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7172 Commits

Author SHA1 Message Date
Ricardo Wurmus 0b84a0aaca gnu: Add samtools-0.1.19. 
* gnu/packages/bioinformatics.scm (samtools-0.1): New variable.
 2015-05-04 10:28:27 +02:00
Ricardo Wurmus 41dd712657 gnu: samtools: Install libbam.a library. 
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase
  "install-library" to install the libbam.a library.
 2015-05-04 10:28:26 +02:00
Ricardo Wurmus 0a75450c14 gnu: samtools: Remove patch-makefile-curses phase. 
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Remove
  patch-makefile-curses phase, use make-flags instead.
 2015-05-04 10:28:26 +02:00
Ludovic Courtès 167a05aabc gnu: gcc-5.1: Add specific libvtv patch. 
* gnu/packages/patches/gcc-5.0-libvtv-runpath.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5.1)[source]: Use it.
 2015-05-04 00:24:21 +02:00
Ludovic Courtès 4e9f592058 guix package: Introduce 'evaluate-search-paths'. 
* guix/scripts/package.scm (evaluate-search-paths): New procedure, with
  most of the code formerly in 'search-path-environment-variables'.
  (search-path-environment-variables): Use it.
 2015-05-04 00:24:21 +02:00
Ludovic Courtès 3badccaa73 guix package: Move profile cleaning out of 'search-path-environment-variables'. 
* guix/scripts/package.scm (user-friendly-profile): New procedure.
  (search-path-environment-variables): Remove 'profile' local variable.
  (display-search-paths): Explicitly call 'user-friendly-profile' for
  the argument to 'search-path-environment-variables'.
  (guix-package)[process-query]: Likewise.
 2015-05-04 00:24:21 +02:00
David Hashe 1e7464a9d2 gnu: Add totem-pl-parser. 
* gnu/packages/gnome.scm (totem-pl-parser): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-05-04 00:24:21 +02:00
Christopher Allan Webber 8e9aa37f69 doc: Replace reference to profile.sh with sh-symlink 
* doc/guix.texi (The Store Monad): Replace reference to "profile.sh",
  which is not defined until the next node, with "sh-symlink", which
  is defined immediately above

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-05-04 00:24:21 +02:00
Andreas Enge b4e5d8e7da gnu: Add libe-book. 
* gnu/packages/libreoffice.scm (libe-book): New variable.

Co-authored-by: John Darrington <jmd@gnu.org>
 2015-05-03 22:45:27 +02:00
Ricardo Wurmus 603090d8fe gnu: Add zeromq. 
* gnu/packages/networking.scm (zeromq): New variable.
 2015-05-03 21:49:15 +02:00
Ricardo Wurmus 8a413bcaf5 gnu: rename (gnu packages socat) to (gnu packages networking). 
* gnu/packages/socat.scm: Rename this ...
* gnu/packages/networking.scm: ... to this.
* gnu-system.am (GNU_SYSTEM_MODULES): Change socat.scm to networking.scm.
 2015-05-03 21:48:02 +02:00
Mark H Weaver d5e9f3809d gnu: subversion: Update to 1.8.13. 
* gnu/packages/version-control.scm (subversion): Update to 1.8.13.
 2015-05-03 14:12:21 -04:00
Mark H Weaver a4d5224d74 gnu: gnupg: Update to 2.1.3. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.3.
 2015-05-03 13:22:35 -04:00
Mark H Weaver 7d2b784b66 gnu: Add dovecot. 
* gnu/packages/mail.scm (dovecot): New variable.
 2015-05-03 11:07:45 -04:00
Mark H Weaver 2036a6484e gnu: acpica: Update to 20150410. 
* gnu/packages/admin.scm (acpica): Update to 20150410.
 2015-05-03 11:07:02 -04:00
Mark H Weaver 10d9824092 gnu: wpa-supplicant: Update to 2.4. 
* gnu/packages/admin.scm (wpa-supplicant): Update to 2.4.
 2015-05-03 11:06:52 -04:00
Ludovic Courtès 9b0912b4ba gnu: parallel: Update to 20150422. 
* gnu/packages/parallel.scm (parallel): Update to 20150422.
 2015-05-03 16:01:42 +02:00
Ludovic Courtès dda9c45ec6 gnu: help2man: Update to 1.46.6. 
* gnu/packages/man.scm (help2man): Update to 1.46.6.
 2015-05-03 16:01:42 +02:00
Ludovic Courtès 5ac8a1d4bb gnu: dejagnu: Update to 1.5.3. 
* gnu/packages/dejagnu.scm (dejagnu): Update to 1.5.3.
 2015-05-03 16:01:42 +02:00
Andreas Enge fc15db2f7d gnu: Add libwpd. 
* gnu/packages/libreoffice.scm (libwpd): New variable.
 2015-05-03 14:28:09 +02:00
Andreas Enge 10ca4a1d4b gnu: Add librevenge. 
* gnu/packages/libreoffice.scm (librevenge): New variable.

Co-authored-by: John Darrington <jmd@gnu.org>
 2015-05-03 13:05:58 +02:00
Andreas Enge 28edab7a1e gnu: cppunit: Explicitly link with libdl. 
* gnu/packages/check.scm (cppunit)[arguments]: Add #:make-flags.
 2015-05-03 12:57:40 +02:00
Eric Bavier 2cdfe13dea guix: build: Add transitive source building. 
* guix/scripts/build.scm (%options, options->derivations): Add --sources
  option.
* doc/guix.texi (Invoking guix build): Document --sources option.
* tests/guix-build.sh: Add tests.
 2015-05-02 23:15:40 -05:00
Eric Bavier f77bcbc374 guix: packages: Add package-direct-sources and package-transitive-sources. 
* guix/tests.scm (dummy-origin): New syntax.
* guix/packages.scm (package-direct-sources)
  (package-transitive-sources): New procedures.
* tests/packages.scm ("package-direct-sources, no source")
  ("package-direct-sources, #f source")
  ("package-direct-sources, not input source", "package-direct-sources")
  ("package-transitive-sources"): Test them.
 2015-05-02 23:15:40 -05:00
Ludovic Courtès f4bdfe7381 install: Add bash-completion to the packages. 
* gnu/system/install.scm (installation-os)[packages]: Add
  BASH-COMPLETION.
 2015-05-03 00:08:37 +02:00
Ludovic Courtès dedb17ad01 profiles: Store search paths in manifests. 
Discussed in <http://bugs.gnu.org/20255>.

* guix/packages.scm (sexp->search-path-specification): New variable.
* guix/profiles.scm (<manifest-entry>)[search-paths]: New field.
  (package->manifest-entry): Initialize it.
  (manifest->gexp): Match it.  Wrap #$deps in (propagated-inputs ...).
  Emit (search-paths ...).  Increment version.
  (find-package): New procedure.
  (sexp->manifest)[infer-search-paths]: New procedure.
  Use it to initialize the 'search-paths' field for versions 0 and 1.
  Add case for version 2.
* guix/scripts/package.scm (search-path-environment-variables)[manifest-entry->package]:
  Remove.
  Use 'manifest-entry-search-paths' instead of 'manifest-entry->package'
  plus 'package-native-search-paths'.
* tests/profiles.scm ("profile-manifest, search-paths"): New test.
 2015-05-02 23:57:11 +02:00
Ludovic Courtès b9212a5455 Merge branch 'core-updates' 2015-05-02 22:42:53 +02:00
Ludovic Courtès a413bc8bd3 hydra: Update Guix job set. 
* build-aux/hydra/guix.scm (tarball-package): Remove 'nix-checkout'
  parameter.  Remove 'arguments', 'native-inputs', and 'location'
  fields.  Adjust caller accordingly.
  (hydra-jobs): Remove 'nix-checkout'.
 2015-05-02 22:16:06 +02:00
Ludovic Courtès 2d51666bd0 build-system/gnu: 'dist-package' preserves the package's native inputs. 
* guix/build-system/gnu.scm (dist-package)[native-inputs]: Preserve P's
  native-inputs.
 2015-05-02 22:16:06 +02:00
Ludovic Courtès 16142b3c14 build-system/gnu: Adjust to removal of a "bin" output for Libtool. 
* guix/build-system/gnu.scm (dist-package): Change libtool:bin input to
  just libtool.
 2015-05-02 22:16:06 +02:00
Ricardo Wurmus 5f6887e839 gnu: gcj: Remove broken symlink and conflicting files. 
* gnu/packages/gcc.scm (gcj)[arguments]: Add a build phase to remove a broken
  symlink and generic stump binaries.
 2015-05-02 21:06:52 +02:00
Taylan Ulrich Bayırlı/Kammer 0272ee499d gnu: mesa: Update to 10.5.4. 
* gnu/packages/gl.scm (mesa): Update version to 10.5.4.  Add libxvmc to
  inputs.  Remove python, gettext, flex, and bison from native-inputs.  Remove
  hack that was necessary to prevent rebuilding parts of the build system.
 2015-05-02 10:47:55 +02:00
Taylan Ulrich Bayırlı/Kammer 7e31978b72 gnu: mesa: Add libva input. 
There is a circular dependency between Mesa and libVA, so we use a
libva-no-mesa package that builds libVA without GLX and EGL support, and use
that for building Mesa.

* gnu/packages/gl.scm (libva-for-mesa): New variable.
(mesa): Add as input.
 2015-05-02 10:47:55 +02:00
Mark H Weaver 2d2abb04f8 gnu: linux-libre: Update to 4.0.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.0.1.
 2015-05-01 17:41:07 -04:00
Andreas Enge ad797b75b8 gnu: ebook: Drop circular inclusion of the module into itself. 
* gnu/packages/ebook.scm: Do not import (gnu packages ebook).
 2015-05-01 22:43:08 +02:00
Alex Kost 5eca94594d services: Add console-keymap service. 
* gnu/services/base.scm (console-keymap-service): New procedure.
* doc/guix.texi (Base Services): Document it.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
 2015-05-01 21:00:39 +03:00
Ludovic Courtès 868ef9aec7 bash completion: Complete long options with no short variant. 
* etc/completion/bash/guix (_guix_complete_option): Change grep regexp
  to match options that don't have a short option name.
 2015-05-01 17:39:39 +02:00
Ludovic Courtès cb151c68bf gnu: polkit-qt: Add $libdir to RUNPATH. 
* gnu/packages/polkit.scm (polkit-qt)[arguments]: Add
  #:configure-flags.
 2015-05-01 17:38:44 +02:00
Ludovic Courtès 78bed82d19 check-available-binaries: Use %HYDRA-SUPPORTED-SYSTEMS. 
* build-aux/check-available-binaries.scm: Use %HYDRA-SUPPORTED-SYSTEMS
  instead of %SUPPORTED-SYSTEMS.
 2015-05-01 17:38:09 +02:00
Ludovic Courtès e206f57e95 gnu: mariadb: Remove now unneeded workaround. 
This has been redundant since 21e583d.

* gnu/packages/databases.scm (mariadb)[arguments]: Remove LDFLAGS
  definition.
 2015-05-01 17:34:03 +02:00
Ludovic Courtès 75c5475f31 list-packages: Add status link only for systems supported on Hydra. 
* build-aux/list-packages.scm (package->sxml)[status]:
  Intersect (package-transitive-supported-systems package) with
  %HYDRA-SUPPORTED-SYSTEMS.
 2015-05-01 16:10:08 +02:00
Ludovic Courtès abcbda48c2 packages: Add '%hydra-supported-systems'. 
* build-aux/hydra/gnu-system.scm (%hydra-supported-systems): Remove.
* guix/packages.scm (%hydra-supported-systems): New variable.
 2015-05-01 16:05:40 +02:00
Ludovic Courtès ea7f3349ba gnu: ganv: Set the RUNPATH of binaries to $libdir. 
* gnu/packages/gtk.scm (ganv)[arguments]: Add 'set-ldflags' phase.
 2015-05-01 16:01:49 +02:00
Ludovic Courtès bf4af30bb2 Merge branch 'master' into core-updates 2015-05-01 15:03:30 +02:00
Ludovic Courtès bc7d089a9c serialization: Adjust the permissive UTF-8 decoder to Guile 2.0.12ish. 
* guix/serialization.scm (read-maybe-utf8-string): Use
  'set-port-encoding!' and 'set-port-conversion-strategy!' instead of
  setting '%default-port-encoding' and
  '%default-port-conversion-strategy'.  This accounts for Guile commit
  d574d96, which changes bytevector input ports to use ISO-8859-1.
 2015-05-01 13:10:18 +02:00
Ludovic Courtès 310709ae58 substitute: Fix file descriptor leak in 'http-multiple-get'. 
In practice we would not leak much since we reconnect after ~100
requests (with nginx running on hydra.gnu.org.)

* guix/scripts/substitute.scm (http-multiple-get): Call 'close-port'
  before 'connect'.
 2015-05-01 12:50:27 +02:00
Taylan Ulrich Bayırlı/Kammer 9e63a388d9 gnu: qt: Add patch for i686 build problem. 
See <https://bugreports.qt.io/browse/QTBUG-45205>.

* gnu/packages/patches/qt5-conflicting-typedefs.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qt): Add the patch.
 2015-05-01 01:05:50 +02:00
Ludovic Courtès 0aaca4354c Thank Joshua. 2015-05-01 00:06:18 +02:00
Ludovic Courtès 0d8831370f download: Honor the 'http_proxy' and 'https_proxy' env. vars. 
Fixes <http://bugs.gnu.org/20402>.
Reported by Joshua Randall <jcrandall@alum.mit.edu>.

* guix/download.scm (url-fetch): Pass #:leaked-env-vars to
  'gexp->derivation'.
 2015-05-01 00:06:18 +02:00
Ludovic Courtès c04681554d derivations: Add #:leaked-env-vars parameter. 
Suggested by Joshua Randall <jcrandall@alum.mit.edu>
in <http://bugs.gnu.org/20402>.

* guix/derivations.scm (derivation): Add #:leaked-env-vars parameter.
  [user+system-env-vars]: Honor it.
* guix/gexp.scm (gexp->derivation): Add #:leaked-env-vars and pass it to
  'raw-derivation'.
* doc/guix.texi (Derivations, G-Expressions): Adjust accordingly.
 2015-05-01 00:06:17 +02:00