b8605720ac
gnu: linux-libre@4.14: Update to 4.14.25.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.25.
(%linux-libre-4.14-hash): Update hash.
2018-03-09 20:22:35 -05:00
8d5c14edf5
linux-initrd: Skip initrd module check when 'modules.alias' can't be found.
...
Fixes <https://bugs.gnu.org/30760 >.
Reported by Tomáš Čech <sleep_walker@gnu.org>.
* gnu/system/linux-initrd.scm (check-device-initrd-modules): Call
'known-module-aliases' and catch 'system-error around it. Pass it to
'matching-modules'.
2018-03-10 00:15:59 +01:00
464f544739
gnu: 'autoconf-wrapper' is no longer a procedure.
...
Fixes <https://bugs.gnu.org/30710 >.
Suggested by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.
* gnu/packages/autotools.scm (autoconf-wrapper): Rename to...
(make-autoconf-wrapper): ... this. Add 'properties' field.
(autoconf-wrapper): New variable.
* gnu/packages/gnunet.scm (guile-gnunet): Adjust accordingly.
* gnu/packages/gnupg.scm (signing-party): Likewise.
* gnu/packages/guile.scm (guile-ics, guile-bash): Likewise.
* gnu/packages/libevent.scm (libuv): Likewise.
* gnu/packages/logging.scm (glog): Likewise.
* gnu/packages/mail.scm (libetpan): Likewise.
* gnu/packages/mate.scm (mate-icon-theme-faenza)
(mate-screensaver): Likewise.
* gnu/packages/package-management.scm (guix): Likewise.
* gnu/packages/sawfish.scm (librep): Likewise.
* gnu/packages/video.scm (motion): Likewise.
* gnu/packages/zile.scm (zile-on-guile): Likewise.
2018-03-09 23:24:34 +01:00
ab9ad13802
gnu: linux-libre@4.1: Update to 4.1.50.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.50.
2018-03-09 16:31:32 -05:00
16bd3291a4
gnu: Update python-django-gravatar2.
...
* gnu/packages/django.scm (python-django-gravatar2)[version]: Update from
1.4.0 to 1.4.2.
[source]: Update sha256 hash.
[arguments]: Disable the tests, as the django project for the tests is
missing.
2018-03-09 18:18:48 +00:00
da90f337b3
gnu: Update python-django-filter to 1.1.0.
...
* gnu/packages/django.scm (python-django-filter)[version]: Update from 0.14.0
to 1.1.0.
[source]: Update sha256 hash.
[native-inputs]: Add python-djangorestframework and
python-django-crispy-forms as native inputs, as they are used in the test
suite.
2018-03-09 18:18:48 +00:00
cc534f0c71
gnu: Add python-django-crispy-forms.
...
* gnu/packages/django.scm (python-django-crispy-forms): New variable.
2018-03-09 18:18:48 +00:00
d5f56e9089
gnu: Add python-djangorestframework.
...
* gnu/packages/django.scm (python-djangorestframework): New variable.
2018-03-09 18:18:44 +00:00
a9079b4880
tests: mail: Add test for dovecot.
...
* gnu/tests/mail.scm (%dovecot-os, %test-dovecot): New variables.
(run-dovecot-test): New procedure.
2018-03-09 17:24:45 +03:00
6310dff1dc
services: dovecot: Copy dovecot.conf to /etc/dovecot.
...
Many Dovecot utilities compiled with assumption of ‘/etc/dovecot/dovecot.conf’
existence.
* gnu/services/mail.scm (dovecot-shepherd-service): Move config generation.
Invoke ‘dovecot’ without ‘-c’ flag.
(%dovecot-activation): Copy ‘dovecot.conf’ to ‘/etc/dovecot’.
(dovecot-service-type): Make ‘%dovecot-activation’ non-constant.
2018-03-09 17:02:31 +03:00
a539ad867d
gnu: r-rhdf5lib: Make build reproducible.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp
and host system kernel version.
2018-03-09 11:40:59 +01:00
d8f46d5234
gnu: hdf5: Do not record the build-time kernel version.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent
the kernel version on the build node from affecting the output.
2018-03-09 11:20:22 +01:00
1b5905fe68
gnu: r-fnn: Remove duplicate definition.
...
* gnu/packages/cran.scm (r-fnn)[home-page]: Use HTTPS.
* gnu/packages/statistics.scm (r-fnn): Remove.
2018-03-08 23:38:41 +01:00
22a0c65969
gnu: Add r-phangorn.
...
* gnu/packages/bioinformatics.scm (r-phangorn): New variable.
2018-03-08 23:31:56 +01:00
be815dbdda
gnu: Add r-smoother.
...
* gnu/packages/cran.scm (r-smoother): New variable.
2018-03-08 23:31:56 +01:00
d10b0952ce
gnu: Add r-fnn.
...
* gnu/packages/cran.scm (r-fnn): New variable.
2018-03-08 23:31:56 +01:00
661bb51e66
gnu: Add r-vim.
...
* gnu/packages/cran.scm (r-vim): New variable.
2018-03-08 23:31:56 +01:00
fc784b6672
gnu: Add r-prroc.
...
* gnu/packages/cran.scm (r-prroc): New variable.
2018-03-08 23:31:56 +01:00
94e46cabc1
gnu: Add r-abind.
...
* gnu/packages/cran.scm (r-abind): New variable.
2018-03-08 23:31:56 +01:00
3a563a410a
gnu: Add r-sqldf.
...
* gnu/packages/cran.scm (r-sqldf): New variable.
2018-03-08 23:31:56 +01:00
3dab50d92a
gnu: Add r-gsubfn.
...
* gnu/packages/cran.scm (r-gsubfn): New variable.
2018-03-08 23:31:56 +01:00
db80dd4a1d
gnu: Add r-psych.
...
* gnu/packages/cran.scm (r-psych): New variable.
2018-03-08 23:31:56 +01:00
35b0c051c5
gnu: Add r-signal.
...
* gnu/packages/cran.scm (r-signal): New variable.
2018-03-08 23:31:55 +01:00
53cc59a1d8
gnu: r-ape: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-ape): Move from here...
* gnu/packages/cran.scm (r-ape): ...to here.
2018-03-08 23:31:55 +01:00
b7ce825c85
gnu: r-sfsmisc: Update to 1.1-2.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-2.
2018-03-08 23:31:55 +01:00
69c38faa91
gnu: r-nmf: Update to 0.21.0.
...
* gnu/packages/statistics.scm (r-nmf): Update to 0.21.0.
2018-03-08 23:31:55 +01:00
1b17fdbe41
gnu: r-openssl: Update to 1.0.1.
...
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.1.
2018-03-08 23:31:55 +01:00
bbf8540d43
gnu: python-sympy, python2-sympy: Only run core tests.
...
* gnu/packages/python.scm (python-sympy, python2-sympy)[arguments]: Move tests
after installation; run only core tests.
2018-03-08 23:14:10 +01:00
fee7f8a94e
gnu: nano: Update to 2.9.4.
...
* gnu/packages/nano.scm (nano): Update to 2.9.4.
2018-03-08 20:29:20 +02:00
84c195e505
gnu: r-dropbead: Update to 0-2.d746c6f.
...
* gnu/packages/bioinformatics.scm (r-dropbead): Update to 0-2.d746c6f.
2018-03-08 18:53:49 +01:00
7f2f834550
gnu: milkytracker: Actually link with the JACK library.
...
* gnu/packages/music.scm (milkytracker)[arguments]: Add appropriate configure
flag.
2018-03-08 10:09:29 -05:00
3e25d2b22e
gnu: python-msgpack-transitional: Use a distinct name.
...
* gnu/packages/python.scm (python-msgpack-transitional)[name]: New field.
2018-03-08 13:23:22 +01:00
875fe4b6b6
gnu: nghttp2: Use a fixed variant of tzdata for tests.
...
* gnu/packages/web.scm (nghttp2)[native-inputs]: Replace TZDATA with TZDATA-FOR-TESTS.
2018-03-08 13:23:22 +01:00
c32e3ddedd
services: agetty: Call default-serial-port only when starting.
...
* gnu/services/base.scm (agetty-shepherd-service): Call default-serial-port
only when starting.
2018-03-08 13:16:30 +01:00
770986d541
gnu: feh: Update to 2.25.1.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.25.1.
2018-03-08 12:25:05 +01:00
dffc5ab5e4
vm: Use 9p mount tags below 32 chars.
...
Fixes <https://bugs.gnu.org/30667 >.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.
* gnu/system/vm.scm (file-system->mount-tag): Use 'sha1' to compute the
tag.
2018-03-08 11:56:20 +01:00
3aab885144
gnu: guile: Add 2.2.2.
...
* gnu/packages/guile.scm (guile-2.2.2): New variable.
2018-03-08 11:56:20 +01:00
ca1499ce20
gnu: intelmetool, me-cleaner: Restrict to Intel platforms.
...
* gnu/packages/flashing-tools.scm (intelmetool)[supported-systems]: New
field.
(me-cleaner)[supported-systems]: New field.
2018-03-08 11:56:20 +01:00
338e2852b5
gnu: python-ddt: Update to 1.1.2.
...
* gnu/packages/python.scm (python-ddt): Update to 1.1.2.
2018-03-08 09:07:30 +01:00
ef20a6f0b4
gnu: python-ddt: Mark up description.
...
* gnu/packages/python.scm (python-ddt)[description]: Use @dfn.
2018-03-08 09:07:30 +01:00
3d63422c92
gnu: yapet: Update to 1.1.
...
* gnu/packages/password-utils.scm (yapet): Update to 1.1.
2018-03-08 09:07:29 +01:00
f95e9a6bca
gnu: keepassxc: Update to 2.3.1.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.1.
2018-03-08 09:07:29 +01:00
6e076b3d50
gnu: slurm: Update to 17.11.3.
...
* gnu/packages/parallel.scm (slurm): Update to 17.11.3.
2018-03-08 09:07:28 +01:00
254a88199f
gnu: global: Replace GLOBAL with GNU GLOBAL in description.
...
* gnu/packages/code.scm (global)[description]: Replace GLOBAL with GNU GLOBAL.
2018-03-08 09:01:12 +01:00
a89bf3318f
gnu: vulkan-icd-loader: Update to 1.1.70.0.
...
* gnu/packages/vulkan.scm (vulkan-icd-loader): Update to 1.1.70.0.
2018-03-08 08:53:19 +01:00
e2d0cf033e
gnu: sunxi-tools: Add cross-libc's "static" output.
...
* gnu/packages/admin.scm (sunxi-tools)[native-inputs]: Add cross-libc's
"static" output.
2018-03-08 01:41:22 +01:00
e7988175d9
gnu: sunxi-tools: Improve build error reporting.
...
* gnu/packages/admin.scm (sunxi-tools)[arguments]<#:phases>[set-environment-up]:
Improve build error reporting.
2018-03-08 01:41:20 +01:00
f43857d65d
gnu: emacs-slack: Update to 0-3.9272460.
...
* gnu/packages/emacs.scm (emacs-slack): Update to 0-3.9272460.
2018-03-08 01:24:02 +01:00
0bdd5b8ab7
gnu: Add pigx-rnaseq.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable.
2018-03-07 23:25:36 +01:00
e2cafc2449
gnu: Add r-algdesign.
...
* gnu/packages/cran.scm (r-algdesign): New variable.
2018-03-07 22:43:38 +01:00
f64fea1d2c
gnu: Add r-radiant-data.
...
* gnu/packages/cran.scm (r-radiant-data): New variable.
2018-03-07 22:18:38 +01:00
5d9b82acfc
gnu: Add r-shinyace.
...
* gnu/packages/cran.scm (r-shinyace): New variable.
2018-03-07 22:18:38 +01:00
a00968b7a8
gnu: Add r-import.
...
* gnu/packages/cran.scm (r-import): New variable.
2018-03-07 22:18:38 +01:00
b2dc4cb41c
gnu: Add r-cgdsr.
...
* gnu/packages/cran.scm (r-cgdsr): New variable.
2018-03-07 22:18:38 +01:00
12ff7f3fc7
gnu: glibc: Add a comment in the patch.
...
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: Add a comment.
2018-03-07 21:39:32 +01:00
036ed3a830
gnu: glibc-2.26-patch: Remove unneeded 'replacement' field.
...
* gnu/packages/base.scm (glibc-2.26-patched): Remove unneeded
'replacement' field.
2018-03-07 21:39:32 +01:00
7c788ed227
gnu: commencement: 'glibc-final' inherits the replacement of 'glibc'.
...
That was the intent of commit b672a81607https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00435.html >.
* gnu/packages/commencement.scm (glibc-final): Use 'package/inherit' so
that we inherit the 'replacement' of GLIBC.
2018-03-07 21:39:32 +01:00
0fccb24765
gnu: commencement: 'glibc-final' now inherits from 'glibc'.
...
* gnu/packages/commencement.scm (glibc-final): Inherit from GLIBC
instead of GLIBC-FINAL-WITH-BOOTSTRAP-BASH.
[propagated-inputs]: New fields.
2018-03-07 21:39:32 +01:00
021caafa2c
gnu: Add r-heatmaply.
...
* gnu/packages/cran.scm (r-heatmaply): New variable.
2018-03-07 18:12:42 +01:00
f35843674e
gnu: znc: Update to 1.6.6.
...
* gnu/packages/messaging.scm (znc): Update to 1.6.6.
2018-03-07 15:37:14 +01:00
7f1773eaee
gnu: Use HTTPS for zlib.net home pages.
...
* gnu/packages/compression.scm (zlib, pigz)[home-page]: Use HTTPS.
2018-03-07 15:37:14 +01:00
9dae73c31c
gnu: pigz: Update to 2.4.
...
* gnu/packages/compression.scm (pigz): Update to 2.4.
2018-03-07 15:37:13 +01:00
6c4da3b76a
gnu: meson: Mark up description.
...
* gnu/packages/build-tools.scm (meson)[description]: Use @dfn.
2018-03-07 15:37:13 +01:00
b8b34be61c
gnu: links, lynx, qutebrowser: Update phase style.
...
* gnu/packages/web-browsers.scm (links, lynx, qutebrowser)[arguments]:
Substitute INVOKE for SYSTEM and end phases with #t.
2018-03-07 15:37:13 +01:00
b9499508b4
gnu: keyutils: Update to 1.5.10.
...
* gnu/packages/crypto.scm (keyutils): Update to 1.5.10.
2018-03-07 15:37:13 +01:00
925102bb98
gnu: cppcheck: Update to 1.82.
...
* gnu/packages/check.scm (cppcheck): Update to 1.82.
2018-03-07 15:37:13 +01:00
d4f5e68e55
gnu: cmdtest: Update to 0.32.
...
* gnu/packages/check.scm (cmdtest): Update to 0.32.
2018-03-07 15:37:12 +01:00
45298300e4
gnu: pam-krb5: Mark up description.
...
* gnu/packages/admin.scm (pam-krb5)[description]: Use @code.
2018-03-07 15:37:12 +01:00
0e6c242bb7
gnu: pam-krb5: Update to 4.8.
...
* gnu/packages/admin.scm (pam-krb5): Update to 4.8.
2018-03-07 15:37:12 +01:00
c3d828855a
gnu: mg: Use HTTPS home page.
...
* gnu/packages/text-editors.scm (mg)[home-page]: Use HTTPS.
2018-03-07 15:37:11 +01:00
b11481a542
gnu: mg: Update to 20171014.
...
* gnu/packages/text-editors.scm (mg): Update to 20171014.
2018-03-07 15:37:11 +01:00
7649e4269e
gnu: c-reduce: Use HTTPS home page.
...
* gnu/packages/debug.scm (c-reduce)[home-page]: Use HTTPS.
2018-03-07 15:37:11 +01:00
2b30af9541
gnu: c-reduce: Update to 2.6.0.
...
* gnu/packages/debug.scm (c-reduce): Update to 2.6.0.
2018-03-07 15:37:11 +01:00
30e43e816b
gnu: python2-gobject@2: Update to 2.28.7
...
* gnu/packages/glib.scm (python2-gobject-2): Update to 2.28.7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-07 14:57:10 +01:00
eaa8292e41
gnu: Add python-pycurl.
...
* gnu/packages/python-web.scm (python-pycurl, python2-pycurl): New
variables.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-03-07 14:57:10 +01:00
9dda6dadf1
gnu: xdriinfo: Update to 1.0.6.
...
* gnu/packages/xorg.scm (xdriinfo): Update to 1.0.6.
2018-03-07 14:53:25 +01:00
b5ebc1bf8c
gnu: twm: Update to 1.0.10.
...
* gnu/packages/xorg.scm (twm): Update to 1.0.10.
[source]: Use bzip-compressed tarball.
2018-03-07 14:53:25 +01:00
5668a365d6
gnu: mkfontscale: Update to 1.1.3.
...
* gnu/packages/xorg.scm (mkfontscale): Update to 1.1.3.
2018-03-07 14:53:24 +01:00
0cf985d615
gnu: imagemagick: Update to 6.9.9-37.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-37.
2018-03-07 14:53:24 +01:00
e07a44891c
gnu: Add gtksourceviewmm.
...
* gnu/packages/gtk.scm (gtksourceviewmm): New public variable.
2018-03-07 14:53:24 +01:00
8e933cb36a
gnu: Use HTTPS on gtkmm.org home pages.
...
* gnu/packages/gtk.scm (atkmm, gtkmm)[home-page]: Use HTTPS.
* gnu/packages/gnome.scm (libgnomecanvasmm)[home-page]: Likewise.
* gnu/packages/glib.scm (glibmm)[home-page]: Likewise.
2018-03-07 14:53:24 +01:00
6a49ae7864
gnu: gtkmm: Use the for-test xorg variant for tests.
...
* gnu/packages/gtk.scm (gtkmm)[native-inputs]: Replace XORG-SERVER with
XORG-SERVER-1.19.3.
[arguments]: Add #:disallowed-references.
2018-03-07 14:53:24 +01:00
29c7b4d638
gnu: gtkmm: Update to 3.22.2.
...
* gnu/packages/gtk.scm (gtkmm): Update to 3.22.2.
[arguments]: Set #:configure-flags.
2018-03-07 14:53:24 +01:00
7700c6ca20
gnu: glibmm: Update to 2.54.1.
...
* gnu/packages/glib.scm (glibmm): Update to 2.54.1.
[arguments]: Add #:configure-flags.
2018-03-07 14:53:23 +01:00
06c15ee585
gnu: Add r-colorout.
...
* gnu/packages/statistics.scm (r-colorout): New public variable.
2018-03-07 16:38:26 +03:00
63d9900296
gnu: youtube-viewer: Add '$out/lib/perl5/site_perl/' to search path.
...
Fixes <https://bugs.gnu.org/30671 >.
Reported by Ricardo Wurmus <rekado@elephly.net>.
* gnu/packages/video.scm (youtube-viewer)[arguments]: In 'wrap-program'
phase, add '$out/lib/perl5/site_perl/' to search path.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-07 11:22:42 +01:00
270750d440
gnu: Add IBM Plex font.
...
* gnu/packages/fonts.scm (font-ibm-plex): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-03-07 11:22:42 +01:00
abfbdafd0e
linux-initrd: Add a hint for the missing module error.
...
* gnu/system/linux-initrd.scm (check-device-initrd-modules): Add a
'&fix-hint'.
2018-03-07 11:22:42 +01:00
ca23693d28
linux-initrd: Factorize 'check-device-initrd-modules'.
...
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Move to...
* gnu/system/linux-initrd.scm (check-device-initrd-modules): ... here.
New procedure.
* po/guix/POTFILES.in: Add it.
* guix/scripts/system.scm (check-initrd-modules)[check-device]: Remove.
Use 'check-device-initrd-modules' instead.
2018-03-07 11:22:42 +01:00
6c4458172d
services: file-systems: Include 'user-file-systems' service.
...
Previously the KNOWN-FS value used in 'essential-services' would be
incomplete: it would lack all the file systems provided by services that
extend 'file-system-service-type' (/sys/fs/cgroup,
/proc/sys/fs/binfmt_misc, etc.) Consequently, upon shutdown,
'user-processes' would unmount these file systems before their
corresponding service had been stopped; when their corresponding (e.g.,
'file-system-/proc/sys/fs/binfmt_misc') was stopped, its 'umount' call
would fail.
This was harmless in practice, but this patch makes sure things work as
intended and file systems are unmounted in the right order.
* gnu/services/base.scm (file-system-shepherd-services): Instantiate
'user-file-systems' Shepherd service from here.
(user-unmount-service-type, user-unmount-service): Remove.
* gnu/system.scm (essential-services): Remove call to 'user-unmount-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust comment.
2018-03-07 11:22:42 +01:00
366ddc1ac5
services: dicod: Depend on 'user-processes'.
...
* gnu/services/dict.scm (dicod-shepherd-service): Add 'requirement'.
2018-03-07 11:22:41 +01:00
2468ca0488
gnu: thefuck: Update to 3.25.
...
* gnu/packages/admin.scm (thefuck): Update to 3.25
[inputs]: Add python-pyte.
[native-inputs]: Remove python-setuptools.
* gnu/packages/patches/thefuck-test-environ.patch: Adjust to latest source.
2018-03-06 23:33:57 -06:00
f70666c9ce
gnu: Add maven-resolver-connector-basic.
...
* gnu/packages/maven.scm (maven-resolver-connector-basic): New variable.
2018-03-06 23:06:19 +01:00
bca6cf54f4
gnu: Add maven-resolver-util.
...
gnu/packages/maven.scm (maven-resolver-util): New variable.
2018-03-06 23:06:15 +01:00
360537838e
gnu: Add maven-resolver-test-util.
...
* gnu/packages/maven.scm (maven-resolver-test-util): New variable.
2018-03-06 23:06:12 +01:00
d85cb53924
gnu: Add maven-resolver-spi.
...
* gnu/packages/maven.scm (maven-resolver-spi): New variable.
2018-03-06 23:05:51 +01:00
41125eaff8
gnu: Add maven-resolver-api.
...
* gnu/packages/maven.scm: New file.
(maven-resolver-api): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-06 23:05:34 +01:00
8a325748fb
gnu: isc-dhcp: Update to 4.3.6-P1 [fixes CVE-2018-{5732,5733}].
...
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
2018-03-06 13:34:20 -05:00
3b5262865c
gnu: syncthing: Update to 0.14.45.
...
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.45.
[inputs]: Remove go-github-com-xtaci-kcp-go,
go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add
go-github-com-pkg-errors.
2018-03-06 13:24:20 -05:00
01794ffce0
gnu: Remove go-github-com-templexxx-xor.
...
* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
2018-03-06 13:24:20 -05:00
6482d30472
gnu: Remove go-github-com-templexxx-cpufeat.
...
* gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove
variable.
2018-03-06 13:24:20 -05:00
7d02ae4b85
gnu: Remove go-github-com-tjfoc-gmsm-sm4.
...
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
2018-03-06 13:24:19 -05:00
7915ef0bff
gnu: Remove go-github-com-klauspost-reedsolomon.
...
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove
variable.
2018-03-06 13:24:19 -05:00
abb8973544
gnu: Remove go-github-com-klauspost-cpuid.
...
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
2018-03-06 13:24:19 -05:00
eaca421063
gnu: Remove go-github-com-ccding-go-stun.
...
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
2018-03-06 13:24:19 -05:00
bb0a84f89d
gnu: Remove go-github-com-xtaci-kcp-go.
...
* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
2018-03-06 13:24:19 -05:00
78f19a4754
gnu: Remove go-github-com-xtaci-smux.
...
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
2018-03-06 13:24:15 -05:00
77412c45b1
gnu: re2: Update to 2018-03-01.
...
* gnu/packages/regex.scm (re2): Update to 2018-03-01.
2018-03-06 18:23:42 +01:00
37204750b1
gnu: feh: Update to 2.25.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.25.
2018-03-06 18:22:26 +01:00
6836c228ae
gnu: iceauth: Update to 1.0.8.
...
* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
2018-03-06 18:16:51 +01:00
6f1f8d1312
gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537].
...
See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/ > for
more information about the vulnerabilities.
* gnu/packages/django.scm (python-django): Update to 1.11.11.
2018-03-06 17:38:12 +01:00
c072cf57b9
gnu: samtools: Update to 1.7.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
2018-03-06 16:03:04 +01:00
727d847980
gnu: htslib: Update to 1.7.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
2018-03-06 16:03:04 +01:00
e325c89076
gnu: r-rhdf5: Make build reproducible.
...
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
2018-03-06 16:03:04 +01:00
fe58ab013b
gnu: r-lambda-r: Run unit tests.
...
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
2018-03-06 16:03:04 +01:00
08ddb98aef
gnu: r-gtools: Make output deterministic.
...
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
2018-03-06 16:03:04 +01:00
5ad13e6cdf
gnu: emacs-transmission: Update to 0.12.1.
...
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
2018-03-06 12:09:02 +03:00
69611d3eac
gnu: haskell-mode: Fix find emacs-stream elisp directory.
...
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
2018-03-06 10:34:59 +03:00
cee03b267c
gnu: ovmf: Fix build and add FIXME.
...
* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME
about failing script.
2018-03-06 08:27:07 +01:00
0f2778029a
gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version.
...
* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>:
Modify fix-version to use the distibution version of java-aqute-bndlib.
2018-03-05 20:42:48 +01:00
c8213ffc52
gnu: perl-email-address: Update to 1.909.
...
* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
2018-03-05 17:32:11 +01:00
1c3de94cff
gnu: perl-sub-quote: Update to 2.005000.
...
* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
2018-03-05 17:32:11 +01:00
503a00597b
gnu: perl-xml-compile-cache: Update to 1.06.
...
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
2018-03-05 17:32:11 +01:00
b5de208e84
gnu: perl-xml-rss: Update to 1.60.
...
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
2018-03-05 17:32:11 +01:00
437e5fae13
gnu: editres: Update to 1.0.7.
...
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
2018-03-05 17:32:10 +01:00
cc7a4bbd27
gnu: tocc, libtocc: Use HTTPS home page.
...
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
2018-03-05 17:32:10 +01:00
55b7cd10c2
gnu: perl-io-socket-ip: Update to 0.39.
...
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
2018-03-05 17:32:10 +01:00
530df311ac
gnu: perl-www-mechanize: Update to 1.87.
...
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
2018-03-05 17:32:09 +01:00
9599339c59
gnu: openvpn: Mark up description.
...
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
2018-03-05 17:32:09 +01:00
0d34993a65
gnu: openvpn: Update to 2.4.5.
...
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
2018-03-05 17:32:09 +01:00
211748d475
gnu: papi: Use HTTPS home page.
...
* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
2018-03-05 17:32:08 +01:00
f7c870f78a
gnu: papi: Fix documentation location.
...
* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.
2018-03-05 17:32:08 +01:00
0ebc1b934d
gnu: xpra: Update to 2.2.5.
...
* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
2018-03-05 12:29:37 +01:00
6a4eaafee0
gnu: linux-libre@4.14: Update to 4.14.24.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24.
(%linux-libre-4.14-hash): Update hash.
2018-03-05 03:43:45 -05:00
ee483a5626
gnu: linux-libre@4.9: Update to 4.9.86.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
2018-03-05 03:43:02 -05:00
88b1a38e26
gnu: linux-libre@4.4: Update to 4.4.120.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
2018-03-05 03:42:07 -05:00
68d70f6ae3
gnu: Add emacs-terraform-mode.
...
* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
2018-03-05 07:48:49 +00:00
dc97f7e20e
gnu: Add emacs-hcl-mode.
...
* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
2018-03-05 07:48:48 +00:00
16718b6776
services: Add openntpd service.
...
* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to
set openntpd daemon's user and localstatedir. Add a custom phase to not
try to create said directory at install time.
* gnu/services/networking.scm (<openntpd-configuration>): New record type.
(openntpd-shepherd-service, openntpd-service-activation): New procedures.
(openntpd-service-type): New variable.
* doc/guix.texi (Networking Services): Add openntpd documentation.
2018-03-05 08:46:28 +02:00
ac1a9ce8b0
gnu: papi: Update phase style.
...
* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for
SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.
2018-03-04 18:03:46 +01:00
635dd0cc96
gnu: tomb: Update phase style.
...
* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:45 +01:00
9539016e3a
gnu: tomb: Use HTTPS home page.
...
* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS.
2018-03-04 18:03:45 +01:00
ed36949a9d
gnu: footswitch: Update to 0.1-2.deedd87.
...
* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87.
2018-03-04 18:03:45 +01:00
bd128d5e88
gnu: footswitch: Remove redundant MKDIR-P.
...
* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P
before INSTALL-FILE.
2018-03-04 18:03:45 +01:00
92793c7b02
gnu: gitolite: Update phase style.
...
* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:44 +01:00
7730b7179c
gnu: gitolite: Update to 3.6.7.
...
* gnu/packages/version-control.scm (gitolite): Update to 3.6.7.
2018-03-04 18:03:44 +01:00
d035eaa304
gnu: ii, sic: Use HTTPS home pages.
...
* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS.
2018-03-04 18:03:44 +01:00
e0dbead5a7
gnu: ii: Update to 1.8.
...
* gnu/packages/irc.scm (ii): Update to 1.8.
2018-03-04 18:03:44 +01:00
53244d1ffa
gnu: cloc: Update phase style.
...
* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM*
and end phases with #t.
2018-03-04 18:03:44 +01:00
95943ed7dc
gnu: cloc: Update to 1.76.
...
* gnu/packages/code.scm (cloc): Update to 1.76.
[source]: Update origin URI scheme.
[inputs]: Add perl-parallel-forkmanager.
2018-03-04 18:03:43 +01:00
03b7195794
gnu: liblo: Mark up description.
...
* gnu/packages/audio.scm (liblo)[description]: Use @dfn.
2018-03-04 18:03:43 +01:00
3e57b7d99b
gnu: multipath-tools: Update to 0.7.4.
...
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4.
[source]: Download using HTTPS.
2018-03-04 17:54:40 +01:00
5275f69e6e
gnu: freexl: Update to 1.0.5 [security fixes].
...
Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and
CVE-2018-7439.
* gnu/packages/xml.scm (freexl): Update to 1.0.5.
2018-03-04 17:54:40 +01:00
5b0b520e22
gnu: ceph: Update to 12.2.4.
...
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags. Build with
CMAKE-3.11. Adjust file substitutions. Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66. Add PYTHON2-PRETTYTABLE.
2018-03-04 17:54:40 +01:00
1568cc14fa
gnu: Add cmake@3.11.
...
* gnu/packages/cmake.scm (cmake-3.11): New public variable.
2018-03-04 17:54:40 +01:00
bbce53c4b3
gnu: Add boost@1.66.0.
...
* gnu/packages/boost.scm (boost-1.66): New public variable.
2018-03-04 17:54:40 +01:00
8293d21c66
gnu: java-snappy: Update to 1.1.7.
...
* gnu/packages/compression.scm (java-snappy): Update to 1.1.7.
[arguments]: Use INVOKE instead of SYSTEM*. Avoid CMAKE dependency. Delete
Hadoop test. Enable fixed test.
[native-inputs]: Add JAVA-COMMONS-LANG and JAVA-COMMONS-IO.
2018-03-04 17:54:40 +01:00
5a43735722
gnu: snappy: Update to 1.1.7.
...
* gnu/packages/compression.scm (snappy): Update to 1.1.7.
[source]: Change to git archive. Set file-name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.
[description]: Fix infractions.
2018-03-04 17:54:39 +01:00
7fa9cca84a
gnu: rocksdb: Update to 5.10.4.
...
* gnu/packages/databases.scm (rocksdb): Update to 5.10.4.
[source]: Substitute the unbundled copy of GNU Parallel.
[arguments]: Add "V=1" "USE_RTTI=1" and
"ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags. Set #:test-target to
"check_some". Respect parallel jobs in 'build-release-libraries' phase and
rename to 'build'.
[license]: Update for changes in 5.5.4.
2018-03-04 17:54:39 +01:00
81ed306dee
gnu: inkscape: Disable duplicate icon cache generation.
...
* gnu/packages/inkscape.scm (inkscape): Disable duplicate icon cache
generation.
2018-03-04 15:44:34 +01:00
692f6e457e
gnu: abiword: Disable duplicate icon cache generation.
...
* gnu/packages/abiword.scm (abiword): Disable duplicate icon cache generation.
2018-03-04 15:43:46 +01:00
64cdd73c22
gnu: python-funcy: Fix tests.
...
* gnu/packages/python.scm (python-funcy)[native-inputs]: Delete python-pytest-warnings.
2018-03-04 15:42:41 +01:00
48c8622010
gnu: antlr3-3.3: Fix java8 issue.
...
* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch.
* gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:16:37 +01:00
4c763b4d67
gnu: antlr3-3.1: Fix java8 issue.
...
* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch.
* gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:13:47 +01:00
82f09c0e8e
gnu: go-github-com-aki237-nscjar: Declare a source file-name.
...
* gnu/packages/golang.scm (go-github-com-aki237-nscjar)[source]: Declare
a source file-name.
2018-03-04 12:38:51 +02:00
6de107b0c9
gnu: go-github-com-davidjpeacock-cli: Declare a source file-name.
...
* gnu/packages/golang.scm (go-github-com-davidjpeacock-cli)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
fdbece74aa
gnu: go-github-com-alsm-ioprogress: Declare a source file-name.
...
* gnu/packages/golang.scm (go-github-com-alsm-ioprogress)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
661ad6f0c2
gnu: freegish: Declare a source file-name.
...
* gnu/packages/games.scm (freegish)[source]: Declare a source file-name.
2018-03-04 12:38:50 +02:00
a1dc853ef4
gnu: disorderfs: Declare a source file-name.
...
* gnu/packages/file-systems.scm (disorderfs)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
aeb95f1f97
gnu: emacs-sly: Declare a source file-name.
...
* gnu/packages/emacs.scm (emacs-sly)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
5a6f7a6805
gnu: emacs-epl: Declare a source file-name.
...
* gnu/packages/emacs.scm (emacs-epl)[source]: Declare a source
file-name.
2018-03-04 12:38:47 +02:00
c553b08b49
gnu: python-apsw: Use invoke.
...
* gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.
2018-03-04 12:05:14 +02:00
f5c847ebd0
gnu: python-apsw: Declare a source file-name.
...
* gnu/packages/databases.scm (python-apsw)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
c2c04cde9b
gnu: kurly: Declare a source file-name.
...
* gnu/packages/curl.scm (kurly)[source]: Declare a source file-name.
2018-03-04 12:05:14 +02:00
277be74fa7
gnu: unshield: Declare a source file-name.
...
* gnu/packages/compression.scm (unshield)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
eafe96ea9e
gnu: sfarkxtc: Declare a source file-name.
...
* gnu/packages/compression.scm (sfarkxtc)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
da49d13710
gnu: piranha: Declare a source file-name.
...
* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
d9a069c2d9
gnu: libdivsufsort: Declare a source file-name.
...
* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
2018-03-04 12:05:13 +02:00
5110672474
gnu: seek: Declare a source file-name.
...
* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
b1d4026dfb
gnu: r-dropbead: Declare a source file-name.
...
* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
2018-03-04 12:05:10 +02:00
a1eb506cf3
gnu: faust@2: Declare a source file-name.
...
* gnu/packages/audio.scm (faust@2)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
fdf359f82b
gnu: rubberband: Declare a source file-name.
...
* gnu/packages/audio.scm (rubberband)[source]: Declare a source
file-name.
2018-03-04 11:01:40 +02:00
70aa07d296
gnu: qjackrcd: Declare a source file-name.
...
* gnu/packages/audio.scm (qjackrcd)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
6677c99a8b
gnu: lv2-devel: Declare a source file-name.
...
* gnu/packages/audio.scm (lv2-devel)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
35a01e67c8
gnu: lv2-mda-piano: Declare a source file-name.
...
* gnu/packages/audio.scm (lv2-mda-piano)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
a18ee793d7
gnu: papagayo: Declare a source file-name.
...
* gnu/packages/animation.scm (papagayo)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
7fc944273d
gnu: masscan: Declare a source file-name.
...
* gnu/packages/admin.scm (masscan)[source]: Declare a source file-name.
2018-03-04 11:01:36 +02:00
bc037c1bd1
services: redis: Add a default-value to the redis-service-type.
...
* gnu/packages/databases.scm (redis-service-type)[default-value]: Set
to (redis-configuration).
2018-03-03 23:52:26 +00:00
e903738f86
services: mysql: Add a default-value to the mysql-service-type.
...
* gnu/services/databases.scm (mysql-service-type)[default-value]: Set
to (mysql-configuration).
2018-03-03 23:52:25 +00:00
1e6b9c6e16
services: postgresql: Add a default-value to the postgresql-service-type.
...
* gnu/packages/databases.scm (<postgresql-configuration>)
[config-file,data-directory]: Add default.
(postgresql-service-type)[default-value]:
Set to (postgresql-configuration).
2018-03-03 23:52:23 +00:00
8b2219d847
linux-modules: Add module-aliases.
...
* gnu/build/linux-modules.scm (module-aliases): New variable.
2018-03-03 23:40:02 +01:00
c94752ad22
gnu: tor: Update to 0.3.2.10 [security fixes].
...
This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490),
TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well.
* gnu/packages/tor.scm (tor): Update to 0.3.2.10.
2018-03-03 21:31:08 +01:00
1adeef3194
gnu: Add dropseq-tools.
...
* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
2018-03-03 21:28:05 +01:00
72299db9fe
gnu: Add java-picard-2.10.3.
...
* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
2018-03-03 21:28:02 +01:00
719fa958f3
gnu: Add java-htsjdk-2.10.1.
...
* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
2018-03-03 21:27:59 +01:00
9a599c17b7
gnu: Add java-htsjdk-latest.
...
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
2018-03-03 21:27:57 +01:00
9ac7db1830
gnu: Add java-biojava-alignment-4.0.
...
* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
2018-03-03 21:27:56 +01:00
5528f9e8f0
gnu: Add java-biojava-phylo-4.0.
...
* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
2018-03-03 21:27:53 +01:00
e44da58c16
gnu: Add java-biojava-core-4.0.
...
* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
2018-03-03 21:27:51 +01:00
22c09c335b
gnu: Add java-biojava-alignment.
...
* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
2018-03-03 21:27:48 +01:00
b28c803708
gnu: Add java-biojava-phylo.
...
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
2018-03-03 21:27:46 +01:00
10645b9212
gnu: Add java-forester-1.005.
...
* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
2018-03-03 21:27:44 +01:00
f09d16e594
gnu: Add java-forester.
...
* gnu/packages/bioinformatics.scm (java-forester): New variable.
2018-03-03 21:27:41 +01:00
93abc975fe
gnu: Add java-openchart2.
...
* gnu/packages/java.scm (java-openchart2): New variable.
2018-03-03 21:27:39 +01:00
5fef15e506
gnu: Add java-biojava-core.
...
* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
2018-03-03 21:27:36 +01:00
dbb3581383
gnu: Add java-jdistlib.
...
* gnu/packages/statistics.scm (java-jdistlib): New variable.
2018-03-03 21:27:33 +01:00
4e92911c82
gnu: Add java-jtransforms.
...
* gnu/packages/algebra.scm (java-jtransforms): New variable.
2018-03-03 21:27:30 +01:00
24074b0bdd
gnu: Add java-jlargearrays.
...
* gnu/packages/algebra.scm (java-jlargearrays): New variable.
2018-03-03 21:27:27 +01:00
c8d996080e
gnu: Add java-la4j.
...
* gnu/packages/algebra.scm (java-la4j): New variable.
2018-03-03 21:27:21 +01:00
bd975831c6
gnu: Add fastqc.
...
* gnu/packages/bioinformatics.scm (fastqc): New variable.
2018-03-03 21:21:48 +01:00
2f0d041816
gnu: Add java-cisd-jhdf5.
...
* gnu/packages/java.scm (java-cisd-jhdf5): New variable.
2018-03-03 21:21:48 +01:00
04ddca26e6
gnu: Add java-cisd-args4j.
...
* gnu/packages/java.scm (java-cisd-args4j): New variable.
2018-03-03 21:21:47 +01:00
30d554732a
gnu: Add java-cisd-base.
...
* gnu/packages/java.scm (java-cisd-base): New variable.
2018-03-03 21:21:47 +01:00
f9e0fcb28f
gnu: Add texlive-fonts-iwona.
...
* gnu/packages/tex.scm (texlive-fonts-iwona): New variable.
2018-03-03 21:21:47 +01:00
bdcf0e6fd4
services: messaging: Prosody config supports file-like objects.
...
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/configuration.scm (serialize-configuration,
serialize-maybe-stem, serialize-package): Return strings or string-valued
gexps (these procedures were only used for their side-effects).
* gnu/services/messaging.scm (serialize-field, serialize-field-list,
enclose-quotes, serialize-raw-content, serialize-ssl-configuration,
serialize-virtualhost-configuration-list,
serialize-int-component-configuration-list,
serialize-ext-component-configuration-list,
serialize-virtualhost-configuration, serialize-int-component-configuration,
serialize-ext-component-configuration, serialize-prosody-configuration):
Return strings or string-valued gexps and stop printing.
(prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with
MIXED-TEXT-FILE instead of using its output with PLAIN-FILE.
(serialize-non-negative-integer, serialize-non-negative-integer-list): Convert
numbers to strings.
(file-object?, serialize-file-object, file-object-list?,
serialize-file-object-list): New procedures.
(ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths,
groups-file]: Replace FILE-NAME with FILE-OBJECT.
* guix/gexp.scm (file-like?): New exported procedure.
2018-03-03 18:21:52 +01:00
fb547c3429
gnu: dictionaries: Add copyright line.
...
* gnu/packages/dictionaries.scm: Add copyright line.
2018-03-03 14:23:17 +01:00
5e332c57d1
gnu: wireshark: Update to 2.4.5.
...
* gnu/packages/networking.scm (wireshark): Update to 2.4.5.
2018-03-03 14:21:20 +01:00
0645da3fe3
gnu: grammalecte: Update to 0.6.2.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2.
[arguments]: Remove.
2018-03-03 14:06:43 +01:00
62b138caf5
gnu: Add ruby-iruby.
...
* gnu/packages/ruby.scm (ruby-iruby): New variable.
2018-03-03 12:51:27 +00:00
8279b1d3b1
gnu: Add ruby-mimemagic.
...
* gnu/packages/ruby.scm (ruby-mimemagic): New variable.
2018-03-03 12:51:26 +00:00
b03eb6acb4
gnu: Add ruby-data_uri.
...
* gnu/packages/ruby.scm (ruby-data_uri): New variable.
2018-03-03 12:51:26 +00:00
d0afff263c
gnu: Add ruby-cztop.
...
* gnu/packages/ruby.scm (ruby-cztop): New variable.
2018-03-03 12:51:26 +00:00
fe5dd5f446
gnu: Add ruby-czmq-ffi-gen.
...
* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable.
2018-03-03 12:51:26 +00:00
afdb437c82
gnu: Add ruby-bond.
...
* gnu/packages/ruby.scm (ruby-bond): New variable.
2018-03-03 12:51:26 +00:00
a8d2bf3cab
gnu: Add ruby-bacon-bits.
...
* gnu/packages/ruby.scm (ruby-bacon-bits): New variable.
2018-03-03 12:51:26 +00:00
cf646acf96
gnu: Add ruby-mocha-on-bacon.
...
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
2018-03-03 12:51:25 +00:00
433dc74611
gnu: networking: Add czmq.
...
* gnu/packages/networking.scm (czmq): New variable.
2018-03-03 12:51:23 +00:00
add928d35f
gnu: ghc-refact: Fix typo in description.
...
* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo.
2018-03-03 13:28:22 +01:00
75377c6c48
gnu: quagga: Update to 1.2.4.
...
* gnu/packages/networking.scm (quagga): Update to 1.2.4.
2018-03-03 13:28:22 +01:00
e6d30cf755
gnu: conky: Remove redundant MKDIR-P.
...
* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P.
2018-03-03 13:27:17 +01:00
9d13f82da8
gnu: sslh: Update to 1.19c.
...
* gnu/packages/networking.scm (sslh): Update to 1.19c.
2018-03-03 13:27:16 +01:00
dbefd3ff72
gnu: wv: Edit description.
...
Wv is still unmaintained – this just makes it more obvious.
* gnu/packages/wv.scm (wv)[description]: Mention the product versions in
addition to internal file format ones. Align more closely with the
upstream description.
2018-03-03 13:27:16 +01:00
83a9003c5d
gnu: libseccomp: Update to 2.3.3.
...
* gnu/packages/linux.scm (libseccomp): Update to 2.3.3.
2018-03-03 13:27:16 +01:00
74a2f8ff1f
gnu: hdparm: Update to 9.54.
...
* gnu/packages/linux.scm (hdparm): Update to 9.54.
2018-03-03 13:27:16 +01:00
f4009ade25
gnu: sdl2: Update to 2.0.8.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
2018-03-03 13:27:15 +01:00
ec8b3d48ff
gnu: r-httpuv: Update to 1.3.6.2.
...
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
2018-03-03 10:46:35 +01:00
fac40f38fe
gnu: r-dbi: Update to 0.8.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
2018-03-03 10:46:35 +01:00
081d143d3b
gnu: r-performanceanalytics: Update to 1.5.2.
...
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2.
[propagated-inputs]: Add r-quadprog.
[native-inputs]: Remove gfortran.
2018-03-03 10:46:35 +01:00
eac026e5c8
linux-initrd: Add virtio modules to '%base-initrd-modules'.
...
Fixes a regression in installation tests, whereby 'guix system init'
would report that virtio modules are missing for the target devices.
In practice virtio modules were always available since 'base-initrd' was
always called with #:virtio? #t. This commit simply moves them to
'%base-initrd-modules' so that 'guix system' knows they're available.
Reported by Danny Milosavljevic <dannym@scratchpost.org> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112 >.
* gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio
modules.
(base-initrd): Remove #:virtio? and 'virtio-modules'.
* gnu/system/vm.scm (expression->derivation-in-linux-vm)
(system-qemu-image, virtualized-operating-system): Remove uses of
#:virtio?.
* doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc.
2018-03-03 09:41:21 +01:00
f850e0da8e
system: beaglebone-black: Use 'initrd-modules'.
...
* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules'
instead of 'initrd'.
2018-03-03 09:41:21 +01:00
5a3716aebf
vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd.
...
Fixes a regression introduced in
bc499b113a
2018-03-03 09:41:21 +01:00
3cb3a4e6e5
linux-initrd: 'file-system-modules' returns the right module list.
...
Fixes a bug whereby, for an "iso9660" file system, it would return
'("iso9660" "isofs"), i.e., both the key and the value.
Reported by Danny Milosavljevic <dannym@scratchpost.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115 >.
* gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns
a key/value pair; match it.
2018-03-03 09:41:21 +01:00
3ede1550e8
gnu: cutadapt: Update to 1.16.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
2018-03-02 23:44:16 +01:00
62a4b952c0
gnu: python-xopen: Update to 0.3.2.
...
* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
2018-03-02 23:43:55 +01:00
fa5965990d
gnu: Add r-hpar.
...
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-02 23:24:57 +01:00
2a112be09a
gnu: Add r-powerplus.
...
* gnu/packages/cran.scm (r-powerplus): New variable.
2018-03-02 23:07:26 +01:00
d976454c6b
gnu: Add r-np.
...
* gnu/packages/cran.scm (r-np): New variable.
2018-03-02 23:07:20 +01:00
7b81a7eabf
gnu: Add r-phontools.
...
* gnu/packages/cran.scm (r-phontools): New variable.
2018-03-02 23:07:12 +01:00
68b6a67e94
gnu: Add r-complexplus.
...
* gnu/packages/cran.scm (r-complexplus): New variable.
2018-03-02 23:07:04 +01:00
f96eda90d5
gnu: Add r-expm.
...
* gnu/packages/cran.scm (r-expm): New variable.
2018-03-02 23:06:57 +01:00
7531ee842c
gnu: Add r-trend.
...
* gnu/packages/cran.scm (r-trend): New variable.
2018-03-02 23:06:50 +01:00
d32e572489
gnu: Add r-cubature.
...
* gnu/packages/cran.scm (r-cubature): New variable.
2018-03-02 23:06:41 +01:00
6615a36421
gnu: Add r-urca.
...
* gnu/packages/cran.scm (r-urca): New variable.
2018-03-02 23:06:33 +01:00
5b25bc55dc
gnu: Add r-fractal.
...
* gnu/packages/cran.scm (r-fractal): New variable.
2018-03-02 23:06:26 +01:00
19da7fe314
gnu: Add r-extradistr.
...
* gnu/packages/cran.scm (r-extradistr): New variable.
2018-03-02 23:06:17 +01:00
4993a02ad7
gnu: Add r-tsa.
...
* gnu/packages/cran.scm (r-tsa): New variable.
2018-03-02 23:06:10 +01:00
a2c079a780
gnu: Add r-wmtsa.
...
* gnu/packages/cran.scm (r-wmtsa): New variable.
2018-03-02 23:06:00 +01:00
b6dc325538
gnu: Add r-tseries.
...
* gnu/packages/cran.scm (r-tseries): New variable.
2018-03-02 23:05:52 +01:00
dceb159206
gnu: Add r-quantmod.
...
* gnu/packages/cran.scm (r-quantmod): New variable.
2018-03-02 23:05:43 +01:00
0be7effefa
gnu: Add r-sapa.
...
* gnu/packages/cran.scm (r-sapa): New variable.
2018-03-02 23:05:35 +01:00
034ac9d67a
gnu: Add r-ifultools.
...
* gnu/packages/cran.scm (r-ifultools): New variable.
2018-03-02 23:05:14 +01:00
d3cb62e58d
gnu: Add r-splus2r.
...
* gnu/packages/cran.scm (r-splus2r): New variable.
2018-03-02 23:05:02 +01:00
0b64332c74
gnu: Add r-leaps.
...
* gnu/packages/cran.scm (r-leaps): New variable.
2018-03-02 23:03:10 +01:00
93c21ddc86
gnu: Add r-ttr.
...
* gnu/packages/cran.scm (r-ttr): New variable.
2018-03-02 22:55:10 +01:00
4e35c4290e
gnu: Add r-rbiofabric.
...
* gnu/packages/graph.scm (r-rbiofabric): New variable.
2018-03-02 22:23:18 +01:00
1088744d87
gnu: Add r-sna.
...
* gnu/packages/cran.scm (r-sna): New variable.
2018-03-02 22:23:18 +01:00
07a2f34d5c
gnu: Add r-statnet-common.
...
* gnu/packages/cran.scm (r-statnet-common): New variable.
2018-03-02 22:23:18 +01:00
5f4565b18f
gnu: Add r-network.
...
* gnu/packages/cran.scm (r-network): New variable.
2018-03-02 22:23:18 +01:00
b01a1b34f2
gnu: nghttp2: Update to 1.31.0.
...
* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
2018-03-02 15:52:57 +01:00
6fda93e6c8
gnu: libpsl: Update to 0.20.1.
...
* gnu/packages/web.scm (libpsl): Update to 0.20.1.
2018-03-02 15:52:57 +01:00
5658b4ce69
gnu: zerofree: Update to 1.1.1.
...
* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
2018-03-02 15:52:57 +01:00
a40f732bb6
gnu: python-webencodings: Fix typo in description.
...
* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
2018-03-02 15:52:57 +01:00
139ecdee8e
gnu: delta: Remove redundant code.
...
* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P
calls.
2018-03-02 15:52:56 +01:00
defe0282c2
gnu: perl-mozilla-ca: Update to 20180117.
...
* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117.
2018-03-02 15:52:56 +01:00
dc8584d2b1
gnu: perl-test-harness: Update to 3.41.
...
* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41.
2018-03-02 15:52:56 +01:00
6e48fbb19a
gnu: highlight: Don't hard-code Lua version.
...
* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the
Lua prefix programatically instead of hard-coding it.
2018-03-02 15:52:56 +01:00
3a5c02777d
gnu: highlight: Update to 3.42.
...
* gnu/packages/pretty-print.scm (highlight): Update to 3.42.
2018-03-02 15:52:55 +01:00
467834d550
gnu: ghc-abstract-deque: Fix typos in description.
...
* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos.
2018-03-02 15:52:55 +01:00
d338321ddb
gnu: qscintilla: Use HTTPS home page.
...
* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS.
2018-03-02 15:52:55 +01:00
2c1cc27f8f
gnu: fortify-headers: Update to 0.9.
...
* gnu/packages/suckless.scm (fortify-headers): Update to 0.9.
2018-03-02 15:52:55 +01:00
5c0f68e844
gnu: fossil: Update phase style.
...
* gnu/packages/version-control.scm (fossil)[arguments]: Substitute
INVOKE for SYSTEM* and end phases with #t.
2018-03-02 15:52:54 +01:00
f136c8f23d
gnu: gnome-mpv: Update to 0.14.
...
* gnu/packages/video.scm (gnome-mpv): Update to 0.14.
2018-03-02 15:52:54 +01:00
65a3c342b0
gnu: ath9k-htc-firmware: Use INSTALL-FILE.
...
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute
INSTALL-FILE for COPY-FILE with MKDIR-P.
2018-03-02 15:52:54 +01:00
f563d19904
gnu: ovmf: Update phase style.
...
* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and
end phases with #t.
2018-03-02 15:52:54 +01:00
0dae492195
gnu: ovmf: Use HTTPS home page.
...
* gnu/packages/firmware.scm (ovmf)[home-page]: Use HTTPS.
2018-03-02 15:52:54 +01:00
3ebf12ea0e
gnu: b43-tools: Use HTTPS home page.
...
* gnu/packages/firmware.scm (b43-tools)[home-page]: Use HTTPS.
2018-03-02 15:52:53 +01:00
315c89f5ba
gnu: b43-tools: Update phase style.
...
* gnu/packages/firmware.scm (b43-tools)[arguments]: Substitute INVOKE
for SYSTEM* and FOR-EACH for EVERY, and end phases with #t.
2018-03-02 15:52:53 +01:00
bb5c358204
gnu: b43-tools: Update to 0.0.0-1.27892ef.
...
* gnu/packages/firmware.scm (b43-tools): Update to 0.0.0-1.27892ef.
[version]: Use our standard versioning scheme.
2018-03-02 15:52:53 +01:00
12adfdf0b6
gnu: Update (gnu packages python-web) phase styles.
...
* gnu/packages/python-web.scm (python-openid, python-terminado)
(python-geventhttpclient, python-cachecontrol, python-webencodings)
(python-s3transfer)[arguments]: Substitute INVOKE for SYSTEM* and end
phases with #t.
2018-03-02 15:52:53 +01:00
6a192184ec
gnu: python-flask-script: Update to 2.0.6.
...
* gnu/packages/python-web.scm (python-flask-script): Update to 2.0.6.
2018-03-02 15:52:52 +01:00
05075433a2
gnu: python-htmlmin: Update to 0.1.12.
...
* gnu/packages/python-web.scm (python-htmlmin): Update to 0.1.12.
2018-03-02 15:52:52 +01:00
bda82eff18
gnu: python-s3transfer: Update to 0.1.13.
...
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.1.13.
2018-03-02 15:52:52 +01:00
e46dd02d99
gnu: python-webtest: Update to 2.0.29.
...
* gnu/packages/python-web.scm (python-webtest): Update to 2.0.29.
2018-03-02 15:52:52 +01:00
6f21aca728
gnu: python-ndg-httpsclient: Update to 0.4.4.
...
* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.4.4.
2018-03-02 15:52:51 +01:00
3c5658c596
gnu: python-cssutils: Update to 1.0.2.
...
* gnu/packages/python-web.scm (python-cssutils): Update to 1.0.2.
2018-03-02 15:52:51 +01:00
1a6fb8dac1
gnu: python-flask-babel: Update to 0.11.2.
...
* gnu/packages/python-web.scm (python-flask-babel): Update to 0.11.2.
2018-03-02 15:52:51 +01:00
424cea8083
guix system: Check for the lack of modules in the initrd.
...
* guix/scripts/system.scm (check-mapped-devices): Take an OS instead of
a list of <mapped-device>. Pass #:needed-for-boot? and #:initrd-modules
to CHECK.
(check-initrd-modules): New procedure.
(perform-action): Move 'check-mapped-devices' call first. Add call to
'check-initrd-modules'.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): New
procedure.
(check-luks-device): Add #:initrd-modules and #:needed-for-boot?. Use
them to call 'check-device-initrd-modules'.
2018-03-02 13:53:15 +01:00
bc499b113a
system: Add 'initrd-modules' field.
...
* gnu/system.scm (<operating-system>)[initrd-modules]: New field.
(operating-system-initrd-file): Pass #:linux-modules to 'make-initrd'.
* gnu/system/linux-initrd.scm (default-initrd-modules): New procedure.
(%base-initrd-modules): New macro.
(base-initrd): Add #:linux-modules and honor it.
* gnu/system/install.scm (embedded-installation-os): Use
'initrd-modules' instead of 'initrd'.
* gnu/tests/install.scm (%raid-root-os): Likewise.
* doc/guix.texi (operating-system Reference): Add 'initrd-modules'.
(Initial RAM Disk): Document it. Adjust example to not use
#:extra-modules.
2018-03-02 13:53:10 +01:00
615a89e310
linux-initrd: Separate file system module logic.
...
* gnu/system/linux-initrd.scm (vhash, lookup-procedure): New macros.
(file-system-type-modules, file-system-modules): New procedures.
(base-initrd)[cifs-modules, virtio-9p-modules]: Remove.
[file-system-type-predicate]: Remove.
Use 'file-system-modules' instead of 'find' +
'file-system-type-predicate'.
2018-03-02 13:46:45 +01:00
8661ad2743
linux-modules: Add 'device-module-aliases' and related procedures.
...
* gnu/build/linux-modules.scm (readlink*, stat->device-major)
(stat->device-minor): New procedures.
(%not-slash): New variable.
(read-uevent, device-module-aliases, read-module-aliases)
(current-alias-file, known-module-aliases, matching-modules): New
procedures.
2018-03-02 13:46:33 +01:00
Mark H Weaver