Commit Graph

28956 Commits

Author SHA1 Message Date
Meiyo Peng cc7f417572
gnu: Add lxqt-runner.
* gnu/packages/lxqt.scm (lxqt-runner): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng af291d1cdf
gnu: Add lxqt-panel.
* gnu/packages/lxqt.scm (lxqt-panel): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng fbe645eafa
gnu: Add libsysstat.
* gnu/packages/lxqt.scm (libsysstat): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng fab3484657
gnu: Add lxqt-globalkeys.
* gnu/packages/lxqt.scm (lxqt-globalkeys): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Pierre Neidhardt 96b4977a19
gnu: Add gx-go.
* gnu/packages/ipfs.scm (gx-go): New variable.
2018-10-24 14:41:44 +02:00
Pierre Neidhardt e82ae67302
gnu: Add go-github-com-whyrusleeping-gx-util.
* gnu/packages/ipfs.scm (go-github-com-whyrusleeping-gx-util): New variable.
2018-10-24 14:41:44 +02:00
Pierre Neidhardt 5b6c3ad0cd
gnu: Add go-github-com-kr-fs.
* gnu/packages/golang.scm (go-github-com-kr-fs): New variable.
2018-10-24 14:41:44 +02:00
Efraim Flashner 96bdf904ac
gnu: dotherside: Update home-page.
* gnu/packages/qt.scm (dotherside)[home-page]: Fix project's home-page.
2018-10-24 14:17:53 +03:00
Pierre Neidhardt 202c1b9703
gnu: Add gx.
* gnu/packages/ipfs.scm (gx): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 566f13f845
gnu: Add go-github-com-ipfs-go-ipfs-api.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 247b1bd2b6
gnu: Add go-github-com-ipfs-go-ipfs-cmdkit-files.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-cmdkit-files): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 56eb7bd33c
gnu: Add go-github-com-whyrusleeping-stump.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-stump): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 38566e975e
gnu: Add go-github-com-whyrusleeping-progmeter.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-progmeter): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 7bd9020e48
gnu: Add go-github-com-whyrusleeping-json-filter.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-json-filter): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt b5bb0b500b
gnu: Add go-github-com-urfave-cli.
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 20f48e4b5d
gnu: Add go-github-com-sabhiram-go-gitignore.
* gnu/packages/golang.scm (go-github-com-sabhiram-go-gitignore): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt ad8d463740
gnu: Add go-github-com-cheekybits-is.
* gnu/packages/golang.scm (go-github-com-cheekybits-is): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 38d346dcc6
gnu: Add go-github-com-whyrusleeping-tar-utils.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-tar-utils): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 66fb6e292a
gnu: Add go-github-com-multiformats-go-multiaddr-net.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr-net): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt e53121b36f
gnu: Add go-github-com-multiformats-go-multiaddr.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 8cb9128173
gnu: Add go-github-com-mitchellh-go-homedir.
* gnu/packages/golang.scm (go-github-com-mitchellh-go-homedir): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 77d8a91792
gnu: Add go-github-com-libp2p-go-libp2p-metrics.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-metrics): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 43a5c17737
gnu: Add go-github-com-libp2p-go-libp2p-protocol.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-protocol): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 1db1e3c79e
gnu: Add go-github-com-libp2p-go-libp2p-peer.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-peer): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 2e42e587b4
gnu: Add go-github-com-multiformats-go-multihash.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multihash): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 9a7f157571
gnu: Add go-github-com-spaolacci-murmur3.
* gnu/packages/golang.scm (go-github-com-spaolacci-murmur3): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 90f2a84805
gnu: Add go-github-com-minio-blake2b-simd.
* gnu/packages/golang.scm (go-github-com-minio-blake2b-simd): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 27d59d8bf5
gnu: Add go-github-com-gxed-hashland-keccakpg.
* gnu/packages/golang.scm (go-github-com-gxed-hashland-keccakpg): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 15272a5053
gnu: Add go-github-com-mr-tron-base58.
* gnu/packages/golang.scm (go-github-com-mr-tron-base58): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 71f3680499
gnu: Add go-github-com-libp2p-go-libp2p-crypto.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-crypto): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt ff2d11c3ce
gnu: Add go-github-com-minio-sha256-simd.
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt d5599afadf
gnu: Add go-github-com-btcsuite-btcd-btcec.
* gnu/packages/golang.scm (go-github-com-btcsuite-btcd-btcec): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 171c3259fc
gnu: Add go-github-com-btcsuite-btclog.
* gnu/packages/golang.scm (go-github-com-btcsuite-btclog): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 6a95e3a3a4
gnu: Add go-github-com-davecgh-go-spew.
* gnu/packages/golang.scm (go-github-com-davecgh-go-spew): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 386bd7ba39
gnu: Add go-github-com-libp2p-go-flow-metrics.
* gnu/packages/golang.scm (go-github-com-libp2p-go-flow-metrics): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 48a279ee14
gnu: go-golang-org-x-crypto-union: Wrap all crypto packages.
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Include
go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160,
go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3 in union.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 19789c8b91
gnu: Add go-golang-org-x-crypto-sha3.
* gnu/packages/golang.scm (go-golang-org-x-crypto-sha3): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 6fa257cca7
gnu: Add go-golang-org-x-crypto-blake2s.
* gnu/packages/golang.scm (go-golang-org-x-crypto-blake2s): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt a9010ead4c
gnu: Add go-golang-org-x-crypto-ripemd160.
* gnu/packages/golang.scm (go-golang-org-x-crypto-ripemd160): New variable.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 7eb0ad380b
gnu: Add go-golang-org-x-crypto-ed25519.
* gnu/packages/golang.scm (go-golang-org-x-crypto-ed25519): New variable.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 830dc25176
gnu: Move go-golang-org-x-crypto-union from syncthing.scm to golang.scm
* gnu/packages/syncthing.scm (go-golang-org-x-crypto-union): Delete.
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Add.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 5787e15230
gnu: Move go-github-com-gogo-protobuf* from syncthing.scm to golang.scm
* gnu/packages/syncthing.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Delete.

* gnu/packages/golang.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Add.
2018-10-24 10:46:05 +02:00
Tobias Geerinckx-Rice 569adffe4b
gnu: pcsc-lite: Update to 1.8.24.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.24.
2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice 716cd19ad2
gnu: loksh: Update to 6.4.
* gnu/packages/shells.scm (loksh): Update to 6.4.
[inputs]: Add ncurses.
2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice e5d757709a
gnu: loksh: Don't use unstable tarball.
* gnu/packages/shells.scm (loksh)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-24 05:59:35 +02:00
Tobias Geerinckx-Rice d0d3ed6dfc
gnu: tinc: Update to 1.0.35 [fixes CVE-2018-{16737,16738,16758}].
* gnu/packages/vpn.scm (tinc): Update to 1.0.35.
2018-10-24 05:59:35 +02:00
Mark H Weaver ce7ceef37f
gnu: linux-libre: Update to 4.19.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.
(%linux-libre-hash): Update hash.
(%linux-libre-4.18-patches): Rename to ...
(%linux-libre-4.19-patches): ... this, and remove a patch that is
no longer needed.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-4.19-patches instead of %linux-libre-4.18-patches.
* gnu/packages/aux-files/linux-libre/4.18-arm.conf,
gnu/packages/aux-files/linux-libre/4.18-arm64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf,
gnu/packages/aux-files/linux-libre/4.18-x86_64.conf: Remove files.
* gnu/packages/aux-files/linux-libre/4.19-arm.conf,
gnu/packages/aux-files/linux-libre/4.19-arm64.conf,
gnu/packages/aux-files/linux-libre/4.19-i686.conf,
gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2018-10-23 22:57:14 -04:00
Tobias Geerinckx-Rice d9bcdfce29
gnu: mongodb: Use INVOKE.
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 94617bddb0
gnu: libbytesize: Update to 1.4.
* gnu/packages/c.scm (libbytesize): Update to 1.4.
[source]: Parametrise.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 50f5aa4b9e
gnu: xmlsec: Update to 1.2.27.
* gnu/packages/xml.scm (xmlsec): Update to 1.2.27.
[source]: Don't rely on NAME.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 0ba0ab814a
gnu: Add wavemon.
* gnu/packages/hardware.scm (wavemon): New public variable.
2018-10-24 03:58:20 +02:00
Mark H Weaver d78587edca
gnu: icecat: Add fixes from mozilla-esr60 [security fixes].
Includes fixes for CVE-2018-12389, CVE-2018-12390, CVE-2018-12391,
CVE-2018-12392, CVE-2018-12393, CVE-2018-12395, CVE-2018-12396, and
CVE-2018-12397.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected changesets from the
upstream mozilla-esr60 repository.  Relabel some previously existing patches
to reflect CVE assignments.
2018-10-23 19:41:47 -04:00
Brett Gilio b4237a6ec0
gnu: emacs-nov-el: Update to 0.2.6.
* gnu/packages/emacs.scm (emacs-nov-el): Update to 0.2.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-23 23:58:39 +02:00
Leo Famulari 12995856e2
gnu: libssh: Fetch the source code more efficiently.
* gnu/packages/ssh.scm (libssh)[source]: Use the git:// protocol.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-23 23:58:39 +02:00
Laura Lazzati b55697fbb4
gnu: Add r-aspi.
* gnu/packages/cran.scm (r-aspi): New variable.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-10-23 23:20:13 +02:00
Pierre Neidhardt d89872f955
gnu: sbcl-parse-float: Remove comment about license.
* gnu/packages/lisp.scm (sbcl-parse-float): The license really is public domain.
2018-10-23 20:36:58 +02:00
Meiyo Peng bf076d8ba6
gnu: Add libstatgrab.
* gnu/packages/lxqt.scm (libstatgrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 22:39:09 +08:00
Meiyo Peng 64fac507dd
gnu: Add libdbusmenu-qt.
* gnu/packages/lxqt.scm (libdbusmenu-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 22:23:49 +08:00
Meiyo Peng d58aefdf06
gnu: lxqt.scm: Sort packages alphabetically.
* gnu/packages/lxqt.scm: Sort packages alphabetically.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:37:48 +08:00
Meiyo Peng 088096aa0e
gnu: lxqt-build-tools: Update download URL and home page URL.
* gnu/packages/lxqt.scm (lxqt-build-tools)
[source]: Update download URL to the 'lxqt' repository.
[home-page]: Use HTTPS.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:33:45 +08:00
Meiyo Peng 70c488f8dd
gnu: lxqt-session: Update to 0.13.0.
* gnu/packages/lxqt.scm (lxqt-session): Update to 0.13.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:29:55 +08:00
Nicolas Goaziou f0ac761f95
gnu: grammalecte: Update home page.
* gnu/packages/dictionaries.scm (grammalecte)[home-page]: Update URL.
2018-10-23 09:59:16 +02:00
Leo Famulari a89f731b15
gnu: Xiph: Use HTTPS URLs.
* gnu/packages/xiph.scm (libogg, libvorbis, libtheora, speex, speexdsp, ao,
flac, libkate, vorbis-tools, opus-tools opusfile, icecast, libshout)[source]:
Use HTTPS URLs.
(icecast)[home-page]: Use HTTPS URL.
2018-10-23 00:18:17 -04:00
Leo Famulari a640492f6d
gnu: Opus: Update to 1.3.
* gnu/packages/xiph.scm (opus): Update to 1.3.
2018-10-23 00:18:17 -04:00
Leo Famulari d0ff383ed8
gnu: opus-tools: Update to 0.2.
* gnu/packages/xiph.scm (opus-tools): Update to 0.2.
[native-inputs]: Add pkg-config.
[inputs]: Add libopusenc and opusfile. Remove libogg and opus.
2018-10-23 00:18:17 -04:00
Leo Famulari 844b3272da
gnu: opusfile: Propagate dependencies required in pkg-config.
* gnu/packages/xiph.scm (opusfile)[inputs]: Move libogg and openssl to
propagated-inputs.
2018-10-23 00:18:17 -04:00
Leo Famulari ce08d54c35
gnu: Add libopusenc.
* gnu/packages/xiph.scm (libopusenc): New variable.
2018-10-23 00:18:13 -04:00
Tobias Geerinckx-Rice d6a9c4ecfb
gnu: unbound: Update to 1.8.1.
* gnu/packages/dns.scm (unbound): Update to 1.8.1.
2018-10-23 04:18:50 +02:00
Tobias Geerinckx-Rice 661da25133
gnu: Remove duplicate import from (gnu packages messaging).
* gnu/packages/messaging.scm (define-module): Remove duplicate module
import.  Order the remainder alphabetically.
2018-10-23 04:18:40 +02:00
Tobias Geerinckx-Rice ee5c83533d
gnu: cppcheck: Update to 1.85.
* gnu/packages/check.scm (cppcheck): Update to 1.85.
2018-10-23 03:14:31 +02:00
Tobias Geerinckx-Rice 3891c38346
gnu: bs1770gain: Update to 0.5.1.
* gnu/packages/audio.scm (bs1770gain): Update to 0.5.1.
2018-10-23 03:14:30 +02:00
Tobias Geerinckx-Rice 2820e31590
gnu: zstd: Update to 1.3.7.
* gnu/packages/compression.scm (zstd): Update to 1.3.7.
2018-10-23 03:14:30 +02:00
Marius Bakke 63abd1e2a3
gnu: python-pymongo: Update to 3.7.2.
* gnu/packages/python.scm (python-pymongo): Update to 3.7.2.
2018-10-22 23:01:19 +02:00
Marius Bakke 47d7c10387
gnu: python-sure: Update to 1.4.11.
* gnu/packages/python.scm (python-sure): Update to 1.4.11.
2018-10-22 23:01:19 +02:00
Marius Bakke 9b9aaa57e3
gnu: python-markdown: Update to 3.0.1.
* gnu/packages/python.scm (python-markdown): Update to 3.0.1.
[arguments]: Remove.
2018-10-22 23:01:19 +02:00
Marius Bakke 1b50df7d5b
gnu: python-markdown: Update home page.
* gnu/packages/python.scm (python-markdown)[home-page]: Change to current.
2018-10-22 23:01:19 +02:00
Marius Bakke cb61baf0e7
gnu: python-m2crypto: Update to 0.30.1.
* gnu/packages/python-crypto.scm (python-m2crypto): Update to 0.30.1.
2018-10-22 23:01:19 +02:00
Marius Bakke e810de3e68
gnu: python-m2crypto: python-typing is only needed for python2.
* gnu/packages/python-crypto.scm (python-m2crypto)[propagated-inputs]: Remove.
[properties]: New field.
(python2-m2crypto)[propagated-inputs]: Add PYTHON2-TYPING.
2018-10-22 23:01:19 +02:00
Marius Bakke 90fb136ff7
gnu: xorg-server: Update to 1.20.2.
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.2.
2018-10-22 23:01:19 +02:00
Marius Bakke 4350cacdf7
gnu: xf86-input-libinput: Update to 0.28.1.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.28.1.
2018-10-22 23:01:18 +02:00
Marius Bakke 3743e117a6
gnu: libmd: Update to 1.0.1.
* gnu/packages/crypto.scm (libmd): Update to 1.0.1.
2018-10-22 23:01:18 +02:00
Marius Bakke f38eedd518
gnu: samba: Update to 4.8.6.
* gnu/packages/samba.scm (samba): Update to 4.8.6.
2018-10-22 23:01:18 +02:00
Marius Bakke 3ad0a35890
gnu: Add GN.
* gnu/packages/build-tools.scm (gn): New public variable.
2018-10-22 23:01:18 +02:00
Marius Bakke f232c875d2
gnu: python-lazy-object-proxy: Update to 1.3.1.
* gnu/packages/python.scm (python-lazy-object-proxy): Update to 1.3.1.
2018-10-22 23:01:18 +02:00
Marius Bakke b45688313b
gnu: python-mistune: Update to 0.8.4.
* gnu/packages/python.scm (python-mistune): Update to 0.8.4.
2018-10-22 23:01:18 +02:00
Meiyo Peng 9861bcd182
gnu: liblxqt: Update to 0.13.0.
* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
Meiyo Peng 50401c2a68
gnu: libqtxdg: Update to 3.2.0.
* gnu/packages/lxqt.scm (libqtxdg): Update to 3.2.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
Christopher Lemmer Webber 51f4e36cb9
gnu: Add emacs-scribble-mode.
* gnu/packages/emacs.scm (emacs-scribble-mode): New variable.
2018-10-22 09:59:42 -04:00
Nicolas Goaziou 3a352a4405
gnu: snap: Update to 4.2.2.2.
* gnu/packages/education.scm (snap): Update to 4.2.2.2.  Update source URL.
2018-10-22 15:56:38 +02:00
Ricardo Wurmus 09aa3d063a
gnu: Add r-ruvseq.
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
2018-10-22 13:00:24 +02:00
Leo Famulari 318ec0a896
gnu: livemedia-utils: Update to 2018.10.17 [fixes CVE-2018-4013].
* gnu/packages/video.scm (livemedia-utils): Update to 2018.10.17.
2018-10-22 03:37:53 -04:00
Leo Famulari 69c69c2d8e
gnu: libmpdclient: Update to 2.16.
* gnu/packages/mpd.scm (libmpdclient): Update to 2.16.
2018-10-21 23:55:28 -04:00
Tobias Geerinckx-Rice dc3dfa131f
gnu: knot: Update to 2.7.3.
* gnu/packages/dns.scm (knot): Update to 2.7.3.
2018-10-22 00:40:05 +02:00
Leo Famulari df71447e99
gnu: OpenSSH: Update to 7.9p1.
* gnu/packages/ssh.scm (openssh): Update to 7.9p1.
2018-10-21 18:33:58 -04:00
Pierre Langlois ff598353c0
gnu: light: Update to 1.2.
* gnu/packages/linux.scm (light): Update to 1.2.
[source]: Switch to url-fetch.
[arguments]: Remove.
[native-inputs]: Remove help2man. Add autoconf and automake.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-21 23:54:46 +02:00
Luther Thompson 16d212510a
gnu: Add python-ilinkedlist.
* gnu/packages/python.scm (python-ilinkedlist): New variable.
2018-10-21 23:54:46 +02:00
Ricardo Wurmus f8ee22fc8b
gnu: flexbar: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (flexbar): Update to 3.4.0.
[source]: Fetch from git.
[arguments]: Adjust check and install phases.
[home-page]: Update to new home at Github.
[license]: Change to bsd-3.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 4d93a9a36c
gnu: seqan: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (seqan): Update to 2.4.0.
[native-inputs]: Replace bzip2 with xz.
(seqan-1): New variable.
(tophat)[inputs]: Use seqan-1.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 4b8f4536ce
gnu: khmer: Update to 2.1.2.
* gnu/packages/bioinformatics.scm (khmer): Update to 2.1.2.
[source]: Fetch from git; remove bundled libraries in snippet.
[arguments]: Remove "set-paths" phase; remove "post-install-check" phase;
remove "reset-gzip-timestamps" phase.
[native-inputs]: Remove seqan and python-nose; add python-cython,
python-pytest, and python-pytest-runner.
[inputs]: Remove gcc-4.9.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 50e33c3a8c
gnu: python-screed: Update to 1.0.
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.0.
[arguments]: Run tests after installation.
[native-inputs]: Add python-pytest, python-pytest-cov, and
python-pytest-runner; remove python-nose.
2018-10-21 23:06:47 +02:00