 16:05:58 -04:00
Jakob L. Kreuze 5f04e9f962
reconfigure: Fix GC root installation.
Fixes <https://bugs.gnu.org/36942>.
Reported by ison <ison@airmail.cc>.

guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch
new symlink to the canonical bootloader configuration file.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-08-06 22:21:13 +02:00
Ricardo Wurmus 378d94e51b
Merge remote-tracking branch 'origin/master' into wip-texlive 2019-08-06 10:07:36 +02:00
Marius Bakke f35d313265
Merge branch 'master' into staging 2019-08-04 13:41:27 +02:00
Efraim Flashner ac6b78488f
build/cargo-build-system: Patch cargo checksums.
* guix/build/cargo-build-system.scm (generate-all-checksums): New
procedure.
(update-cargo-lock, patch-cargo-checksums): New phases.
(%standard-phases): Add 'update=cargo-lock after 'configure and
'patch-cargo-checksums after 'patch-generated-file-shebangs.
* doc/guix.texi (Build System)[cargo-build-system]: Mention how
Cargo.lock files are handled.
2019-08-04 11:53:27 +03:00
Jakob L. Kreuze 1db6f137d9
reconfigure: Reload all shepherd files when upgrading services.
Fixes <https://bugs.gnu.org/36878>.
Reported by Robert Vollmert <rob@vllmrt.net>.

* guix/scripts/system/reconfigure.scm (upgrade-shepherd-services): Load
all service files, rather than just those of services to be started.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-08-02 11:20:51 +02:00
Leo Famulari 0c3c597d2e
gnu: Update default Go compiler to Go 1.12.
* gnu/packages/golang.scm (go): Update to go-1.12.
* guix/build/go-build-system.scm (setup-go-environment): Set $GOCACHE.
2019-07-29 14:57:07 -04:00
Ludovic Courtès 2e8cabb8d6
gexp: 'program-file' honors the current system and cross-compilation target.
Fixes <https://bugs.gnu.org/36813>.
Reported by Jakob L. Kreuze <zerodaysfordays.sdf.org@sdf.org>.

* guix/gexp.scm (program-file-compiler): Pass #:system and #:target to
'gexp->script'.
(load-path-expression): Add #:system and #:target and honor them.
(gexp->script): Likewise.
* tests/gexp.scm ("program-file #:system"): New test.
* doc/guix.texi (G-Expressions): Adjust accordingly.
2019-07-26 23:50:12 +02:00
Ludovic Courtès 2cc5ec7f0d
gexp: 'compiled-modules' can cross-compile.
* guix/gexp.scm (compiled-modules): Add #:target and honor it.
2019-07-26 23:47:43 +02:00
Ludovic Courtès 548e0af4da
discovery: 'scheme-files' ignores hidden files.
* guix/discovery.scm (scheme-files)[dot-prefixed?]: New procedure.
Use it to exclude any file starting with ".".
2019-07-26 21:49:25 +02:00
Jakob L. Kreuze 5c8c8c4554
guix system: Reimplement 'reconfigure'.
* guix/scripts/system.scm (switch-to-system)
(upgrade-shepherd-services, install-bootloader): Delete variable.
(local-eval): New variable.
(install): Remove 'bootloader-installer' and 'bootcfg-file' parameters.
(install): Add 'bootloader' parameter.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-26 19:19:49 +02:00
Jakob L. Kreuze 5c793753b3
guix system: Add 'reconfigure' module.
* guix/scripts/system/reconfigure.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/scripts/system.scm (bootloader-installer-script): Export variable.
* gnu/machine/ssh.scm (switch-to-system, upgrade-shepherd-services)
(install-bootloader): Delete variable.
* gnu/machine/ssh.scm (deploy-managed-host): Rewrite procedure.
* gnu/services/herd.scm (live-service): Export variable.
* gnu/services/herd.scm (live-service-canonical-name): New variable.
* tests/services.scm (live-service): Delete variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-26 19:19:49 +02:00
Ludovic Courtès 4d04bc50d2
guix build: '--with-commit' recognizes "v[0-9]" tags.
* guix/scripts/build.scm (transform-package-source-commit)[replace]:
Special case COMMIT that starts with "v[0-9]".
2019-07-26 11:21:36 +02:00
Ludovic Courtès 10a8c2bbc6
git: 'switch-to-ref' resolves tag targets.
* guix/git.scm (switch-to-ref): In the 'tag' case, resolve the target of
the tag.
* tests/guix-build-branch.sh: Adjust test accordingly.
2019-07-26 11:21:36 +02:00
Ludovic Courtès 177fecb57c
git: <git-checkout> allows tags in its 'commit' field.
Fixes <https://bugs.gnu.org/36371>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.

* guix/git.scm (git-checkout-compiler): Pass 'tag-or-commit' to
'latest-repository-commit*'.
* doc/guix.texi (Package Transformation Options): Update '--with-commit'
documentation accordingly.
* tests/guix-build-branch.sh: Add test.
2019-07-26 11:21:36 +02:00
Ludovic Courtès c4c2449fea
git: 'update-cached-checkout' supports a 'tag-or-commit' type of ref.
* guix/git.scm (switch-to-ref)[obj]: Wrap in 'resolve' lambda.  Add
'tag-or-commit' case.
(update-cached-checkout): Document it.
2019-07-26 11:21:36 +02:00
Hartmut Goebel cbad3570db
guix: ant-build-system: Put dummy project-name into default build.xml.
Without this, ant reported error messages like
Target "tests" does not exist in the project "null".
Simple using the jar-name is a good compromise.

* guix/build/ant-build-system.scm (default-build.xml): Add attribute
  to sxml expression.
2019-07-25 10:21:45 +02:00
Hartmut Goebel a331623931
guix: ant-build-system: Use ant-task "jar" instead of executing "jar".
* guix/build/ant-build-system.scm (default-build.xml): Change XML for
  target "jar" to use ant-task "jar" instead of "exec".
2019-07-25 10:21:44 +02:00
Ludovic Courtès 81c3dc3224
maint: Switch to Guile-JSON 3.x.
Guile-JSON 3.x is incompatible with Guile-JSON 1.x, which we relied on
until now: it maps JSON dictionaries to alists (instead of hash tables),
and JSON arrays to vectors (instead of lists).  This commit is about
adjusting all the existing code to this new mapping.

* m4/guix.m4 (GUIX_CHECK_GUILE_JSON): New macro.
* configure.ac: Use it.
* doc/guix.texi (Requirements): Mention the Guile-JSON version.
* guix/git-download.scm (git-fetch)[guile-json]: Use GUILE-JSON-3.
* guix/import/cpan.scm (string->license): Expect vectors instead of
lists.
(module->dist-name): Use 'json-fetch' instead of 'json-fetch-alist'.
(cpan-fetch): Likewise.
* guix/import/crate.scm (crate-fetch): Likewise, and call 'vector->list'
for DEPS.
* guix/import/gem.scm (rubygems-fetch): Likewise.
* guix/import/json.scm (json-fetch-alist): Remove.
* guix/import/pypi.scm (pypi-fetch): Use 'json-fetch' instead of
'json-fetch-alist'.
(latest-source-release, latest-wheel-release): Call 'vector->list' on
RELEASES.
* guix/import/stackage.scm (stackage-lts-info-fetch): Use 'json-fetch'
instead of 'json-fetch-alist'.
(lts-package-version): Use 'vector->list'.
* guix/import/utils.scm (hash-table->alist): Remove.
(alist->package): Pass 'vector->list' on the inputs fields, and default
to the empty vector.
* guix/scripts/import/json.scm (guix-import-json): Remove call to
'hash-table->alist'.
* guix/swh.scm (define-json-reader): Expect pair? or null? instead of
hash-table?.
[extract-field]: Use 'assoc-ref' instead of 'hash-ref'.
(json->branches): Use 'map' instead of 'hash-map->list'.
(json->checksums): Likewise.
(json->directory-entries, origin-visits): Call 'vector->list' on the
result of 'json->scm'.
* tests/import-utils.scm ("alist->package with dependencies"): New test.
* gnu/installer.scm (build-compiled-file)[builder]: Use GUILE-JSON-3.
* gnu/installer.scm (installer-program)[installer-builder]: Likewise.
* gnu/installer/locale.scm (iso639->iso639-languages): Use 'assoc-ref'
instead of 'hash-ref', and pass vectors through 'vector->list'.
(iso3166->iso3166-territories): Likewise.
* gnu/system/vm.scm (system-docker-image)[build]: Use GUILE-JSON-3.
* guix/docker.scm (manifest, config): Adjust for Guile-JSON 3.
* guix/scripts/pack.scm (docker-image)[build]: Use GUILE-JSON-3.
* guix/import/github.scm (fetch-releases-or-tags): Update docstring.
(latest-released-version): Use 'assoc-ref' instead of 'hash-ref'.  Pass
the result of 'fetch-releases-or-tags' to 'vector->list'.
* guix/import/launchpad.scm (latest-released-version): Likewise.
2019-07-25 00:16:41 +02:00
宋文武 3c618b9894
deploy: Handle the '--system' command line option.
* guix/scripts/deploy.scm (show-help): Add help for '--system'.
(%options): Add '-s' and '--system'.
(guix-deploy): Parameterize %current-system.
2019-07-24 20:34:01 +08:00
宋文武 2fa23d8f5c
deploy: Honor '--no-grafts'.
* guix/scripts/deploy.scm (guix-deploy): Parameterize '%graft?'.
2019-07-24 20:34:01 +08:00
Ricardo Wurmus 2541379ee4
build-system/texlive: Add texlive-origin.
* guix/build-system/texlive.scm (texlive-origin): New procedure.
2019-07-23 21:43:24 +02:00