36ec599e78
gnu: Add ghc-lzma.
...
* gnu/packages/haskell.scm (ghc-lzma): New variable.
2018-10-05 23:59:26 +02:00
d05ed20ef1
gnu: Add ghc-cereal-conduit.
...
* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
2018-10-05 23:59:26 +02:00
6c8197783d
gnu: Add ghc-atomic-write.
...
* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
2018-10-05 23:59:25 +02:00
562cfae330
gnu: Add ghc-chart-cairo.
...
* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
2018-10-05 23:59:25 +02:00
7df25c77c5
gnu: Add ghc-cairo.
...
* gnu/packages/haskell.scm (ghc-cairo): New variable.
2018-10-05 23:59:25 +02:00
279c97dba8
gnu: ghc-regex: Fix build.
...
* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax
version checks.
2018-10-05 23:59:25 +02:00
a45c64701b
gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs.
...
* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove
ghc-http-client.
2018-10-05 23:59:25 +02:00
42384b517e
progress: Fix total size in "@ download-succeeded" traces.
...
Fixes a regression introduced in
1d0be47ab6
2018-10-05 23:54:18 +02:00
11ff2adc74
gnu: ruby-sass: Update to 3.6.0.
...
* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0.
[source]: Update sha256.
[native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
2018-10-05 21:25:42 +01:00
4d372cb9a2
gnu: Add ruby-mathn.
...
* gnu/packages/ruby.scm (ruby-mathn): New variable.
2018-10-05 21:25:42 +01:00
2c7cb711e9
gnu: ruby-sass-spec: Fix spec expectation.
...
This fixes building ruby-sass with Ruby 2.5.
* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
2018-10-05 21:25:42 +01:00
39ecb977d3
gnu: ruby-term-ansicolor: Fix test for Ruby 2.5.
...
* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
2018-10-05 21:25:41 +01:00
0b060e3486
gnu: ruby-shindo: Remove -rubygems flags.
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These have been removed in Ruby 2.5.
* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
2018-10-05 21:25:41 +01:00
357450dca0
gnu: bioruby: Update to 1.5.2.
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This works with Ruby 2.5.
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
2018-10-05 21:25:39 +01:00
b0e829c632
gnu: gnucash-docs: Update to 3.3.
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The documentation on SourceForge is now located in the same directory as the
source code.
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
2018-10-05 14:28:44 -04:00
73ca145a7e
gnu: gnucash: Update to 3.3.
...
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
2018-10-05 13:41:08 -04:00
fc4738149f
gnu: Add bastet.
...
* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-05 19:32:45 +02:00
b008a12ae7
gnu: fdroidserver: Update to 1.0.10.
...
* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
2018-10-05 19:30:09 +02:00
8713c03e55
gnu: audacity: Don't use unstable tarball.
...
* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-05 19:30:09 +02:00
3f90445692
gnu: filezilla: Update to 3.37.4.
...
* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
2018-10-05 19:30:09 +02:00
38aca674c3
gnu: libfilezilla: Update to 0.14.0.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
2018-10-05 19:30:08 +02:00
a6798218be
gnu: samtools-0.1: Adjust to match changes in samtools.
...
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
2018-10-05 09:21:54 +02:00
8e72f0f319
gnu: deeptools: Update to 3.1.2.
...
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
2018-10-05 09:21:54 +02:00
939882f734
gnu: python-pysam: Update to 0.15.1.
...
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
2018-10-05 09:21:54 +02:00
1a28b9ab55
gnu: python-plotly: Add python-pandas to inputs.
...
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
2018-10-05 09:21:54 +02:00
f79b59e311
gnu: bcftools: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
2018-10-05 09:21:54 +02:00
4ae4a15232
gnu: samtools: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
2018-10-05 09:21:54 +02:00
bd5f5eece9
gnu: htslib: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
2018-10-05 09:21:50 +02:00
4a5e2a90d8
gnu: icecat: Add fixes from mozilla-esr60 [security fixes].
...
Includes fixes for CVE-2018-12386 and CVE-2018-12387.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.
2018-10-04 21:35:01 -04:00
2e073dc23c
gnu: linux-libre: Update to 4.18.12.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.
2018-10-04 20:36:32 -04:00
2195636cc1
gnu: linux-libre@4.14: Update to 4.14.74.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.
2018-10-04 20:36:30 -04:00
45f4ddd7c0
gnu: linux-libre@4.9: Update to 4.9.131.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
2018-10-04 20:36:28 -04:00
9e2aa70bad
gnu: petsc-openmpi: Configure with support for MUMPS solver.
...
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase
ahead of 'configure' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-10-04 18:21:17 -04:00
d8b042326d
gnu: hiawatha: Set sane run-time directory defaults.
...
* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default
directories. Replace the 'remove-empty-dirs' phase with a
'install-no-empty-directories' one.
2018-10-04 21:28:24 +02:00
b9b53fb4ff
gnu: hwloc: Update to 2.0.2.
...
* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
2018-10-04 21:28:24 +02:00
7382ecd818
gnu: Add nsd.
...
* gnu/packages/dns.scm (nsd): New public variable.
2018-10-04 21:10:34 +02:00
55b616fd15
gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779.
...
* gnu/packages/guile.scm (guile-next): Update to commit
6f3357b0df64c4be17e72079864c09a542f1c779.
2018-10-04 13:22:02 -04:00
e14b3067e3
gnu: guile-next: Add the correct native search paths.
...
* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0.
2018-10-04 13:21:50 -04:00
aff91b0d0b
gnu: hiawatha: Support HTTP/2.
...
* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2
to ENABLE_HTTP2.
[inputs]: Add nghttp2:lib.
2018-10-04 19:06:06 +02:00
8e87aa0497
gnu: hiawatha: Update to 10.8.3.
...
* gnu/packages/web.scm (hiawatha): Update to 10.8.3.
[source]: Also delete bundled copy of nghttp2.
[inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache.
* gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable.
2018-10-04 18:34:29 +02:00
38a9bf805d
gnu: mbedtls-apache: Update to 2.13.0 [security fixes].
...
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0.
[native-inputs]: Add python.
2018-10-04 17:42:30 +02:00
68c0a6260f
gnu: geos: Update to 3.7.0.
...
* gnu/packages/geo.scm (geos): Update to 3.7.0.
2018-10-04 20:01:06 +05:30
0136fbd167
gnu: hexedit: Update to 1.4.2.
...
* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2.
[source]: Use the author's more up-to-date git repository.
[native-inputs]: Add autoconf and automake.
2018-10-04 15:59:08 +02:00
4fab0da096
gnu: html-xml-utils: Update to 7.7.
...
* gnu/packages/xml.scm (html-xml-utils): Update to 7.7.
2018-10-04 15:59:08 +02:00
ddf72f5059
gnu: perl-xml-feed: Update to 0.54.
...
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54.
2018-10-04 15:59:07 +02:00
ca91d35225
gnu: guix: Update to 1d0be47.
...
* gnu/packages/package-management.scm (guix): Update to 1d0be47
2018-10-04 11:21:37 +02:00
1d0be47ab6
progress: Generate valid 'download-progress' traces when the size is unknown.
...
Fixes <https://bugs.gnu.org/32895 >.
Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>.
* guix/progress.scm (progress-reporter/trace): In 'stop', make sure SIZE
is an integer. Previously we'd generate a "@ download-progress" trace
with #f for the 'transferred' number when downloading files whose size
is not known in advance.
2018-10-04 10:24:34 +02:00
ff30bb010b
gnu: escpr: Update to 1.6.30.
...
* gnu/packages/cups.scm (escpr): Update to 1.6.30.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-04 09:51:47 +02:00
63856931db
gnu: opencv: Update to 3.4.3.
...
[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-10-03T22:28:20+0200 using DSA]]
* gnu/packages/image-processing.scm (opencv): Update to 3.4.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-04 09:48:45 +02:00
666fb2884a
gnu: r-acclma: Fix uses of @acronym in description.
...
* gnu/packages/cran.scm (r-acclma)[description]: Fix order of arguments
to @acronym. The wrong order was causing 'stexi->shtml' to fail (match
error).
2018-10-04 09:46:43 +02:00
Ricardo Wurmus