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37850 Commits

Author SHA1 Message Date
Ricardo Wurmus 1269a926c0
gnu: r-yamss: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus 2a6d838337
gnu: r-ebimage: Update to 4.26.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus b68a9e80f4
gnu: r-aucell: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus 9da2021f49
gnu: r-allelicimbalance: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.22.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus ee1a45d719
gnu: r-annotationtools: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.58.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus 69a2ec5447
gnu: r-annotationfuncs: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.34.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus e2e1dea2bb
gnu: r-abaenrichment: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.0.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus bab06a6ff3
gnu: r-gofuncr: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.4.0.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus bcc233c1a6
gnu: r-atacseqqc: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.0.
[propagated-inputs]: Add r-edger.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus 19ee76379c
gnu: r-genomicscores: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.0.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus aa0ebfd2eb
gnu: r-motifstack: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.28.0.
[propagated-inputs]: Replace r-grimport with r-grimport2.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus f7a495b159
gnu: r-motiv: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.40.0.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus a5860ebe87
gnu: r-rgadem: Update to 2.31.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.31.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus e33c25ff2c
gnu: r-bacon: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.12.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus b7ddf0f048
gnu: r-abseqr: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.2.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus 1aadddeaa9
gnu: r-a4: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.32.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus ae1730ae1a
gnu: r-a4base: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.32.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus e5a36543ac
gnu: r-a4reporting: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.32.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus 0b6091621f
gnu: r-a4preproc: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.32.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus 82de77da5a
gnu: r-a4classif: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.32.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus b077e3db2a
gnu: r-a4core: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.32.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 8bef9df4d4
gnu: r-annaffy: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.56.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 8265a1115e
gnu: r-mlinterfaces: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 1a3e33be23
gnu: r-clusterprofiler: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.12.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 77d28d665c
gnu: r-enrichplot: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.4.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 1990ff9d10
gnu: r-dose: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus ebffd24c10
gnu: r-fgsea: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.10.0.
[propagated-inputs]: Add r-bh.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 3e5ee6f69f
gnu: r-sigpathway: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.52.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 0a41b5db95
gnu: r-anota: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.32.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 24cf7bad99
gnu: r-gosemsim: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.10.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 376d1fe759
gnu: r-heatplus: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.30.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus c2effdedc0
gnu: r-varianttools: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.26.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus bc083ecab8
gnu: r-triform: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.26.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 2ee91179d1
gnu: r-ioniser: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.8.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 48c2a7eb39
gnu: r-linnorm: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.8.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 5551b07cde
gnu: r-lumi: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.36.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 2986b51ffe
gnu: r-methylumi: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.30.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 8c0fae3cd4
gnu: r-minfi: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.30.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 693a98056c
gnu: r-bumphunter: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.26.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 409f4dd652
gnu: r-siggenes: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.58.0.
[propagated-inputs]: Add r-scrime.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus fadc6db82d
gnu: r-illuminaio: Update to 0.26.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.26.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 2d4430877a
gnu: r-geoquery: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.52.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 26c72fffc1
gnu: r-scone: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.8.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 7baa59ed4d
gnu: r-scdd: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.8.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 6a2c58b7e0
gnu: r-noiseq: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.28.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 78b6326785
gnu: r-monocle: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.12.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus a0ff725d6a
gnu: r-mast: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.10.0.
[propagated-inputs]: Add r-blme.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 3fd2ea8883
gnu: r-icobra: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus bcd8b7a9bd
gnu: r-ihw: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.12.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 61c79d55e3
gnu: r-lpsymphony: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.12.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 4a3c47e940
gnu: r-ebseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.24.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 301c4ff12a
gnu: r-deds: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-deds): Update to 1.58.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus d5f3c0d09e
gnu: r-dnacopy: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.58.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus d941918599
gnu: r-copynumber: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.24.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 58a43fc28e
gnu: r-chipexoqual: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.8.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 8d3d0c3abe
gnu: r-savr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.22.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 0aa72f2d1e
gnu: r-destiny: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 2.14.0.
[propagated-inputs]: Remove r-fnn and r-hmisc; add r-ggplot2.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 6fc161fc3e
gnu: r-biocneighbors: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.2.0.
[propagated-inputs]: Add r-biocgenerics and r-rcpphnsw.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus d8771f5fd6
gnu: r-ruvseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.18.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 774e499cec
gnu: r-dnabarcodes: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.14.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 3649d046a6
gnu: r-inspect: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.14.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 5dce71535f
gnu: r-plgem: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.56.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 5bf7eb49f6
gnu: r-rots: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.12.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 07252952b7
gnu: r-glimma: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.12.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 40f0ee43a0
gnu: r-goseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.36.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 7a5d729af1
gnu: r-ctc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.58.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 1236ce8e22
gnu: r-genomicinteractions: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 176a264c7c
gnu: r-interactionset: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.12.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus eff6b2eb12
gnu: r-riboseqr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.18.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 7d5acf7a25
gnu: r-riboprofiling: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.14.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 1ddd4af5a0
gnu: r-chipcomp: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.14.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus c38de81594
gnu: r-bayseq: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.18.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus 4f4bed7de5
gnu: r-qdnaseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.20.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus 2317730994
gnu: r-cghcall: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.46.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus 8efb842f11
gnu: r-cghbase: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.44.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus bcb95b7aac
gnu: r-marray: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.62.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus a61bcb28f7
gnu: r-graph: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.62.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus 588b63c2af
gnu: r-multtest: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.40.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 0968a44874
gnu: r-ripseeker: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.24.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 4c221b3bbf
gnu: r-diffbind: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.12.0.
[propagated-inputs]: Add r-rhtslib; remove r-zlibbioc.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus e02162f7ba
gnu: r-qvalue: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.16.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 3e1bc88c1f
gnu: r-geneplotter: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.62.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 4b53d55e98
gnu: r-regioner: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 43a23a0733
gnu: r-hpar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.26.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus 0c53332a27
gnu: r-annotate: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.62.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus 81a1c45df5
gnu: r-biocgenerics: Update to 0.30.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.30.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus 3addf736d5
gnu: r-systempiper: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus 9bcbca135b
gnu: r-rsamtools: Update to 2.0.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.0.
[propagated-inputs]: Add r-rhtslib.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus 82d9340b0c
gnu: r-impute: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.58.0.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus 2b4ac1d77e
gnu: r-rcas: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.0.
[propagated-inputs]: Add ghc-pandoc.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus 8322c860f9
gnu: r-methylkit: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.10.0.
[propagated-inputs]: Add r-mgcv.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus b173dbe617
gnu: r-annotationhub: Update to 2.16.0. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.0.
[propagated-inputs]: Add r-biocfilecache, r-dplyr, and r-rappdirs.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus a8abc8dd3a
gnu: r-fastseg: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.30.0.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus e699e8e599
gnu: r-keggrest: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.0.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus c798455d87
gnu: r-gage: Update to 2.34.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.34.0.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus d4ef1d59cc
gnu: r-genomicfiles: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.20.0.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus 70a3e4499d
gnu: r-complexheatmap: Update to 2.0.0. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.0.0.
[propagated-inputs]: Add r-clue and r-png.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus e2cb23404c
gnu: r-dirichletmultinomial: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.26.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus 0af6efa3c5
gnu: r-ensembldb: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus 96f98c5b72
gnu: r-organismdbi: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.26.0.
 2019-05-06 00:14:42 +02:00