Commit Graph

23084 Commits

Author SHA1 Message Date
Leo Famulari 7d02ae4b85
gnu: Remove go-github-com-tjfoc-gmsm-sm4.
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari 7915ef0bff
gnu: Remove go-github-com-klauspost-reedsolomon.
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove
variable.
2018-03-06 13:24:19 -05:00
Leo Famulari abb8973544
gnu: Remove go-github-com-klauspost-cpuid.
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari eaca421063
gnu: Remove go-github-com-ccding-go-stun.
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari bb0a84f89d
gnu: Remove go-github-com-xtaci-kcp-go.
* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari 78f19a4754
gnu: Remove go-github-com-xtaci-smux.
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
2018-03-06 13:24:15 -05:00
Marius Bakke 77412c45b1
gnu: re2: Update to 2018-03-01.
* gnu/packages/regex.scm (re2): Update to 2018-03-01.
2018-03-06 18:23:42 +01:00
Marius Bakke 37204750b1
gnu: feh: Update to 2.25.
* gnu/packages/image-viewers.scm (feh): Update to 2.25.
2018-03-06 18:22:26 +01:00
Marius Bakke 6836c228ae
gnu: iceauth: Update to 1.0.8.
* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
2018-03-06 18:16:51 +01:00
Marius Bakke 6f1f8d1312
gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537].
See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for
more information about the vulnerabilities.

* gnu/packages/django.scm (python-django): Update to 1.11.11.
2018-03-06 17:38:12 +01:00
Ricardo Wurmus c072cf57b9
gnu: samtools: Update to 1.7.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus 727d847980
gnu: htslib: Update to 1.7.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus e325c89076
gnu: r-rhdf5: Make build reproducible.
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus fe58ab013b
gnu: r-lambda-r: Run unit tests.
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus 08ddb98aef
gnu: r-gtools: Make output deterministic.
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
2018-03-06 16:03:04 +01:00
Oleg Pykhalov 5ad13e6cdf
gnu: emacs-transmission: Update to 0.12.1.
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
2018-03-06 12:09:02 +03:00
Oleg Pykhalov 69611d3eac
gnu: haskell-mode: Fix find emacs-stream elisp directory.
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
2018-03-06 10:34:59 +03:00
Rutger Helling cee03b267c
gnu: ovmf: Fix build and add FIXME.
* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME
about failing script.
2018-03-06 08:27:07 +01:00
Gábor Boskovits 0f2778029a
gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version.
* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>:
Modify fix-version to use the distibution version of java-aqute-bndlib.
2018-03-05 20:42:48 +01:00
Tobias Geerinckx-Rice c8213ffc52
gnu: perl-email-address: Update to 1.909.
* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 1c3de94cff
gnu: perl-sub-quote: Update to 2.005000.
* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 503a00597b
gnu: perl-xml-compile-cache: Update to 1.06.
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice b5de208e84
gnu: perl-xml-rss: Update to 1.60.
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 437e5fae13
gnu: editres: Update to 1.0.7.
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice cc7a4bbd27
gnu: tocc, libtocc: Use HTTPS home page.
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 55b7cd10c2
gnu: perl-io-socket-ip: Update to 0.39.
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 530df311ac
gnu: perl-www-mechanize: Update to 1.87.
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 9599339c59
gnu: openvpn: Mark up description.
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 0d34993a65
gnu: openvpn: Update to 2.4.5.
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 211748d475
gnu: papi: Use HTTPS home page.
* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
2018-03-05 17:32:08 +01:00
Tobias Geerinckx-Rice f7c870f78a
gnu: papi: Fix documentation location.
* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.
2018-03-05 17:32:08 +01:00
Rutger Helling 0ebc1b934d
gnu: xpra: Update to 2.2.5.
* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
2018-03-05 12:29:37 +01:00
Mark H Weaver 6a4eaafee0
gnu: linux-libre@4.14: Update to 4.14.24.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24.
(%linux-libre-4.14-hash): Update hash.
2018-03-05 03:43:45 -05:00
Mark H Weaver ee483a5626
gnu: linux-libre@4.9: Update to 4.9.86.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
2018-03-05 03:43:02 -05:00
Mark H Weaver 88b1a38e26
gnu: linux-libre@4.4: Update to 4.4.120.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
2018-03-05 03:42:07 -05:00
Christopher Baines 68d70f6ae3
gnu: Add emacs-terraform-mode.
* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
2018-03-05 07:48:49 +00:00
Christopher Baines dc97f7e20e
gnu: Add emacs-hcl-mode.
* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
2018-03-05 07:48:48 +00:00
Efraim Flashner 16718b6776
services: Add openntpd service.
* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to
set openntpd daemon's user and localstatedir. Add a custom phase to not
try to create said directory at install time.
* gnu/services/networking.scm (<openntpd-configuration>): New record type.
(openntpd-shepherd-service, openntpd-service-activation): New procedures.
(openntpd-service-type): New variable.
* doc/guix.texi (Networking Services): Add openntpd documentation.
2018-03-05 08:46:28 +02:00
Tobias Geerinckx-Rice ac1a9ce8b0
gnu: papi: Update phase style.
* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for
SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.
2018-03-04 18:03:46 +01:00
Tobias Geerinckx-Rice 635dd0cc96
gnu: tomb: Update phase style.
* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice 9539016e3a
gnu: tomb: Use HTTPS home page.
* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice ed36949a9d
gnu: footswitch: Update to 0.1-2.deedd87.
* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice bd128d5e88
gnu: footswitch: Remove redundant MKDIR-P.
* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P
before INSTALL-FILE.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice 92793c7b02
gnu: gitolite: Update phase style.
* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 7730b7179c
gnu: gitolite: Update to 3.6.7.
* gnu/packages/version-control.scm (gitolite): Update to 3.6.7.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice d035eaa304
gnu: ii, sic: Use HTTPS home pages.
* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice e0dbead5a7
gnu: ii: Update to 1.8.
* gnu/packages/irc.scm (ii): Update to 1.8.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 53244d1ffa
gnu: cloc: Update phase style.
* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM*
and end phases with #t.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 95943ed7dc
gnu: cloc: Update to 1.76.
* gnu/packages/code.scm (cloc): Update to 1.76.
[source]: Update origin URI scheme.
[inputs]: Add perl-parallel-forkmanager.
2018-03-04 18:03:43 +01:00
Tobias Geerinckx-Rice 03b7195794
gnu: liblo: Mark up description.
* gnu/packages/audio.scm (liblo)[description]: Use @dfn.
2018-03-04 18:03:43 +01:00
Marius Bakke 3e57b7d99b
gnu: multipath-tools: Update to 0.7.4.
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4.
[source]: Download using HTTPS.
2018-03-04 17:54:40 +01:00
Marius Bakke 5275f69e6e
gnu: freexl: Update to 1.0.5 [security fixes].
Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and
CVE-2018-7439.

* gnu/packages/xml.scm (freexl): Update to 1.0.5.
2018-03-04 17:54:40 +01:00
Marius Bakke 5b0b520e22
gnu: ceph: Update to 12.2.4.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags.  Build with
CMAKE-3.11.  Adjust file substitutions.  Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66.  Add PYTHON2-PRETTYTABLE.
2018-03-04 17:54:40 +01:00
Marius Bakke 1568cc14fa
gnu: Add cmake@3.11.
* gnu/packages/cmake.scm (cmake-3.11): New public variable.
2018-03-04 17:54:40 +01:00
Marius Bakke bbce53c4b3
gnu: Add boost@1.66.0.
* gnu/packages/boost.scm (boost-1.66): New public variable.
2018-03-04 17:54:40 +01:00
Marius Bakke 8293d21c66
gnu: java-snappy: Update to 1.1.7.
* gnu/packages/compression.scm (java-snappy): Update to 1.1.7.
[arguments]: Use INVOKE instead of SYSTEM*.  Avoid CMAKE dependency.  Delete
Hadoop test.  Enable fixed test.
[native-inputs]: Add JAVA-COMMONS-LANG and JAVA-COMMONS-IO.
2018-03-04 17:54:40 +01:00
Marius Bakke 5a43735722
gnu: snappy: Update to 1.1.7.
* gnu/packages/compression.scm (snappy): Update to 1.1.7.
[source]: Change to git archive.  Set file-name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.
[description]: Fix infractions.
2018-03-04 17:54:39 +01:00
Marius Bakke 7fa9cca84a
gnu: rocksdb: Update to 5.10.4.
* gnu/packages/databases.scm (rocksdb): Update to 5.10.4.
[source]: Substitute the unbundled copy of GNU Parallel.
[arguments]: Add "V=1" "USE_RTTI=1" and
"ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags.  Set #:test-target to
"check_some".  Respect parallel jobs in 'build-release-libraries' phase and
rename to 'build'.
[license]: Update for changes in 5.5.4.
2018-03-04 17:54:39 +01:00
Danny Milosavljevic 81ed306dee
gnu: inkscape: Disable duplicate icon cache generation.
* gnu/packages/inkscape.scm (inkscape): Disable duplicate icon cache
generation.
2018-03-04 15:44:34 +01:00
Danny Milosavljevic 692f6e457e
gnu: abiword: Disable duplicate icon cache generation.
* gnu/packages/abiword.scm (abiword): Disable duplicate icon cache generation.
2018-03-04 15:43:46 +01:00
Danny Milosavljevic 64cdd73c22
gnu: python-funcy: Fix tests.
* gnu/packages/python.scm (python-funcy)[native-inputs]: Delete python-pytest-warnings.
2018-03-04 15:42:41 +01:00
Gábor Boskovits 48c8622010
gnu: antlr3-3.3: Fix java8 issue.
* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch.
* gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:16:37 +01:00
Gábor Boskovits 4c763b4d67
gnu: antlr3-3.1: Fix java8 issue.
* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch.
* gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:13:47 +01:00
Efraim Flashner 82f09c0e8e
gnu: go-github-com-aki237-nscjar: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-aki237-nscjar)[source]: Declare
a source file-name.
2018-03-04 12:38:51 +02:00
Efraim Flashner 6de107b0c9
gnu: go-github-com-davidjpeacock-cli: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-davidjpeacock-cli)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner fdbece74aa
gnu: go-github-com-alsm-ioprogress: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-alsm-ioprogress)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner 661ad6f0c2
gnu: freegish: Declare a source file-name.
* gnu/packages/games.scm (freegish)[source]: Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner a1dc853ef4
gnu: disorderfs: Declare a source file-name.
* gnu/packages/file-systems.scm (disorderfs)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner aeb95f1f97
gnu: emacs-sly: Declare a source file-name.
* gnu/packages/emacs.scm (emacs-sly)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner 5a6f7a6805
gnu: emacs-epl: Declare a source file-name.
* gnu/packages/emacs.scm (emacs-epl)[source]: Declare a source
file-name.
2018-03-04 12:38:47 +02:00
Efraim Flashner c553b08b49
gnu: python-apsw: Use invoke.
* gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.
2018-03-04 12:05:14 +02:00
Efraim Flashner f5c847ebd0
gnu: python-apsw: Declare a source file-name.
* gnu/packages/databases.scm (python-apsw)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner c2c04cde9b
gnu: kurly: Declare a source file-name.
* gnu/packages/curl.scm (kurly)[source]: Declare a source file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner 277be74fa7
gnu: unshield: Declare a source file-name.
* gnu/packages/compression.scm (unshield)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner eafe96ea9e
gnu: sfarkxtc: Declare a source file-name.
* gnu/packages/compression.scm (sfarkxtc)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner da49d13710
gnu: piranha: Declare a source file-name.
* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner d9a069c2d9
gnu: libdivsufsort: Declare a source file-name.
* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner 5110672474
gnu: seek: Declare a source file-name.
* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner b1d4026dfb
gnu: r-dropbead: Declare a source file-name.
* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
2018-03-04 12:05:10 +02:00
Efraim Flashner a1eb506cf3
gnu: faust@2: Declare a source file-name.
* gnu/packages/audio.scm (faust@2)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner fdf359f82b
gnu: rubberband: Declare a source file-name.
* gnu/packages/audio.scm (rubberband)[source]: Declare a source
file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 70aa07d296
gnu: qjackrcd: Declare a source file-name.
* gnu/packages/audio.scm (qjackrcd)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 6677c99a8b
gnu: lv2-devel: Declare a source file-name.
* gnu/packages/audio.scm (lv2-devel)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 35a01e67c8
gnu: lv2-mda-piano: Declare a source file-name.
* gnu/packages/audio.scm (lv2-mda-piano)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
Efraim Flashner a18ee793d7
gnu: papagayo: Declare a source file-name.
* gnu/packages/animation.scm (papagayo)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
Efraim Flashner 7fc944273d
gnu: masscan: Declare a source file-name.
* gnu/packages/admin.scm (masscan)[source]: Declare a source file-name.
2018-03-04 11:01:36 +02:00
Tobias Geerinckx-Rice c94752ad22
gnu: tor: Update to 0.3.2.10 [security fixes].
This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490),
TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well.

* gnu/packages/tor.scm (tor): Update to 0.3.2.10.
2018-03-03 21:31:08 +01:00
Ricardo Wurmus 1adeef3194
gnu: Add dropseq-tools.
* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
2018-03-03 21:28:05 +01:00
Ricardo Wurmus 72299db9fe
gnu: Add java-picard-2.10.3.
* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
2018-03-03 21:28:02 +01:00
Ricardo Wurmus 719fa958f3
gnu: Add java-htsjdk-2.10.1.
* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
2018-03-03 21:27:59 +01:00
Ricardo Wurmus 9a599c17b7
gnu: Add java-htsjdk-latest.
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
2018-03-03 21:27:57 +01:00
Ricardo Wurmus 9ac7db1830
gnu: Add java-biojava-alignment-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
2018-03-03 21:27:56 +01:00
Ricardo Wurmus 5528f9e8f0
gnu: Add java-biojava-phylo-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
2018-03-03 21:27:53 +01:00
Ricardo Wurmus e44da58c16
gnu: Add java-biojava-core-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
2018-03-03 21:27:51 +01:00
Ricardo Wurmus 22c09c335b
gnu: Add java-biojava-alignment.
* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
2018-03-03 21:27:48 +01:00
Ricardo Wurmus b28c803708
gnu: Add java-biojava-phylo.
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
2018-03-03 21:27:46 +01:00
Ricardo Wurmus 10645b9212
gnu: Add java-forester-1.005.
* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
2018-03-03 21:27:44 +01:00
Ricardo Wurmus f09d16e594
gnu: Add java-forester.
* gnu/packages/bioinformatics.scm (java-forester): New variable.
2018-03-03 21:27:41 +01:00
Ricardo Wurmus 93abc975fe
gnu: Add java-openchart2.
* gnu/packages/java.scm (java-openchart2): New variable.
2018-03-03 21:27:39 +01:00
Ricardo Wurmus 5fef15e506
gnu: Add java-biojava-core.
* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
2018-03-03 21:27:36 +01:00
Ricardo Wurmus dbb3581383
gnu: Add java-jdistlib.
* gnu/packages/statistics.scm (java-jdistlib): New variable.
2018-03-03 21:27:33 +01:00
Ricardo Wurmus 4e92911c82
gnu: Add java-jtransforms.
* gnu/packages/algebra.scm (java-jtransforms): New variable.
2018-03-03 21:27:30 +01:00
Ricardo Wurmus 24074b0bdd
gnu: Add java-jlargearrays.
* gnu/packages/algebra.scm (java-jlargearrays): New variable.
2018-03-03 21:27:27 +01:00
Ricardo Wurmus c8d996080e
gnu: Add java-la4j.
* gnu/packages/algebra.scm (java-la4j): New variable.
2018-03-03 21:27:21 +01:00
Ricardo Wurmus bd975831c6
gnu: Add fastqc.
* gnu/packages/bioinformatics.scm (fastqc): New variable.
2018-03-03 21:21:48 +01:00
Ricardo Wurmus 2f0d041816
gnu: Add java-cisd-jhdf5.
* gnu/packages/java.scm (java-cisd-jhdf5): New variable.
2018-03-03 21:21:48 +01:00
Ricardo Wurmus 04ddca26e6
gnu: Add java-cisd-args4j.
* gnu/packages/java.scm (java-cisd-args4j): New variable.
2018-03-03 21:21:47 +01:00
Ricardo Wurmus 30d554732a
gnu: Add java-cisd-base.
* gnu/packages/java.scm (java-cisd-base): New variable.
2018-03-03 21:21:47 +01:00
Ricardo Wurmus f9e0fcb28f
gnu: Add texlive-fonts-iwona.
* gnu/packages/tex.scm (texlive-fonts-iwona): New variable.
2018-03-03 21:21:47 +01:00
Nicolas Goaziou fb547c3429
gnu: dictionaries: Add copyright line.
* gnu/packages/dictionaries.scm: Add copyright line.
2018-03-03 14:23:17 +01:00
Nicolas Goaziou 5e332c57d1
gnu: wireshark: Update to 2.4.5.
* gnu/packages/networking.scm (wireshark): Update to 2.4.5.
2018-03-03 14:21:20 +01:00
Nicolas Goaziou 0645da3fe3
gnu: grammalecte: Update to 0.6.2.
* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2.
[arguments]: Remove.
2018-03-03 14:06:43 +01:00
Christopher Baines 62b138caf5
gnu: Add ruby-iruby.
* gnu/packages/ruby.scm (ruby-iruby): New variable.
2018-03-03 12:51:27 +00:00
Christopher Baines 8279b1d3b1
gnu: Add ruby-mimemagic.
* gnu/packages/ruby.scm (ruby-mimemagic): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines b03eb6acb4
gnu: Add ruby-data_uri.
* gnu/packages/ruby.scm (ruby-data_uri): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines d0afff263c
gnu: Add ruby-cztop.
* gnu/packages/ruby.scm (ruby-cztop): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines fe5dd5f446
gnu: Add ruby-czmq-ffi-gen.
* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines afdb437c82
gnu: Add ruby-bond.
* gnu/packages/ruby.scm (ruby-bond): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines a8d2bf3cab
gnu: Add ruby-bacon-bits.
* gnu/packages/ruby.scm (ruby-bacon-bits): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines cf646acf96
gnu: Add ruby-mocha-on-bacon.
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
2018-03-03 12:51:25 +00:00
Christopher Baines 433dc74611
gnu: networking: Add czmq.
* gnu/packages/networking.scm (czmq): New variable.
2018-03-03 12:51:23 +00:00
Tobias Geerinckx-Rice add928d35f
gnu: ghc-refact: Fix typo in description.
* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo.
2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice 75377c6c48
gnu: quagga: Update to 1.2.4.
* gnu/packages/networking.scm (quagga): Update to 1.2.4.
2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice e6d30cf755
gnu: conky: Remove redundant MKDIR-P.
* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P.
2018-03-03 13:27:17 +01:00
Tobias Geerinckx-Rice 9d13f82da8
gnu: sslh: Update to 1.19c.
* gnu/packages/networking.scm (sslh): Update to 1.19c.
2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice dbefd3ff72
gnu: wv: Edit description.
Wv is still unmaintained – this just makes it more obvious.

* gnu/packages/wv.scm (wv)[description]: Mention the product versions in
addition to internal file format ones.  Align more closely with the
upstream description.
2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice 83a9003c5d
gnu: libseccomp: Update to 2.3.3.
* gnu/packages/linux.scm (libseccomp): Update to 2.3.3.
2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice 74a2f8ff1f
gnu: hdparm: Update to 9.54.
* gnu/packages/linux.scm (hdparm): Update to 9.54.
2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice f4009ade25
gnu: sdl2: Update to 2.0.8.
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
2018-03-03 13:27:15 +01:00
Ricardo Wurmus ec8b3d48ff
gnu: r-httpuv: Update to 1.3.6.2.
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
2018-03-03 10:46:35 +01:00
Ricardo Wurmus fac40f38fe
gnu: r-dbi: Update to 0.8.
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
2018-03-03 10:46:35 +01:00
Ricardo Wurmus 081d143d3b
gnu: r-performanceanalytics: Update to 1.5.2.
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2.
[propagated-inputs]: Add r-quadprog.
[native-inputs]: Remove gfortran.
2018-03-03 10:46:35 +01:00
Ricardo Wurmus 3ede1550e8
gnu: cutadapt: Update to 1.16.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
2018-03-02 23:44:16 +01:00
Ricardo Wurmus 62a4b952c0
gnu: python-xopen: Update to 0.3.2.
* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
2018-03-02 23:43:55 +01:00
Ricardo Wurmus fa5965990d
gnu: Add r-hpar.
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-02 23:24:57 +01:00
Ricardo Wurmus 2a112be09a
gnu: Add r-powerplus.
* gnu/packages/cran.scm (r-powerplus): New variable.
2018-03-02 23:07:26 +01:00
Ricardo Wurmus d976454c6b
gnu: Add r-np.
* gnu/packages/cran.scm (r-np): New variable.
2018-03-02 23:07:20 +01:00
Ricardo Wurmus 7b81a7eabf
gnu: Add r-phontools.
* gnu/packages/cran.scm (r-phontools): New variable.
2018-03-02 23:07:12 +01:00
Ricardo Wurmus 68b6a67e94
gnu: Add r-complexplus.
* gnu/packages/cran.scm (r-complexplus): New variable.
2018-03-02 23:07:04 +01:00
Ricardo Wurmus f96eda90d5
gnu: Add r-expm.
* gnu/packages/cran.scm (r-expm): New variable.
2018-03-02 23:06:57 +01:00
Ricardo Wurmus 7531ee842c
gnu: Add r-trend.
* gnu/packages/cran.scm (r-trend): New variable.
2018-03-02 23:06:50 +01:00
Ricardo Wurmus d32e572489
gnu: Add r-cubature.
* gnu/packages/cran.scm (r-cubature): New variable.
2018-03-02 23:06:41 +01:00
Ricardo Wurmus 6615a36421
gnu: Add r-urca.
* gnu/packages/cran.scm (r-urca): New variable.
2018-03-02 23:06:33 +01:00
Ricardo Wurmus 5b25bc55dc
gnu: Add r-fractal.
* gnu/packages/cran.scm (r-fractal): New variable.
2018-03-02 23:06:26 +01:00
Ricardo Wurmus 19da7fe314
gnu: Add r-extradistr.
* gnu/packages/cran.scm (r-extradistr): New variable.
2018-03-02 23:06:17 +01:00
Ricardo Wurmus 4993a02ad7
gnu: Add r-tsa.
* gnu/packages/cran.scm (r-tsa): New variable.
2018-03-02 23:06:10 +01:00
Ricardo Wurmus a2c079a780
gnu: Add r-wmtsa.
* gnu/packages/cran.scm (r-wmtsa): New variable.
2018-03-02 23:06:00 +01:00
Ricardo Wurmus b6dc325538
gnu: Add r-tseries.
* gnu/packages/cran.scm (r-tseries): New variable.
2018-03-02 23:05:52 +01:00
Ricardo Wurmus dceb159206
gnu: Add r-quantmod.
* gnu/packages/cran.scm (r-quantmod): New variable.
2018-03-02 23:05:43 +01:00
Ricardo Wurmus 0be7effefa
gnu: Add r-sapa.
* gnu/packages/cran.scm (r-sapa): New variable.
2018-03-02 23:05:35 +01:00
Ricardo Wurmus 034ac9d67a
gnu: Add r-ifultools.
* gnu/packages/cran.scm (r-ifultools): New variable.
2018-03-02 23:05:14 +01:00
Ricardo Wurmus d3cb62e58d
gnu: Add r-splus2r.
* gnu/packages/cran.scm (r-splus2r): New variable.
2018-03-02 23:05:02 +01:00
Ricardo Wurmus 0b64332c74
gnu: Add r-leaps.
* gnu/packages/cran.scm (r-leaps): New variable.
2018-03-02 23:03:10 +01:00
Ricardo Wurmus 93c21ddc86
gnu: Add r-ttr.
* gnu/packages/cran.scm (r-ttr): New variable.
2018-03-02 22:55:10 +01:00
Ricardo Wurmus 4e35c4290e
gnu: Add r-rbiofabric.
* gnu/packages/graph.scm (r-rbiofabric): New variable.
2018-03-02 22:23:18 +01:00
Ricardo Wurmus 1088744d87
gnu: Add r-sna.
* gnu/packages/cran.scm (r-sna): New variable.
2018-03-02 22:23:18 +01:00
Ricardo Wurmus 07a2f34d5c
gnu: Add r-statnet-common.
* gnu/packages/cran.scm (r-statnet-common): New variable.
2018-03-02 22:23:18 +01:00
Ricardo Wurmus 5f4565b18f
gnu: Add r-network.
* gnu/packages/cran.scm (r-network): New variable.
2018-03-02 22:23:18 +01:00
Tobias Geerinckx-Rice b01a1b34f2
gnu: nghttp2: Update to 1.31.0.
* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 6fda93e6c8
gnu: libpsl: Update to 0.20.1.
* gnu/packages/web.scm (libpsl): Update to 0.20.1.
2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 5658b4ce69
gnu: zerofree: Update to 1.1.1.
* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice a40f732bb6
gnu: python-webencodings: Fix typo in description.
* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 139ecdee8e
gnu: delta: Remove redundant code.
* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P
calls.
2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice defe0282c2
gnu: perl-mozilla-ca: Update to 20180117.
* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117.
2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice dc8584d2b1
gnu: perl-test-harness: Update to 3.41.
* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41.
2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice 6e48fbb19a
gnu: highlight: Don't hard-code Lua version.
* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the
Lua prefix programatically instead of hard-coding it.
2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice 3a5c02777d
gnu: highlight: Update to 3.42.
* gnu/packages/pretty-print.scm (highlight): Update to 3.42.
2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 467834d550
gnu: ghc-abstract-deque: Fix typos in description.
* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos.
2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice d338321ddb
gnu: qscintilla: Use HTTPS home page.
* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS.
2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 2c1cc27f8f
gnu: fortify-headers: Update to 0.9.
* gnu/packages/suckless.scm (fortify-headers): Update to 0.9.
2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 5c0f68e844
gnu: fossil: Update phase style.
* gnu/packages/version-control.scm (fossil)[arguments]: Substitute
INVOKE for SYSTEM* and end phases with #t.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice f136c8f23d
gnu: gnome-mpv: Update to 0.14.
* gnu/packages/video.scm (gnome-mpv): Update to 0.14.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 65a3c342b0
gnu: ath9k-htc-firmware: Use INSTALL-FILE.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute
INSTALL-FILE for COPY-FILE with MKDIR-P.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice f563d19904
gnu: ovmf: Update phase style.
* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and
end phases with #t.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 0dae492195
gnu: ovmf: Use HTTPS home page.
* gnu/packages/firmware.scm (ovmf)[home-page]: Use HTTPS.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 3ebf12ea0e
gnu: b43-tools: Use HTTPS home page.
* gnu/packages/firmware.scm (b43-tools)[home-page]: Use HTTPS.
2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 315c89f5ba
gnu: b43-tools: Update phase style.
* gnu/packages/firmware.scm (b43-tools)[arguments]: Substitute INVOKE
for SYSTEM* and FOR-EACH for EVERY, and end phases with #t.
2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice bb5c358204
gnu: b43-tools: Update to 0.0.0-1.27892ef.
* gnu/packages/firmware.scm (b43-tools): Update to 0.0.0-1.27892ef.
[version]: Use our standard versioning scheme.
2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 12adfdf0b6
gnu: Update (gnu packages python-web) phase styles.
* gnu/packages/python-web.scm (python-openid, python-terminado)
(python-geventhttpclient, python-cachecontrol, python-webencodings)
(python-s3transfer)[arguments]: Substitute INVOKE for SYSTEM* and end
phases with #t.
2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 6a192184ec
gnu: python-flask-script: Update to 2.0.6.
* gnu/packages/python-web.scm (python-flask-script): Update to 2.0.6.
2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice 05075433a2
gnu: python-htmlmin: Update to 0.1.12.
* gnu/packages/python-web.scm (python-htmlmin): Update to 0.1.12.
2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice bda82eff18
gnu: python-s3transfer: Update to 0.1.13.
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.1.13.
2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice e46dd02d99
gnu: python-webtest: Update to 2.0.29.
* gnu/packages/python-web.scm (python-webtest): Update to 2.0.29.
2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice 6f21aca728
gnu: python-ndg-httpsclient: Update to 0.4.4.
* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.4.4.
2018-03-02 15:52:51 +01:00
Tobias Geerinckx-Rice 3c5658c596
gnu: python-cssutils: Update to 1.0.2.
* gnu/packages/python-web.scm (python-cssutils): Update to 1.0.2.
2018-03-02 15:52:51 +01:00
Tobias Geerinckx-Rice 1a6fb8dac1
gnu: python-flask-babel: Update to 0.11.2.
* gnu/packages/python-web.scm (python-flask-babel): Update to 0.11.2.
2018-03-02 15:52:51 +01:00
Mark H Weaver 99654a1685
gnu: icecat: Add more fixes from upstream mozilla-esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2018-03-02 01:31:30 -05:00
Mark H Weaver 8863f2f051
gnu: icecat: Update to 52.6.0-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1.
[source]: Remove patches that are no longer needed.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1414945.patch,
gnu/packages/patches/icecat-bug-1415133.patch,
gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-03-02 01:31:19 -05:00
Leo Famulari 703a8b7dc5
gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058].
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.8.
2018-03-01 20:01:48 -05:00
Leo Famulari bb17b2be49
gnu: postgresql: Update to 10.3 [fixes CVE-2018-1058].
* gnu/packages/databases.scm (postgresql): Update to 10.3.
2018-03-01 20:01:48 -05:00
Leo Famulari e9802319f7
gnu: memcached: Update to 1.5.6.
* gnu/packages/databases.scm (memcached): Update to 1.5.6.
2018-03-01 20:00:12 -05:00
Mark H Weaver da525e714a
gnu: linux-libre: Update to 4.15.7.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.7.
(%linux-libre-hash): Update hash.
2018-03-01 17:59:21 -05:00
Mark H Weaver 433765e599
gnu: linux-libre@4.14: Update to 4.14.23.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.23.
(%linux-libre-4.14-hash): Update hash.
2018-03-01 17:58:35 -05:00
Mark H Weaver 8b1f76c443
gnu: linux-libre@4.9: Update to 4.9.85.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.85.
2018-03-01 17:58:04 -05:00
Mark H Weaver 5026696033
gnu: linux-libre@4.4: Update to 4.4.119.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.119.
2018-03-01 17:57:22 -05:00
Julien Lepiller 8147d7c675
gnu: php: Fix test failure.
* gnu/packages/php.scm (php)[inputs]: Use gd-for-php.
(gd-for-php): New private variable.
* gnu/packages/patches/gd-CVE-2018-5711.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-03-01 22:25:28 +01:00
Tobias Geerinckx-Rice 738aa0ca1d
gnu: sdcc: Fix typo in description.
* gnu/packages/sdcc.scm (sdcc)[description]: Fix (upstream) typo.  Add
hyphens.
2018-03-01 22:21:02 +01:00
Tobias Geerinckx-Rice 1ff14bf2cd
gnu: sdcc: Update to 3.7.0.
* gnu/packages/sdcc.scm (sdcc): Update to 3.7.0.
2018-03-01 22:21:02 +01:00
Tobias Geerinckx-Rice bb47da4a6a
gnu: php: Update to 7.2.3.
* gnu/packages/php.scm (php): Update to 7.2.3.
2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice a9c0a133c0
gnu: python-stem: Update to 1.6.0.
* gnu/packages/python.scm (python-stem): Update to 1.6.0.
[arguments]: Add ‘fix-test-environment’ phase.
2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice 68e7632db0
gnu: onionshare: Update phase style.
* gnu/packages/tor.scm (onionshare)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice fbb0164a5f
gnu: privoxy: Update phase style.
* gnu/packages/tor.scm (privoxy)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice 66b89ee28e
gnu: python-stem: Update phase style.
* gnu/packages/python.scm (python-stem)[arguments]: Substitute INVOKE
for SYSTEM* and end phase with #t.
2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 57c734a628
gnu: liblo: Update to 0.29.
* gnu/packages/audio.scm (liblo): Update to 0.29.
2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 4972f9cc0a
gnu: nagios: Update to 4.3.4.
* gnu/packages/monitoring.scm (nagios): Update to 4.3.4.
2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 4f5452ab3a
gnu: libftdi: Use HTTPS home page.
* gnu/packages/libftdi.scm (libftdi)[home-page]: Use HTTPS.
2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 7314a5475e
gnu: dbacl: Use HTTPS home page.
* gnu/packages/textutils.scm (dbacl)[home-page]: Use HTTPS.
2018-03-01 22:20:59 +01:00
Tobias Geerinckx-Rice db317b38dc
gnu: dbacl: Update phase style.
* gnu/packages/textutils.scm (dbacl)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-01 22:20:59 +01:00
Ricardo Wurmus b672a81607
gnu: Graft glibc to allow execution on Linux 2.6.32.
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc-2.26-patched): New variable.
2018-03-01 21:32:36 +01:00
Ricardo Wurmus b79e1fbe96
gnu: r-httpuv: Update to 1.3.6.1.
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.1.
2018-03-01 21:28:54 +01:00
Ricardo Wurmus bfae3f7121
gnu: r-lubridate: Update to 1.7.3.
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.3.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus eaf0905970
gnu: r-tidyselect: Update to 0.2.4.
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.4.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 35d12b05f0
gnu: r-rmarkdown: Update to 1.9.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.9.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus dafd13d5b2
gnu: r-rcpparmadillo: Update to 0.8.400.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 36e1202b2c
gnu: r-yaml: Update to 2.1.17.
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus e3ddb56329
gnu: r-gdtools: Update to 0.1.7.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7.
[inputs]: Add zlib.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus e24ccf46f1
gnu: r-rpart: Update to 4.1-13.
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 744e06e717
gnu: r-mass: Update to 7.3-49.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 29c9c9c2c1
gnu: r-rmysql: Update to 0.10.14.
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 5e38673455
gnu: r-pillar: Update to 1.2.1.
* gnu/packages/cran.scm (r-pillar): Update to 1.2.1.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 9d6f392529
gnu: r-truncnorm: Update to 1.0-8.
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-8.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 9aaf2813e2
gnu: r-scran: Update to 1.6.8.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 6a0e13906b
gnu: r-wgcna: Update to 1.63.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 61cbd49b30
gnu: r-topgo: Update to 2.30.1.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 535014ce60
gnu: r-genomicranges: Update to 1.30.3.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus eb8971b742
gnu: r-limma: Update to 3.34.9.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 22d96920d3
gnu: r-edger: Update to 3.20.9.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 99e4b11d81
gnu: r-shortread: Update to 1.36.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus b180893289
gnu: r-dexseq: Update to 1.24.3.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
2018-03-01 21:28:52 +01:00
Efraim Flashner 360ea2bbd5
gnu: efl: Use separate "include" output.
* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
2018-03-01 22:19:37 +02:00
Efraim Flashner 40a7997e63
gnu: efl: Update to 1.20.7.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.
2018-03-01 22:18:58 +02:00
Ricardo Wurmus 643817e445
gnu: Add patchmatrix.
* gnu/packages/music.scm (patchmatrix): New variable.
2018-03-01 21:12:59 +01:00
Ricardo Wurmus 1debc5b9d2
gnu: ghc-uuid: Fix build.
* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer
version of QuickCheck.
2018-03-01 21:11:43 +01:00
Christopher Lemmer Webber 04e7b1e7f9
gnu: golly: Fix source url.
* gnu/packages/games.scm (golly): Fix source url.
2018-03-01 11:19:56 -06:00
Marius Bakke 52fb59ef25
gnu: imagemagick: Update to 6.9.9-36.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.
2018-03-01 17:40:49 +01:00
Marius Bakke fe29681717
gnu: libe-book: Update to 0.1.3.
* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3.
[propagated-inputs]: Add LIBLANGTAG.
2018-03-01 17:40:49 +01:00
Marius Bakke 814bc35d55
gnu: libabw: Update to 0.1.2.
* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2.
2018-03-01 17:40:48 +01:00
Marius Bakke c7cc1fcbe0
gnu: libpagemaker: Update to 0.0.4.
* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
Marius Bakke 9ed31fca81
gnu: libmspub: Update to 0.1.4.
* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
Marius Bakke 789445a10a
gnu: xorgproto: Update to 2018.4.
* gnu/packages/xorg.scm (xorgproto): Update to 2018.4.
2018-03-01 17:40:48 +01:00
Ludovic Courtès 21b5fc253e
gnu: cuirass: Update to aa4c778.
* gnu/packages/ci.scm (cuirass): Update to aa4c778.
2018-03-01 17:38:55 +01:00
Rene 35e2d0cfae
gnu: nautilus: Use meson-build-system, update to 3.26.2.
* gnu/packages/gnome.scm (nautilus): Update to 3.26.2.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils and gtk+:bin.
[inputs]: Add libselinux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-01 14:00:21 +01:00
Leo Famulari acb59d99db
gnu: Fix Borg crashes with Python msgpack > 0.5
The Python msgpack library changed its name, but borg (and possibly
other packages) still uses the old name.

Fixes <https://bugs.gnu.org/30662>.

* gnu/packages/python.scm (python-msgpack-transitional): New variable.
* gnu/packages/backup.scm (borg)[inputs]: Use it.
2018-02-28 23:43:23 -05:00
Ricardo Wurmus 2adfe819f0
gnu: Remove duplicate definition of emacs-esxml.
* gnu/packages/emacs.scm (emacs-esxml): Remove.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus c1d2236569
gnu: Remove emacs-nov.
The package already exists with the name "emacs-nov-el".

* gnu/packages/emacs.scm (emacs-nov): Remove.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 201084ac1f
gnu: java-bouncycastle-bcpkix: Use invoke.
* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 9be4b9fa58
gnu: java-bouncycastle-bcprov: Use invoke.
* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 1b6bc51675
gnu: java-lz4: Use invoke.
* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus ec32bc9860
gnu: antlr3-3.1: Remove version from package name.
* gnu/packages/java.scm (antlr3-3.1)[name]: Remove.
[arguments]: Adjust accordingly.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 13f38d31a4
gnu: antlr3-3.1: Use invoke.
* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus e85c1bf6cd
gnu: java-jansi-native: Simplify.
* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove
useless "mkdir-p".
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 3d6925ef51
gnu: java-jansi-native: Fix description.
* gnu/packages/java.scm (java-jansi-native)[description]: Replace placeholder
text with an actual description.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 6338ea9a88
gnu: java-hawtjni: Simplify build phases.
* gnu/packages/java.scm (java-hawtjni)[arguments]: Use "invoke" instead of
"system*"; use "install-file" instead of "mkdir-p" and "copy-file".
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 080d0b605a
gnu: java-commons-jexl-2: Use invoke.
* gnu/packages/java.scm (java-commons-jexl-2)[arguments]: Use invoke.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 8c7d32e07c
gnu: java-jnacl: Do not prefix jar with "java-".
* gnu/packages/java.scm (java-jnacl)[arguments]: Rename jar to "jnacl.jar".
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 3e87923a67
gnu: java-jnacl: Update to 0.1.0-2.094e819.
* gnu/packages/java.scm (java-jnacl): Update to 0.1.0-2.094e819.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 8333c206a9
gnu: java-jnacl: Simplify build phase.
* gnu/packages/java.scm (java-jnacl)[arguments]: Simplify "fix-tests" phase.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus e158642816
gnu: java-jnacl: Correct license.
* gnu/packages/java.scm (java-jnacl)[license]: Change to BSD-2.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 602f54f436
gnu: java-jnacl: Use invoke.
* gnu/packages/java.scm (java-jnacl)[arguments]: Use "invoke".
2018-02-28 23:05:05 +01:00
Ricardo Wurmus f201b18ed7
gnu: Add java-ecj-3.5.
* gnu/packages/java.scm (java-ecj-3.5): New variable.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus c1cb857645
gnu: Add java-ecj-3.
* gnu/packages/java.scm (java-ecj-3): New variable.
2018-02-28 23:05:05 +01:00
Tobias Geerinckx-Rice 9d43579f2d
gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461].
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 4321aeb6d3
gnu: html-xml-utils: Update to 7.6.
* gnu/packages/xml.scm (html-xml-utils): Update to 7.6.
2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 0828bd82bd
gnu: libftdi: Update to 1.4.
* gnu/packages/libftdi.scm (libftdi): Update to 1.4.
2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 30bbb86ae3
gnu: git-remote-gcrypt: Update to 1.0.2.
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.2.
2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice aa08ab38cd
gnu: dropbear: Update to 2018.76.
* gnu/packages/ssh.scm (dropbear): Update to 2018.76.
2018-02-28 22:58:23 +01:00
Konrad Hinsen 649eb8b567
gnu: Add sala.
* gnu/packages/password-utils.scm (sala): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-28 22:47:48 +01:00
Ludovic Courtès 4c853b7c11
gnu: guile-static-stripped: Add 'finit_module' wrapper.
* gnu/packages/patches/guile-linux-syscalls.patch: Add
'load-linux-module/fd' procedure.
2018-02-28 22:47:48 +01:00
Ludovic Courtès 63e48300d1
gnu: guile-static-stripped: Remove dependency on bash-minimal.
Previously guile-static-stripped, which is embedded in the initrd, would
depend on 'bash-minimal' and 'glibc'; the closure size was 77 MiB.  Now
the closure size is down to 45.7 MiB.

Reported by Danny Milosavljevic <dannym@scratchpost.org> in
<https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00505.html>.

* gnu/packages/make-bootstrap.scm (%guile-static): Remove the
'pre-configure' phase.
(%guile-static-stripped)[arguments]: Add #:allowed-references.
2018-02-28 22:47:48 +01:00
Efraim Flashner bcc6551083
gnu: ccl: Patch absolute file-name.
* gnu/packages/lisp.scm (ccl)[arguments]: In 'pre-build add substitution
for /bin/pwd.
2018-02-28 22:11:21 +02:00
Efraim Flashner da1b30bd93
gnu: keepassxc: Enable various plugins.
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add
configure-flags to enable favicons, browser integration and ssh-agent.
[inputs]: Add curl, libsodium.
2018-02-28 22:11:21 +02:00
Efraim Flashner 3374dcc78c
gnu: keepassxc: Update to 2.3.0.
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.0.
2018-02-28 22:11:17 +02:00
Marius Bakke 53453d7acc
gnu: wavpack: Fix CVE-2018-6767.
* gnu/packages/patches/wavpack-CVE-2018-6767.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/audio.scm (wavpack)[source](patches): Add it.
2018-02-28 20:29:46 +01:00
Marius Bakke 6b3ee23b7a
gnu: ldb: Update to 1.3.2.
* gnu/packages/samba.scm (ldb): Update to 1.3.2.
2018-02-28 20:17:31 +01:00
Marius Bakke 954b677195
gnu: p11-kit: Update to 0.23.10.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.10.
2018-02-28 20:13:41 +01:00
Marius Bakke f03ec1e595
gnu: feh: Update to 2.24.
* gnu/packages/image-viewers.scm (feh): Update to 2.24.
2018-02-28 20:01:03 +01:00
Alex Vong 6f45e45d4d
gnu: Add youtube-viewer.
* gnu/packages/video.scm (youtube-viewer): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
Alex Vong b5bbcda3ee
gnu: Add perl-gtk2.
* gnu/packages/gtk.scm (perl-gtk2): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
Alex Vong ee6911c7c0
gnu: Add perl-pango.
* gnu/packages/gtk.scm (perl-pango): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
Alex Vong 451f6e30eb
gnu: Add perl-glib.
* gnu/packages/glib.scm (perl-glib): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:57:33 +01:00
Alex Vong 4e028d7ad2
gnu: Add perl-cairo.
* gnu/packages/gtk.scm (perl-cairo): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:57:33 +01:00
Marius Bakke b0a2c9cbe9
gnu: python-webencodings: Update to 0.5.1.
* gnu/packages/python-web.scm (python-webencodings): Update to 0.5.1.
2018-02-28 16:02:55 +01:00
Marius Bakke 4ef80b2f58
gnu: python-html5lib: Update to 1.0.1.
* gnu/packages/python-web.scm (python-html5lib): Update to 1.0.1.
2018-02-28 16:01:43 +01:00
Marius Bakke a846f29dff
gnu: python-netifaces: Update to 0.10.6.
* gnu/packages/python.scm (python-netifaces): Update to 0.10.6.
[source](uri): Use PYPI-URI.
[home-page]: Update.
2018-02-28 15:40:44 +01:00
Marius Bakke fb2477f6d2
gnu: python-psutil: Update to 5.4.3.
* gnu/packages/python.scm (python-psutil): Update to 5.4.3.
[properties]: Declare python2 variant.
(python2-psutil): Propagate PYTHON2-ENUM34.
2018-02-28 14:17:55 +01:00
Marius Bakke 836de07a47
gnu: python-wrapt: Update to 1.10.11.
* gnu/packages/python.scm (python-wrapt): Update to 1.10.11.
2018-02-28 13:59:03 +01:00
Marius Bakke f8a4547c29
gnu: python-oslo.log: Update to 3.36.0.
* gnu/packages/openstack.scm (python-oslo.log): Update to 3.36.0.
[source](uri): Use PYPI-URI.
[arguments]: Remove.
[propagated-inputs]: Add PYTHON-DATEUTIL, PYTHON-MONOTONIC, PYTHON-PBR and
PYTHON-PYINOTIFY.
[native-inputs]: Remove PYTHON-BABEL, PYTHON-ISO8601 and PYTHON-PBR.  Add
PYTHON-SUBUNIT, PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
2018-02-28 13:59:03 +01:00
Marius Bakke db3e631db8
gnu: python-monotonic: Update to 1.4.
* gnu/packages/time.scm (python-monotonic): Update to 1.4.
[source]: Use PYPI-URI.
[arguments]: Explicitly disable tests.
2018-02-28 13:59:03 +01:00
Marius Bakke 2441239842
gnu: python-msgpack: Run the tests.
* gnu/packages/python.scm (python-msgpack)[arguments]: Add #:modules.  Replace
CHECK-PHASE with pytest invocation.
[native-inputs]: Add PYTHON-PYTEST.
2018-02-28 13:59:03 +01:00
Marius Bakke 0075644662
gnu: python-msgpack: Update to 0.5.6.
* gnu/packages/python.scm (python-msgpack): Update to 0.5.6.
[source, home-page]: Adjust to msgpack-python->msgpack rename.
2018-02-28 13:59:02 +01:00
Marius Bakke caf3713ad5
gnu: python-oslo.serialization: Update to 2.24.0.
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.24.0.
[arguments]: Remove field.
[propagated-inputs]: Remove PYTHON-ISO8601 and PYTHON-SIMPLEJSON.  Add
PYTHON-MSGPACK.
[native-inputs]: Remove PYTHON-BABEL.
[properties]: New field.
(python2-oslo.serialization)[native-inputs]: Add PYTHON2-IPADDRESS.
2018-02-28 13:59:02 +01:00
Marius Bakke 32bb0c617b
gnu: python-oslo.context: Update to 2.20.0.
* gnu/packages/openstack.scm (python-oslo.context): Update to 2.20.0.
[propagated-inputs]: Add PYTHON-DEBTCOLLECTOR and PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR, PYTHON-COVERAGE, PYTHON-MOCK,
PYTHON-OS-CLIENT-CONFIG, PYTHON-OSLOSPHINX and PYTHON-SPHINX.  Add
PYTHON-FIXTURES.
2018-02-28 13:59:02 +01:00
Marius Bakke 24f4400aa6
gnu: Add python-pyinotify.
* gnu/packages/python.scm (python-pyinotify, python2-pyinotify): New
variables.
2018-02-28 13:59:02 +01:00
Marius Bakke b51fbd6d6e
gnu: python-oslo.utils: Update to 3.35.0.
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.35.0.
[source](snippet): Remove.
[propagated-inputs]: Add PYTHON-PYPARSING.
[native-inputs]: Add PYTHON-DDT, PYTHON-FIXTURES, PYTHON-TESTREPOSITORY and
PYTHON-TESTTOOLS.  Remove PYTHON-MOX3.
2018-02-28 13:59:02 +01:00
Marius Bakke 9e4546a2be
gnu: python-oslo.config: Update to 5.2.0.
* gnu/packages/openstack.scm (python-oslo.config): Update to 5.2.0.
[source](uri): Use PYPI-URI.
[arguments]: Remove field.
[propagated-inputs]: Add PYTHON-DEBTCOLLECTOR, PYTHON-OSLO.I18N, PYTHON-PBR,
PYTHON-RFC3986 and PYTHON-PYYAML.
[native-inputs]: Remove PYTHON-PBR and PYTHON-I18N.  Add PYTHON-BANDIT,
PYTHON-COVERAGE, PYTHON-OPENSTACKDOCSTHEME, PYTHON-RENO, PYTHON-SPHINX-1.6,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
2018-02-28 13:59:02 +01:00
Marius Bakke a2803e206b
gnu: python-debtcollector: Update to 1.19.0.
* gnu/packages/openstack.scm (python-debtcollector): Update to 1.19.0.
[arguments]: Remove field.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR and PYTHON-BABEL.  Add PYTHON-SUBUNIT,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
[properties]: Declare python2 variant.
(python2-debtcollector)[propaged-inputs]: Add PYTHON-FUNCSIGS.
2018-02-28 13:59:02 +01:00
Marius Bakke c822e880fe
gnu: python-oslo.i18n: Update to 3.19.0.
* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.19.0.
[arguments]: Remove field.
2018-02-28 13:59:01 +01:00
Marius Bakke 231bd07e8d
gnu: python-bandit: Update to 1.4.0.
* gnu/packages/openstack.scm (python-bandit): Update to 1.4.0.
[source](uri): Use PYPI-URI.
[arguments]: Run CHECK-PHASE after INSTALL-PHASE.
[propagated-inputs]: Remove PYTHON-APPDIRS.  Add PYTHON-GITPYTHON.
[native-inputs]: Remove PYTHON-PBR.  Add PYTHON-BEAUTIFULSOUP4,
PYTHON-OSLOTEST and PYTHON-SUBUNIT.
2018-02-28 13:59:01 +01:00
Marius Bakke 8e6177204e
gnu: Add python-gitpython.
* gnu/packages/version-control.scm (python-gitpython, python2-gitpython): New
public variables.
2018-02-28 13:59:01 +01:00
Marius Bakke ea4be20af0
gnu: Add python-gitdb.
* gnu/packages/version-control.scm (python-gitdb, python2-gitdb): New public
variables.
2018-02-28 13:59:01 +01:00
Marius Bakke 1cccdca231
gnu: python-stevedore: Update to 1.28.0.
* gnu/packages/openstack.scm (python-stevedore): Update to 1.28.0.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR, PYTHON-DISCOVER, PYTHON-DOCUTILS,
PYTHON-OSLOSPHINX and PYTHON-OSLOTEST.  Replace PYTHON-SPHINX with
PYTHON-SPHINX-1.6.
2018-02-28 13:59:01 +01:00
Marius Bakke 3e3302acc5
gnu: Add python-rfc3986.
* gnu/packages/python.scm (python-rfc3986, python2-rfc3986): New public
variables.
2018-02-28 13:59:01 +01:00
Marius Bakke 79d9effa51
gnu: python2-stevedore: Enable tests.
* gnu/packages/openstack.scm (python-stevedore)[properties]: Remove.
(python2-stevedore)[arguments]: Remove.
2018-02-28 13:59:00 +01:00
Marius Bakke 8fa28808a6
gnu: python-oslo.context: Enable tests.
* gnu/packages/openstack.scm (python-oslo.context)[arguments]: Remove.
2018-02-28 13:59:00 +01:00
Marius Bakke 39033c8f57
gnu: python2-bandit: Enable tests.
* gnu/packages/openstack.scm (python-bandit)[properties]: Remove.
(python2-bandit): Don't use STRIP-PYTHON2-VARIANT.
2018-02-28 13:59:00 +01:00
Marius Bakke 0ab4c39285
gnu: python2-swiftclient: Enable tests.
* gnu/packages/openstack.scm (python-swiftclient)[properties]: Declare python2
variant.
(python2-swiftclient): Use STRIP-PYTHON2-VARIANT.
[propagated-inputs]: Remove PYTHON2-REQUESTS.
[arguments]: Remove.
[native-inputs]: Delete.
2018-02-28 13:59:00 +01:00
Marius Bakke b39667cdcb
gnu: python-mox3: Update to 0.24.0.
* gnu/packages/openstack.scm (python-mox3): Update to 0.24.0.
[source](patches): New field.
[arguments]: Remove.
[native-inputs]: Add PYTHON-OPENSTACKDOCSTHEME and PYTHON-SUBUNIT.  Replace
PYTHON-SPHINX with PYTHON-SPHINX-1.6.  Move PYTHON-PBR and PYTHON-FIXTURES ...
[propagated-inputs]: ... here.  New field.
[description]: Don't mention explicit Python versions.
* gnu/packages/patches/python-mox3-python3.6-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-02-28 13:59:00 +01:00
Marius Bakke 7a565dc9ec
gnu: Add python-openstackdocstheme.
* gnu/packages/openstack.scm (python-openstackdocstheme,
python2-openstackdocstheme): New public variables.
2018-02-28 13:59:00 +01:00
Marius Bakke 3719d0edf2
gnu: python-sphinx@1.6: Add python2 variant.
* gnu/packages/python.scm (python-sphinx-1.6)[properties]: Declare python2 variant.
(python2-sphinx-1.6): New public variable.
2018-02-28 13:58:43 +01:00
Marius Bakke 9c77852e19
gnu: python-fixtures: Update to 3.0.0.
* gnu/packages/check.scm (python-fixtures-bootstrap): Update to 3.0.0.
2018-02-28 13:58:43 +01:00
Marius Bakke d2ae66b756
gnu: python-reno: Update to 2.7.0.
* gnu/packages/openstack.scm (python-reno): Update to 2.7.0.
[propagated-inputs]: Remove PYTHON-BABEL.  Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR and PYTHON-OSLOTEST.  Add PYTHON-DOCUTILS
and PYTHON-SPHINX.
2018-02-28 13:58:43 +01:00
Marius Bakke be3f88c29c
gnu: python-oslotest: Update to 3.2.0.
* gnu/packages/openstack.scm (python-oslotest): Update to 3.2.0.
[source](uri): Use PYPI-URI.
[native-inputs]: Move PYTHON-OS-CLIENT-CONFIG, PYTHON-SIX, PYTHON-SUBUNIT,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS ...
[propagated-inputs]: ... here.
[properties]: Remove field.
(python2-oslotest)[arguments]: Remove.
2018-02-28 13:58:43 +01:00
Marius Bakke ae565a9a6d
gnu: python-testscenarios: Update to 0.5.0.
* gnu/packages/check.scm (python-testscenarios-bootstrap): Update to 0.5.0.
[source](uri): Use PYPI-URI.
[arguments]: Replace CHECK-PHASE.
[propagated-inputs]: Add PYTHON-PBR-MINIMAL.
(python-testscenarios)[propagated-inputs]: Add PYTHON-PBR.
2018-02-28 13:58:43 +01:00
Marius Bakke 8b93f7e437
gnu: python-testtools: Update to 2.3.0.
* gnu/packages/check.scm (python-testtools-bootstrap,
python2-testtools-bootstrap): New public variables.
(python-testtools): Inherit.
[arguments]: Remove old.  Replace CHECK-PHASE with custom command.
[propagated-inputs]: Add PYTHON-FIXTURES, PYTHON-PBR, PYTHON-SIX,
PYTHON-TRACEBACK2 and PYTHON-UNITTEST2.
[native-inputs]: Add PYTHON-TESTSCENARIOS-BOOTSTRAP.
(python-testscenarios-bootstrap, python2-testscenarios-bootstrap): New public
variables.
(python-testscenarios): Adjust accordingly.
[propagated-inputs]: Replace PYTHON-TESTTOOLS with PYTHON-TESTTOOLS-BOOTSTRAP.
(python-subunit-bootstrap, python2-subunit-bootstrap): New public variables.
(python-subunit): Inherit.
(python-fixtures-bootstrap)[native-inputs]: Replace PYTHON-TESTTOOLS with
PYTHON-TESTTOOLS-BOOTSTRAP.
(python-testrepository-bootstrap)[native-inputs]: Replace PYTHON-SUBUNIT and
PYTHON-TESTTOOLS with PYTHON-SUBUNIT-BOOTSTRAP and PYTHON-TESTTOOLS-BOOTSTRAP.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace
PYTHON-TESTSCENARIOS and PYTHON-TESTTOOLS with
PYTHON-TESTSCENARIOS-BOOTSTRAP and PYTHON-TESTTOOLS-BOOTSTRAP.
2018-02-28 13:58:43 +01:00
Marius Bakke 881ed3f868
gnu: python-extras: Update to 1.0.0.
* gnu/packages/python.scm (python-extras): Update to 1.0.0.
[source](uri): Use PYPI-URI.
2018-02-28 13:58:43 +01:00
Marius Bakke bc69104a44
gnu: python-testresources: Update to 2.0.1.
* gnu/packages/check.scm (python-testresources-bootstrap,
python2-testresources-bootstrap): New public variables.
(python-testresources): Adjust accordingly.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Add PYTHON-FIXTURES and PYTHON-TESTTOOLS.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace
PYTHON-TESTRESOURCES with PYTHON-TESTRESOURCES-BOOTSTRAP.
2018-02-28 13:58:42 +01:00
Marius Bakke 151f32a74b
gnu: python-subunit: Update to 1.2.0.
* gnu/packages/check.scm (python-subunit): Update to 1.2.0.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Remove PYTHON-MIMEPARSE.  Add PYTHON-TESTTOOLS.
[native-inputs]: Add PYTHON-FIXTURES and PYTHON-TESTSCENARIOS.
2018-02-28 13:58:42 +01:00
Marius Bakke 335c9e3902
gnu: python-fixtures: Propagate python-pbr.
* gnu/packages/check.scm (python-fixtures-bootstrap,
python2-fixtures-bootstrap, python-testrepository-bootstrap,
python2-testrepository-bootstrap): New public variables.
(python-fixtures): Adjust accordingly.
(python-testrepository): Likewise.
[native-inputs]: Remove PYTHON-PBR-MINIMAL.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace PYTHON-FIXTURES
and PYTHON-TESTREPOSITORY WITH PYTHON-FIXTURES-BOOTSTRAP and
PYTHON-TESTREPOSITORY-BOOTSTRAP.
2018-02-28 13:58:42 +01:00
Efraim Flashner bd041e7fd3
gnu: dionysus: Update to 1.4.0.
* gnu/packages/maths.scm (dionysus): Update to 1.4.0.
2018-02-28 14:42:36 +02:00
Tobias Geerinckx-Rice 971d232b27
gnu: r-httpuv: Update to 1.3.6.
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.
2018-02-28 04:13:19 +01:00
Tobias Geerinckx-Rice 1143450c14
gnu: dblatex: Update to 0.3.10.
* gnu/packages/docbook.scm (dblatex): Update to 0.3.10.
[source]: Remove patch.
* gnu/packages/patches/dblatex-remove-multirow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-28 04:13:19 +01:00
Tobias Geerinckx-Rice bf5e7189dc
gnu: perl-yaml-libyaml: Update to 0.69.
* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.69.
2018-02-28 04:13:18 +01:00
Tobias Geerinckx-Rice 3199acb2cf
gnu: perl-yaml: Update to 1.24.
* gnu/packages/perl.scm (perl-yaml): Update to 1.24.
[source]: Update origin URI.
2018-02-28 04:13:18 +01:00
Tobias Geerinckx-Rice 047cd2be07
gnu: perl-variable-magic: Update to 0.62.
* gnu/packages/perl.scm (perl-variable-magic): Update to 0.62.
2018-02-28 04:13:17 +01:00
Tobias Geerinckx-Rice 91b73dba9d
gnu: perl-throwable: Update to 0.200013.
* gnu/packages/perl.scm (perl-throwable): Update to 0.200013.
2018-02-28 04:13:17 +01:00
Tobias Geerinckx-Rice 1d4e6e1756
gnu: perl-text-diff: Update to 1.45.
* gnu/packages/perl.scm (perl-text-diff): Update to 1.45.
2018-02-28 04:13:16 +01:00
Tobias Geerinckx-Rice b0821f6b8d
gnu: perl-path-class: Update to 0.37.
* gnu/packages/perl.scm (perl-path-class): Update to 0.37.
2018-02-28 04:13:16 +01:00
Tobias Geerinckx-Rice 24397ab1a3
gnu: perl-list-moreutils-xs: Update to 0.428.
* gnu/packages/perl.scm (perl-list-moreutils-xs): Update to 0.428.
2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice 89badfbcc3
gnu: perl-import-into: Update to 1.002005.
* gnu/packages/perl.scm (perl-import-into): Update to 1.002005.
[source]: Update origin URI.
2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice a32f136547
gnu: perl-extutils-installpaths: Update to 0.011.
* gnu/packages/perl.scm (perl-extutils-installpaths): Update to 0.011.
2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice 63651b8057
gnu: perl-devel-globaldestruction: Update to 0.14.
* gnu/packages/perl.scm (perl-devel-globaldestruction): Update to 0.14.
2018-02-28 04:13:14 +01:00
Tobias Geerinckx-Rice 92a37fd224
gnu: perl-config-autoconf: Update to 0.315.
* gnu/packages/perl.scm (perl-config-autoconf): Update to 0.315.
2018-02-28 04:13:14 +01:00
Tobias Geerinckx-Rice e87ab2e895
gnu: perl-data-optlist: Update to 0.110.
* gnu/packages/perl.scm (perl-data-optlist): Update to 0.110.
2018-02-28 04:13:13 +01:00
Ludovic Courtès 29d37e999c
gnu: make-bootstrap: Build grep without PCRE support.
Partly fixes <https://bugs.gnu.org/24841>.
Reported by Chris Marusich <cmmarusich@gmail.com>.

This fixes cross-compilation of the statically-linked grep.

* gnu/packages/make-bootstrap.scm (%static-inputs): Add 'inputs' field
for grep.
2018-02-28 00:33:48 +01:00
Tobias Geerinckx-Rice 7349fed591
gnu: perl-x11-xcb: Update to 0.17.
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.17.
2018-02-27 16:50:00 +01:00
Tobias Geerinckx-Rice fa964e96e6
gnu: perl-xml-sax-base: Update to 1.09.
* gnu/packages/xml.scm (perl-xml-sax-base): Update to 1.09.
2018-02-27 16:50:00 +01:00
Tobias Geerinckx-Rice 5cacd3144e
gnu: tig: Update to 2.3.3.
* gnu/packages/version-control.scm (tig): Update to 2.3.3.
[arguments]: Substitute INVOKE for SYSTEM*.
2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 4886d5b23c
gnu: spin2cpp: Update to 3.6.4.
* gnu/packages/embedded.scm (spin2cpp): Update to 3.6.4.
2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 7da5db8e45
gnu: godot: Update to 3.0.1.
* gnu/packages/game-development.scm (godot): Update to 3.0.1.
[arguments]: End phases with #t and remove redundant MKDIR-P.
2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 130acf72f7
gnu: love: Fix build with luajit@2.1.0-beta3.
* gnu/packages/game-development.scm (love)[source]: Add snippet fixing Lua version detection.
2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice d5d7d26df7
gnu: perl-gd: Update to 2.68.
* gnu/packages/gd.scm (perl-gd): Update to 2.68.
[source]: Remove obsolete patch.
[native-inputs]: Remove perl-module-build.
[inputs]: Use canonical package names and order alphabetically.
[arguments]: Replace #:module-build-flags with fewer #:make-maker-flags,
enable #:tests?, and remove ‘clear-autogenerated-files’ phase.
* gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 2504fd3794
gnu: xfburn: Update to 0.5.5.
* gnu/packages/xfce.scm (xfburn): Update to 0.5.5.
2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice c26d74dde6
gnu: phonon: Update to 4.10.0.
* gnu/packages/kde-frameworks.scm (phonon): Update to 4.10.0.
2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 9e9a211f9d
gnu: soxr: Update to 0.1.3.
* gnu/packages/audio.scm (soxr): Update to 0.1.3.
2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 713b519eaa
gnu: fluidsynth: Update to 1.1.10.
* gnu/packages/audio.scm (fluidsynth): Update to 1.1.10.
2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 0c548d9875
gnu: youtube-dl: Update to 2018.02.26.
* gnu/packages/video.scm (youtube-dl): Update to 2018.02.26.
2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 4f3506a48a
gnu: thermald: Update to 1.7.1.
* gnu/packages/admin.scm (thermald): Update to 1.7.1.
[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 63f931cf82
gnu: gcab: Update to 1.1.
* gnu/packages/package-management.scm (gcab): Update to 1.1.
[source]: Remove git dependency in a snippet.
2018-02-27 16:49:57 +01:00
Kei Kebreau 36d48a536e
gnu: mbedtls-apache: Fix upstream typo.
A typo was introduced in version 2.7.0 that caused the hiawatha package to
fail to build. See https://github.com/ARMmbed/mbedtls/pull/1362.

* gnu/packages/tls.scm (mbedtls-apache)[source]: Add snippet to fix typo.
2018-02-27 10:33:59 -05:00
Ludovic Courtès 87b6305e72
gnu: polkit: Fix 'invoke' call.
* gnu/packages/polkit.scm (polkit)[arguments] <'install>: Add 'apply'.
Fixes a regression introduced in 3c4bbb4c52.
2018-02-27 09:22:24 +01:00
Chris Marusich a1df45e904
gnu: commencement: Add commentary regarding grafts.
* gnu/packages/commencement.scm: Add comments that were originally
  included only in the Git commit message of
  f00b85ff8d.

Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
2018-02-27 05:29:37 +01:00
Mark H Weaver 701cfb9b33
gnu: linux-libre: Update to 4.15.6.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.6.
(%linux-libre-hash): Update hash.
2018-02-26 21:32:34 -05:00
Mark H Weaver cd2bcc9bda
gnu: linux-libre@4.14: Update to 4.14.22.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.22.
(%linux-libre-4.14-hash): Update hash.
2018-02-26 21:31:46 -05:00
Mark H Weaver 5de50beda3
gnu: linux-libre@4.9: Update to 4.9.84.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.84.
2018-02-26 21:31:07 -05:00
Mark H Weaver 26204b81f9
gnu: linux-libre@4.4: Update to 4.4.118.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.118.
2018-02-26 21:30:16 -05:00
Nicolas Goaziou 7ad05d8526
gnu: emacs-org, emacs-org-contrib: Update to 20180226
* gnu/packages/emacs.scm (emacs-org):
(emacs-org-contrib): Update to 20180226, aka Org 9.1.7.
2018-02-27 00:32:06 +01:00
Leo Famulari fcbb8461a4
gnu: Add go@1.10.
Building Go 1.10 with the Go 1.4 bootstrap, Thread Sanitizer from GCC 5
finds a data race during the the test suite of Go 1.10. With GCC 6, the
race doesn't seem to be present.

.##### ../misc/cgo/testsanitizers
--- FAIL: TestShared (0.03s)
    --- FAIL: TestShared/tsan_shared (2.54s)
        cshared_test.go:71: `/tmp/guix-build-go-1.10.drv-0/TestShared367937240/tsan_shared` exited with exit status 66
                ==================
                WARNING: ThreadSanitizer: data race (pid=28778)
                  Write of size 8 at 0x7ffff5495c30 by thread T1:
                    #0 pthread_attr_getstacksize <null> (tsan_shared+0x00000041be82)
                    #1 x_cgo_init <null> (libtsan_shared.so+0x00000008aeaf)
                    #2 runtime.rt0_go /tmp/guix-build-go-1.10.drv-0/go/src/runtime/asm_amd64.s:199 (libtsan_shared.so+0x000000081586)

                  Previous write of size 8 at 0x7ffff5495c30 by main thread:
                    #0 <null> <null> (0x000000000001)

                  Location is stack of thread T1.

                  Thread T1 (tid=28786, running) created by main thread at:
                    #0 pthread_create <null> (tsan_shared+0x00000040c794)
                    #1 _cgo_try_pthread_create <null> (libtsan_shared.so+0x00000008ad70)
                    #2 x_cgo_sys_thread_create <null> (libtsan_shared.so+0x00000008ab12)
                    #3 _rt0_amd64_lib /tmp/guix-build-go-1.10.drv-0/go/src/runtime/asm_amd64.s:56 (libtsan_shared.so+0x0000000813b6)

                SUMMARY: ThreadSanitizer: data race ??:0 __interceptor_pthread_attr_getstacksize

* gnu/packages/golang.scm (go-1.10): New variable.
(go-1.4)[native-inputs]: Use gcc:lib version 6.
2018-02-26 17:34:14 -05:00
Leo Famulari 13d9794d8f
gnu: Add RawTherapee.
* gnu/packages/photo.scm (rawtherapee): New variable.
2018-02-26 17:05:46 -05:00
Leo Famulari bc806b0c12
gnu: Add libiptcdata.
* gnu/packages/image.scm (libiptcdata): New variable.
2018-02-26 17:05:46 -05:00
Roel Janssen 5815e3bc94
gnu: Add emacs-nov.
* gnu/packages/emacs.scm (emacs-nov): New variable.
2018-02-26 22:27:36 +01:00
Roel Janssen c74b8b41cf
gnu: Add emacs-esxml.
* gnu/packages/emacs.scm (emacs-esxml): New variable.
2018-02-26 22:27:31 +01:00
Tobias Geerinckx-Rice d504de2655
gnu: assword: Update to 0.11.
* gnu/packages/password-utils.scm (assword): Update to 0.11.
2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice fc38e317cd
gnu: python-cffi: Update phase style.
* gnu/packages/libffi.scm (python-cffi)[arguments]: Substitute INVOKE
for SYSTEM*, end phases with #t, and remove unneeded bits from the
‘install-doc’ phase.
2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice b737530569
gnu: python-cffi: Update to 1.11.4.
* gnu/packages/libffi.scm (python-cffi): Update to 1.11.4.
2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice 4e501d0642
gnu: perl-scalar-list-utils: Update to 1.50.
* gnu/packages/perl.scm (perl-scalar-list-utils): Update to 1.50.
2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice 0ae079ec2a
gnu: Add nghttp2.
* gnu/packages/web.scm (nghttp2): New public variable.
2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 9de33cc726
gnu: ruby-ffi: Update to 1.9.22.
* gnu/packages/libffi.scm (ruby-ffi): Update to 1.9.22.
2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 4ff3484f1e
gnu: libpsl: Update to 0.20.0.
* gnu/packages/web.scm (libpsl): Update to 0.20.0.
2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 57e7d7486b
gnu: Use HTTPS for supported freedesktop.org home pages.
* gnu/packages/fontutils.scm (fontconfig)[home-page]: Use HTTPS.
* gnu/packages/freedesktop.scm (python-pyxdg, accountsservice)
(modem-manager, telepathy-mission-control, telepathy-mission-control)
(colord-gtk, desktop-file-utils)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (libspectre)[home-page]: Likewise.
* gnu/packages/glib.scm (dbus, dbus-glib, telepathy-glib)[home-page]:
Likewise.
* gnu/packages/gnome.scm (shared-mime-info, hicolor-icon-theme)
(libxklavier, colord, upower)[home-page]: Likewise.
* gnu/packages/gstreamer.scm (orc, python-gst)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (sound-theme-freedesktop)[home-page]:
Likewise.
* gnu/packages/libreoffice.scm (libexttextcat)[home-page]: Likewise.
* gnu/packages/polkit.scm (polkit-gnome, polkit-gnome)[home-page]:
Likewise.
* gnu/packages/pulseaudio.scm (pavucontrol)[home-page]: Likewise.
* gnu/packages/python.scm (python-dbus)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (startup-notification)[home-page]: Likewise.
2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 3c4bbb4c52
gnu: polkit: Update phase & snippet style.
* gnu/packages/polkit.scm (polkit)[source]: End snippet with #t.
[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 73a3e98f01
gnu: perl-xml-libxslt: Update to 1.96.
* gnu/packages/xml.scm (perl-xml-libxslt): Update to 1.96.
2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 12505baed9
gnu: perl-net-smtp-ssl: Update to 1.04.
* gnu/packages/web.scm (perl-net-smtp-ssl): Update to 1.04.
2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 6f8d1f7274
gnu: perl-http-server-simple: Update to 0.52.
* gnu/packages/web.scm (perl-http-server-simple): Update to 0.52.
2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 24a300b1bd
gnu: dvdstyler: Remove hard-coded version string.
* gnu/packages/cdrom.scm (dvdstyler)[arguments]: Remove a hard-coded
version string from the docbook-xsl search path.
2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 74b977d725
gnu: libdvbpsi: Update to 1.3.2.
* gnu/packages/video.scm (libdvbpsi): Update to 1.3.2.
2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 383ad03e83
gnu: tinc: Update to 1.0.33.
* gnu/packages/vpn.scm (tinc): Update to 1.0.33.
2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 7ed1abfa81
gnu: gource: Update to 0.48.
* gnu/packages/version-control.scm (gource): Update to 0.48.
2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice d5a352937a
gnu: youtube-dl: Update to 2018.02.22.
* gnu/packages/video.scm (youtube-dl): Update to 2018.02.22.
2018-02-26 20:13:07 +01:00
Tobias Geerinckx-Rice 54d82c81d5
gnu: libfilezilla: Update to 0.12.1.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.1.
2018-02-26 20:13:07 +01:00
Ludovic Courtès ecbea1bcb1
gnu: automake: Add 1.16.
* gnu/packages/autotools.scm (automake-1.16): New variable.
2018-02-26 19:47:54 +01:00
Marius Bakke cb723be5b9
gnu: python-scandir: Run the test suite.
* gnu/packages/python.scm (python-scandir)[arguments]: Replace CHECK-PHASE.
2018-02-26 05:03:22 +01:00
Marius Bakke 71a2d4176b
gnu: python-scandir: Update to 1.7.
* gnu/packages/python.scm (python-scandir): Update to 1.7.
[description]: Mention that the Python3 variant is obsolete.
2018-02-26 05:01:16 +01:00
Marius Bakke ea3f45a5a0
gnu: python2-pathlib2: Update to 2.3.0.
* gnu/packages/python.scm (python2-pathlib2): Update to 2.3.0.
[propagated-inputs]: Add PYTHON2-SCANDIR.
2018-02-26 04:54:33 +01:00
Marius Bakke f160557b95
gnu: python-ipython: Update to 5.5.0.
* gnu/packages/python.scm (python-ipython): Update to 5.5.0.
2018-02-26 04:50:30 +01:00
Marius Bakke ff856cfdcc
gnu: python-pickleshare: Run the tests.
* gnu/packages/databases.scm (python-pickleshare)[arguments]: Replace CHECK-PHASE.
[native-inputs]: Add PYTHON-PYTEST.
2018-02-26 04:50:30 +01:00
Marius Bakke 76397e12ad
gnu: python2-pathlib2: Propagate python2-six.
* gnu/packages/python.scm (python2-pathlib2)[native-inputs]: Move to ...
[propagated-inputs] ... here.
2018-02-26 04:50:29 +01:00
Marius Bakke ed519b3c1f
gnu: python-pickleshare: Update to 0.7.4.
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.4.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Remove.
[properties]: Delay python2 variant.
(python2-pickleshare)[propagated-inputs]: Add PYTHON2-PATHLIB2.
2018-02-26 04:49:52 +01:00
Marius Bakke eddb9dacd2
gnu: behave: Update to 1.2.6.
* gnu/packages/check.scm (behave): Update to 1.2.6.
[source](uri): Adjust file extension.
[native-inputs]: Add PYTHON-PATHPY and PYTHON-PYTEST.
2018-02-26 03:05:58 +01:00
Marius Bakke b8509387d1
gnu: python-pathpy: Update to 11.0.
* gnu/packages/python.scm (python-pathpy): Update to 11.0.
[source](uri): Use PYPI-URI.
[outputs]: Remove field.
[arguments]: Set #:tests? #f.  Remove #:phases.
2018-02-26 03:01:48 +01:00
Marius Bakke 557f8f212e
gnu: python-parse-type: Update to 0.4.2.
* gnu/packages/python.scm (python-parse-type): Update to 0.4.2.
[source](uri): Use PYPI-URI.
[arguments]: Remove field.
2018-02-26 02:42:17 +01:00
Marius Bakke 2115bde302
gnu: python-parse: Update to 1.8.2.
* gnu/packages/patches/python-parse-too-many-fields.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-parse): Update to 1.8.2.
[source](patches): Remove.
[arguments]: Use INVOKE instead of SYSTEM*.
2018-02-26 02:39:15 +01:00
ng0 f58764d8ed
gnu: neomutt: Update to 20180223.
* gnu/packages/mail.scm (neomutt): Update to 20180223.
[native-inputs]: Use 'docbook-xml-4.2'.
[arguments]: Remove 'fix-docbook' phases.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 02:24:34 +01:00
Alex ter Weele f61682e7ea
gnu: Add agda.
* gnu/packages/agda.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add adga.scm.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:42:35 +01:00
Alex ter Weele 7df5669f39
gnu: Add ghc-uri-encode.
* gnu/packages/haskell-web.scm (ghc-uri-encode): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:36:16 +01:00
Alex ter Weele abfec9b375
gnu: ghc-hashtables: Allow newer version of vector.
* gnu/packages/haskell.scm (ghc-hashtables)[arguments]: Allow newer version of
  vector.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:31:05 +01:00
Alex ter Weele 9f29ecc1b1
gnu: ghc-edit-distance: Allow newer version of QuickCheck.
* gnu/packages/haskell.scm (ghc-edit-distance)[arguments]: Allow running tests
  with newer version of QuickCheck.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:29:54 +01:00
Alex Vong e5f9540691
gnu: emacs-ahungry-theme: Update to 1.10.0.
* gnu/packages/emacs.scm (emacs-ahungry-theme): Update to 1.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:21:01 +01:00
Andy Patterson 543cf6fd37
gnu: cl-bordeaux-threads: Update to commit 354abb0a.
This commit includes a fix which makes the package compatible asdf 3.3.1.

* gnu/packages/lisp.scm (sbcl-bordeaux-threads): Update to commit 354abb0a.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:15:23 +01:00
Andy Patterson 04ab38b7ee
gnu: ccl: Update to 1.11.5.
* gnu/packages/lisp.scm (ccl): Update to 1.11.5.
[inputs]: Update ccl to its new hosting location.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:15:12 +01:00
Efraim Flashner 1462b45657
gnu: enca: Update to 1.19.
* gnu/packages/textutils.scm (enca): Update to 1.19.
[inputs]: Remove recode.
[arguments]: Allow parallel tests.
2018-02-25 20:47:55 +02:00