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17039 Commits

Author SHA1 Message Date
Roel Janssen aa184803f8
gnu: Add r-pkgconfig. 
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
 2017-08-02 00:21:40 +02:00
Marius Bakke fc8f0631b4
gnu: re2: Update to 2017-08-01. 
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
 2017-08-01 23:37:20 +02:00
Marius Bakke 1926fd2baa
gnu: maim: Update to 5.4.66. 
* gnu/packages/xdisorg.scm (maim): Update to 5.4.66.
 2017-08-01 23:35:31 +02:00
Marius Bakke 7d960db1e3
gnu: slop: Update to 7.3.48. 
* gnu/packages/xdisorg.scm (slop): Update to 7.3.48.
 2017-08-01 23:35:03 +02:00
Marius Bakke b73e49f595
gnu: git: Update to 2.13.4. 
* gnu/packages/version-control.scm (git): Update to 2.13.4.
 2017-08-01 23:34:41 +02:00
Roel Janssen 14fce399cc
gnu: r-foreign: Update hash after upstream tarball change. 
* gnu/packages/statistics.scm (r-foreign):  Update hash.  The only difference
  in the tarball is the metadata.  The contents are identical.
 2017-08-01 23:07:58 +02:00
Roel Janssen cdf124c607
gnu: r-foreign: Remove duplicate recipe. 
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
 2017-08-01 23:06:02 +02:00
Leo Famulari d0386db493
gnu: rapidjson: Update to 1.1.0. 
* gnu/packages/web.scm (rapidjson): Update to 1.1.0.
[source]: Remove snippet.
 2017-08-01 14:42:44 -04:00
ng0 f2e1271809
gnu: Add pidentd. 
* gnu/packages/networking.scm (pidentd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-08-01 20:57:51 +03:00
Kei Kebreau 89c9445aa2
gnu: hyperrogue: Update to 10.0e. 
* gnu/packages/games.scm (hyperrogue): Update to 10.0e.
[arguments]: Adjust accordingly.
 2017-08-01 12:14:54 -04:00
Efraim Flashner d931a4bbeb
gnu: metabat: Limit to x86_64 and i686 only. 
* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field.
 2017-08-01 17:28:35 +03:00
Kyle Meyer 4bfdf034e2
gnu: Add emacs-yasnippet-snippets. 
* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-01 15:33:07 +02:00
Kyle Meyer 1f0d47059d
gnu: emacs-yasnippet: Upgrade to 0.12.0. 
* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0.
[source]: Remove an uninstalled directory from yas-snippet-dirs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-01 15:32:59 +02:00
Ludovic Courtès 04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-08-01 15:32:07 +02:00
Adonay Felipe Nogueira 12235a124f
gnu: artanis: Unbundled guile-json and version according to documentation. 
* gnu/packages/guile.scm (artanis): Unbundled guile-json and version
according to documentation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-01 15:32:07 +02:00
Muriithi Frederick Muriuki 269504a797
gnu: python-pbr-minimal: Update to 3.0.1 
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-08-01 15:21:52 +03:00
Leo Famulari 3d0fbd3c2f
gnu: libgit2: Enable SHA-1 collision detection. 
* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC'
in #:configure-flags.
 2017-08-01 01:02:53 -04:00
Ben Woodcroft befb2c0e6e
gnu: ruby-bio-commandeer: Update to 0.2.0. 
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0.
 2017-08-01 14:09:07 +10:00
Ludovic Courtès e1ecc8908e
gnu: libmicrohttpd: Update to 0.9.55. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55.
[arguments]: Add 'add-missing-LDFLAGS' phase.
 2017-07-31 22:51:34 +02:00
Ludovic Courtès a6b5af0cff
gnu: xf86-video-intel: Update snapshot. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa.
Introduce 'revision' variable.
 2017-07-31 22:10:34 +02:00
Ludovic Courtès f0732ee485
gnu: guile-bytestructures: Install .go files to lib/guile/X.Y. 
* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Install .go
files to OBJECT-DIR, defined as OUT/lib/guile/X.Y/site-ccache.
 2017-07-31 17:36:24 +02:00
ng0 54727850c3
gnu: tor: Remove '--enable-expensive-hardening' option. 
* gnu/packages/tor.scm (tor)[arguments]: Remove '--enable-expensive-hardening' option.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-31 17:06:45 +02:00
Peter Mikkelsen ee217402f7
gnu: erlang: Update to 20.0. 
* gnu/packages/erlang.scm (erlang): Update to 20.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-31 17:02:36 +02:00
Ludovic Courtès c27e02bf6b
gnu: network-manager: Add dependency on Newt. 
Suggested by Mark H Weaver.

* gnu/packages/gnome.scm (network-manager)[inputs]: Add NEWT.
 2017-07-31 15:23:06 +02:00
Ludovic Courtès 44b0faee6b
gnu: guile-git: Skip faulty tests on non-x86_64. 
Reported by Mark H Weaver.

* gnu/packages/guile.scm (guile-git)[arguments]: Add 'skip-tests' phase
unless on x86_64-linux.
 2017-07-31 15:23:06 +02:00
Ludovic Courtès 8ecba89b77
gnu: libgit2: Add "debug" output. 
* gnu/packages/version-control.scm (libgit2)[outputs]: New field.
 2017-07-31 15:23:06 +02:00
Ludovic Courtès 58dce7bfb5
gnu: libgit2: Update to 0.26.0. 
* gnu/packages/version-control.scm (libgit2): Update to 0.26.0.  Remove
"libgit2-use-after-free.patch".
* gnu/packages/patches/libgit2-use-after-free.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-31 15:23:05 +02:00
Efraim Flashner 6ce8fe4cd0
gnu: efl: Add wayland support. 
* gnu/packages/enlightenment.scm (efl)[inputs]: Add wayland-protocols.
Move mesa ...
[propagated-inputs]: ... to here. Add libinput, libxkbcommon, wayland.
[arguments]: Add flags to enable wayland, elput and drm.
 2017-07-31 15:16:23 +03:00
Efraim Flashner 0d3ecf77ba
gnu: gst-plugins-good: Update disable-failing-tests phase. 
* gnu/packages/gstreamer.scm (gst-plugins-good)[arguments]: Change the
list of tests to disable during 'disable-failing-tests phase.
 2017-07-31 15:16:21 +03:00
Ludovic Courtès 706448b193
gnu: automake: Add 1.15.1. 
* gnu/packages/autotools.scm (automake/latest): New variable.
 2017-07-30 22:31:10 +02:00
Ludovic Courtès c91171627b
gnu: guix: Search .go files of dependencies in lib/guile/. 
* gnu/packages/package-management.scm (guix)[arguments]: Add (srfi
srfi-26) to #:modules.  Introduce 'gopath', distinct from 'path'.
 2017-07-30 21:36:18 +02:00
Ludovic Courtès 1c0ee79d4d
gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix): Update to 228a398.
 2017-07-30 17:58:04 +02:00
Marius Bakke c918773a03
gnu: ffmpeg: Update to 3.3.3. 
* gnu/packages/video.scm (ffmpeg): Update to 3.3.3.
 2017-07-30 12:49:38 +02:00
Christopher Baines fa65e84aab
gnu: qemu: Build with support for Linux AIO 
Add libaio as an input, such that QEMU is built with support for Asynchronous
I/O (AIO).

* gnu/packages/virtualization.scm (qemu)[inputs]: Uncomment libaio.
 2017-07-30 09:56:00 +01:00
Christopher Baines 686144e986
gnu: Add memcached. 
* gnu/packages/databases.scm (memcached): New variable.
 2017-07-30 09:06:52 +01:00
宋文武 c00c90ca37
gnu: retroarch: Update to 1.6.3. 
* gnu/packages/games.scm (retroarch): Update to 1.6.3.
 2017-07-30 15:15:34 +08:00
Theodoros Foradis 85cdab64c6
gnu: yosys: Add dependency on z3. 
* gnu/packages/fpga.scm (yosys): Add z3 to propagated-inputs.
 2017-07-29 23:03:47 +02:00
Theodoros Foradis 313844d9dc
gnu: Add z3. 
* gnu/packages/maths.scm (z3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-29 23:03:47 +02:00
Peter Mikkelsen a4078acf4a
gnu: erlang: Fix man-pages search path of 'erl -man'. 
* gnu/packages/patches/erlang-man-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/erlang.scm (erlang)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-29 23:03:47 +02:00
Oleg Pykhalov 53ac6977ac
gnu: tome4: Clean up snippet. 
* gnu/packages/games.scm (tome4)[source](snippet): Use a single
'substitute*' call instead of 'for-each'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-29 23:03:47 +02:00
Marius Bakke baa6b77789
gnu: vim: Update to 8.0.0808. 
* gnu/packages/vim.scm (vim): Update to 8.0.0808.
[arguments]: Remove obsolete 'make-bit-reproducable' phase.
(vim-full): Update to 8.0.0808.
[arguments]: Remove 'drop-failing-tests' phase.
 2017-07-29 23:01:17 +02:00
Kyle Meyer 24b115dff5
gnu: emacs: Check GUIX_ENVIRONMENT when autoloading packages. 
Check the environment profile so that we autoload packages that are given as
arguments to "guix environment" but are not in the system or user profile.
Note that the union of Emacs packages in the system, user, and environment
profiles will be autoloaded even when --pure was passed to "guix environment",
because it's not clear how to detect that --pure was given.

* gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs-autoload-packages):
Add Emacs packages from GUIX_ENVIRONMENT profile.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-07-29 23:19:17 +03:00
Kyle Meyer d0a5205292
gnu: Remove emacs-seq. 
The seq.el library has been included with Emacs since version 25.1.

* gnu/packages/emacs.scm (emacs-seq): Remove variable.
(flycheck, emacs-cider)[propagated-inputs]: Remove emacs-seq.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-07-29 23:19:17 +03:00
Kyle Meyer 469c7ce058
gnu: Remove let-alist. 
The let-alist package has been included with Emacs since version 25.1.

* gnu/packages/emacs.scm (let-alist): Remove variable.
(flycheck, emacs-pdf-tools, emacs-sx)[propagated-inputs]: Remove let-alist.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-07-29 23:19:16 +03:00
Alex Kost b1a6a70684
gnu: emacs-ess: Install elisp files in "guix.d". 
Fixes <http://bugs.gnu.org/27686>.
Reported by Adonay Felipe Nogueira <adfeno@openmailbox.org>.

* gnu/packages/emacs.scm (emacs-ess)[arguments]: Add LISPDIR to
'make-flags' to install *.el files into "guix.d" sub-directory.
 2017-07-29 23:18:56 +03:00
Danny Milosavljevic 444f9dccc2
gnu: grub-efi: Add mtools input. 
* gnu/packages/bootloaders.scm: Add (gnu packages mtools).
(grub-efi)[inputs]: Add mtools.
[arguments]: Add phase "use-absolute-mtools-path".
 2017-07-29 19:24:04 +02:00
Julien Lepiller 303690c405
gnu: Add coq-interval. 
* gnu/packages/ocaml.scm (coq-interval): New variable.
 2017-07-29 15:19:07 +02:00
Julien Lepiller b09c4244f7
gnu: Add coq-coquelicot. 
* gnu/packages/ocaml.scm (coq-coquelicot): New variable.
 2017-07-29 15:19:03 +02:00
Julien Lepiller 380c65de94
gnu: Add coq-mathcomp. 
* gnu/packages/ocaml.scm (coq-mathcomp): New variable.
 2017-07-29 15:18:59 +02:00
Julien Lepiller 88191acee2
gnu: Add coq-gappa. 
* gnu/packages/ocaml.scm (coq-gappa): New variable.
 2017-07-29 15:18:54 +02:00
Julien Lepiller d163d97d92
gnu: Add coq-flocq. 
* gnu/packages/ocaml.scm (coq-flocq): New variable.
 2017-07-29 15:18:45 +02:00
Marius Bakke 8f82110492
gnu: gnupg: Update to 2.1.22. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.22.
 2017-07-29 14:47:24 +02:00
Ben Woodcroft a9085f0c5c
gnu: metabat: Update to 2.11.2. 
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.2.
 2017-07-29 22:37:47 +10:00
Jan Nieuwenhuizen 0e016722ee
gnu: mes: Update to 0.9. 
* gnu/packages/mes.scm (mes): Update to 0.9.
[arguments]: Delete `strip' phase.
[synopsis]: Rewrite to be more descriptive.
[description]: Include expanded acronym.
 2017-07-29 14:33:19 +02:00
Tobias Geerinckx-Rice 9f9b7a0d01
gnu: gptfdisk: Update to 1.0.3. 
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.3.
 2017-07-29 14:15:48 +02:00
Arun Isaac b5244fcb49
gnu: arandr: Remove make-xrandr-available phase. 
wrap-program functionality is already provided by python-build-system.

* gnu/packages/xdisorg.scm (arandr): Remove make-xrandr-available phase.
 2017-07-29 16:47:37 +05:30
Oleg Pykhalov e8d9a87862
gnu: Add emacs-rpm-spec-mode. 
* gnu/packages/emacs.scm (emacs-rpm-spec-mode): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-07-29 16:41:34 +05:30
Jan Nieuwenhuizen 3b56776fb8
gnu: mescc-tools: Update to 0.2. 
* gnu/packages/mes.scm (mescc-tools): Update to 0.2.
 2017-07-29 11:37:04 +02:00
Mark H Weaver 38ba8a6116
gnu: linux-libre: Update to 4.12.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.4.
(%linux-libre-hash): Update hash.
 2017-07-28 21:08:51 -04:00
Mark H Weaver dfa0c66cc9
gnu: linux-libre@4.9: Update to 4.9.40. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.40.
 2017-07-28 21:08:19 -04:00
Mark H Weaver 6b96478c6d
gnu: linux-libre@4.4: Update to 4.4.79. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.79.
 2017-07-28 21:07:31 -04:00
Tobias Geerinckx-Rice 4f9dd97e65
gnu: sssd: Update to 1.15.3. 
* gnu/packages/sssd.scm (sssd): Update to 1.15.3.
[native-inputs]: Add util-linux.
 2017-07-29 01:08:17 +02:00
Tobias Geerinckx-Rice d02e19aa2c
gnu: bind: Update to 9.11.2. 
* gnu/packages/dns.scm (isc-bind): Update to 9.11.2.
 2017-07-29 00:32:00 +02:00
Oleg Pykhalov 32c4a5060e
gnu: emacs-auctex: Update to 11.91.0. 
* gnu/packages/emacs.scm (emacs-auctex): Update to 11.91.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-28 23:30:41 +02:00
Oleg Pykhalov 1f88f189eb
gnu: Add tome4. 
* gnu/packages/games.scm (tome4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-28 23:30:41 +02:00
Ludovic Courtès 9ca8aa38ec
gnu: guix: Add dependency on Guile-Git. 
* gnu/packages/package-management.scm (guix)[arguments] <wrap-program>:
Add Guile-Git to PATH.
[propagated-inputs]: Add GUILE-GIT.
(guile2.0-guix)[propagated-inputs]: Add GUILE2.0-GIT.
 2017-07-28 18:09:44 +02:00
Ludovic Courtès 3a53759807
gnu: guile-git: Update snapshot. 
* gnu/packages/guile.scm (guile-git): Update to commit e156a10.
[native-inputs]: Add TEXINFO.
 2017-07-28 18:09:43 +02:00
Ludovic Courtès 6f0f55148d
gnu: le-certs: Create OpenSSL hash symlinks. 
* gnu/packages/certs.scm (le-certs)[arguments]: Run 'c_rehash' on the
result.
[native-inputs]: New fields.
 2017-07-28 18:09:43 +02:00
Tobias Geerinckx-Rice c4b006ba12
gnu: btrfs-progs: Update to 4.12. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.12.
[outputs]: Remove inaccurate comment on size.
 2017-07-28 16:32:04 +02:00
Ben Woodcroft f112bd26ae
gnu: redis: Update to 4.0.1. 
* gnu/packages/databases.scm (redis): Update to 4.0.1.
 2017-07-28 21:10:49 +10:00
Ben Woodcroft ac01cb0790
gnu: ruby-json-pure: Update to 2.1.0. 
* gnu/packages/ruby.scm (ruby-json-pure): Update to 2.1.0.
[arguments]: Replace 'replace-git-ls-files' phase with 'fix-rakefile'
and 'regenerate-gemspec' phases.
[inputs]: Remove ruby-permutation, ruby-utils, ragel. Add ruby-test-unit,
ruby-simplecov.
 2017-07-28 20:18:53 +10:00
Ben Woodcroft 9c14bc7a4d
gnu: bundler: Update to 1.15.3. 
* gnu/packages/ruby.scm (bundler): Update to 1.15.3.
 2017-07-28 20:18:53 +10:00
Ben Woodcroft a2a558147a
gnu: ruby-ffi: Update to 1.9.18. 
* gnu/packages/ruby.scm (ruby-ffi): Update to 1.9.18.
 2017-07-28 20:18:52 +10:00
Ben Woodcroft 00eeb45fca
gnu: redis: Update to 4.0.0. 
* gnu/packages/databases.scm (redis): Update to 4.0.0.
 2017-07-28 20:18:52 +10:00
Ben Woodcroft efb94fda64
gnu: ruby-nokogiri: Update to 1.8.0. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.8.0.
 2017-07-28 20:18:52 +10:00
Ben Woodcroft 26f4a37736
gnu: ruby-mini-portile2: Update to 2.2.0. 
* gnu/packages/ruby.scm (ruby-mini-portile2): Update to 2.2.0.
 2017-07-28 20:18:51 +10:00
Tobias Geerinckx-Rice 0f6cf5a61c
gnu: nautilus: Update to 3.24.2.1. 
* gnu/packages/gnome.scm (nautilus): Update to 3.24.2.1.
 2017-07-28 01:02:40 +02:00
Tobias Geerinckx-Rice 73fe4552aa
gnu: gptfdisk: Update description. 
* gnu/packages/disk.scm (gptfdisk): Remove outdated statement and use @dfn.
 2017-07-28 01:02:39 +02:00
Tobias Geerinckx-Rice 0193e3be53
gnu: goffice: Update to 3.24.2.1. 
* gnu/packages/gnome.scm (goffice): Update to 3.24.2.1.
 2017-07-28 01:02:39 +02:00
Tobias Geerinckx-Rice c8fc9a379b
gnu: shotwell: Update to 0.26.2. 
* gnu/packages/gnome.scm (shotwell): Update to 0.26.2.
 2017-07-28 01:02:39 +02:00
Marius Bakke fb2715720a
gnu: whois: Update to 5.2.17. 
* gnu/packages/networking.scm (whois): Update to 5.2.17.
 2017-07-28 00:07:45 +02:00
Marius Bakke bd51224936
gnu: nss, nss-certs: Update to 3.32. 
This release includes minor code changes and many certificate updates:
<https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes>

* gnu/packages/certs.scm (nss-certs): Update to 3.32.
* gnu/packages/gnuzilla.scm (nss): Update to 3.32.
[arguments]: Prevent another test file from being installed.
* gnu/packages/patches/nss-pkgconfig.patch: Adjust.
 2017-07-28 00:07:28 +02:00
Marius Bakke 6571754462
gnu: nspr: Update to 4.16. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.16.
 2017-07-27 22:15:27 +02:00
Marius Bakke 90335ccea6
gnu: python-cryptography: Update to 2.0.2. 
* gnu/packages/python.scm (python-cryptography-vectors, python-cryptography):
Update to 2.0.2.
 2017-07-27 22:15:26 +02:00
Leo Famulari b2973d9634
gnu: subversion: Update to 1.8.18. 
* gnu/packages/version-control.scm (subversion): Update to 1.8.18.
 2017-07-27 14:33:32 -04:00
Leo Famulari 6d31c175b2
gnu: net-tools: Update to 1.60-0.479bb4a7. 
This leaves net-tools-for-tests unchanged.

Fixes <https://bugs.gnu.org/27811>.

* gnu/packages/linux.scm (net-tools): Update to 1.60-0.479bb4a7.
[source]: Use git-fetch.
[inputs]: Remove the Debian patch.
[arguments]: Use modify-phases. Remove the 'patch' phase. Disable
SELINUX and AFBLUETOOTH from build configuration.
 2017-07-27 13:39:42 -04:00
Julian Graham a812aff99c
gnu: gzochi: Update to 0.11.1. 
* gnu/packages/game-development.scm (gzochi): Update to 0.11.1.
  (gzochi)[arguments]: Remove patch for `-Werror', which is no longer
  necessary.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-27 11:47:51 +02:00
Ludovic Courtès f1be6f5b5a
gnu: openmpi: Add "static" output. 
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
 2017-07-27 11:47:50 +02:00
Ricardo Wurmus 8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
 2017-07-27 10:04:09 +02:00
Ricardo Wurmus 620b0468e9
gnu: Add cowsay. 
* gnu/packages/games.scm (cowsay): New variable.
 2017-07-27 10:03:37 +02:00
Tobias Geerinckx-Rice 56ab0f0c6d
gnu: nnn: Update to 1.3. 
* gnu/packages/admin.scm (nnn): Update to 1.3.
 2017-07-27 05:03:33 +02:00
Dave Love efcacc17c7
gnu: openmpi: Enable SGE support. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
 #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 217ce5702c
gnu: mg: Add new phase to find 'diff'. 
* gnu/packages/text-editors.scm (mg)[phases]: Add new 'correct-location-of-difftool'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 bcd1544dd2
gnu: mg: Fetch source via HTTPS. 
* gnu/packages/text-editors.scm (mg)[source]: Use HTTPS.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 1a5a8afea0
gnu: mg: Update to 20170401. 
* gnu/packages/text-editors.scm (mg): Update to 20170401.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
Danny Milosavljevic 9ea61b1c6f
gnu: Add python-flask-principal. 
* gnu/packages/python.scm (python-flask-principal, python2-flask-principal):
New variables.
 2017-07-26 21:52:30 +02:00
Tobias Geerinckx-Rice 9d9fc39946
gnu: Add lziprecover. 
* gnu/packages/compression.scm (lziprecover): New variable.
 2017-07-26 19:38:59 +02:00
Leo Famulari f96dbf6b70
gnu: net-tools: Add a test-only variant and use it for GnuTLS. 
* gnu/packages/linux.scm (net-tools-for-tests): Add hidden net-tools variant.
* gnu/packages/tls.scm (gnutls)[native-inputs]: Use net-tools-for-tests instead
of net-tools.
 2017-07-26 12:06:52 -04:00
Ludovic Courtès bcd757fdb4
gnu: mg: Move to (gnu packages text-editors). 
* gnu/packages/mg.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/text-editors.scm (mg): New variable.
 2017-07-26 11:11:11 +02:00
Efraim Flashner 1cae188e61
gnu: glpk: Update to 4.63. 
* gnu/packages/maths.scm (glpk): Update to 4.63.
 2017-07-26 10:15:54 +03:00
Danny Milosavljevic 4f038621a5
gnu: leafpad: Use glib-or-gtk build-system. 
* gnu/packages/text-editors.scm (leafpad): Use glib-or-gtk build-system.
 2017-07-26 08:19:47 +02:00
Danny Milosavljevic ff4192ff57
gnu: claws-mail: Disable (duplicate) Gtk+ icon cache generation. 
* gnu/packages/mail.scm (claws-mail)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
 2017-07-26 08:18:46 +02:00
Kei Kebreau 8ad40a69d1
gnu: evince: Update to 3.24.1. 
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-25 18:41:05 -04:00
Tobias Geerinckx-Rice 980fe414c1
gnu: hplip: Update to 3.17.7. 
* gnu/packages/cups.scm (hplip): Update to 3.17.7.
 2017-07-25 23:59:21 +02:00
Tobias Geerinckx-Rice ae03ee4274
gnu: fdisk: Update to 2.0.0a1. 
* gnu/packages/disk.scm (fdisk): Update to 2.0.0a1.
[arguments]: Make sure the build finds its own headers.
 2017-07-25 23:58:34 +02:00
Tobias Geerinckx-Rice aa588d8a38
gnu: sdparm: Update to 1.10. 
* gnu/packages/disk.scm (sdparm): Update to 1.10.
 2017-07-25 23:58:34 +02:00
Oleg Pykhalov af79852c99
gnu: neofetch: Fix search path. 
* gnu/packages/admin.scm (neofetch): Fix "No such file or directory" for distro logo.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-25 23:07:37 +02:00
Marius Bakke 16fb1e79ca
gnu: chess: Update to 6.2.5. 
* gnu/packages/games.scm (chess): Update to 6.2.5.
 2017-07-25 23:07:37 +02:00
Marius Bakke 4eacb47de0
gnu: feh: Update to 2.19.1. 
* gnu/packages/image-viewers.scm (feh): Update to 2.19.1.
 2017-07-25 22:58:43 +02:00
Marius Bakke 5f02ea1a6d
gnu: notmuch: Update to 0.25. 
* gnu/packages/mail.scm (notmuch): Update to 0.25.
 2017-07-25 22:58:43 +02:00
Kei Kebreau 4fdab17371
gnu: python2-urwid: Actually build urwid for Python 2. 
* gnu/packages/python.scm (python2-urwid)[arguments]: Add #:python.
 2017-07-25 15:29:29 -04:00
Leo Famulari e9f468dfcd
gnu: tcpdump: Update to 4.9.1 [fixes CVE-2017-11108]. 
* gnu/packages/admin.scm (tcpdump): Update to 4.9.1.
 2017-07-25 15:25:44 -04:00
Feng Shu 90062885b7
gnu: you-get: Update to 0.4.803. 
* gnu/packages/video.scm (you-get): Update to 0.4.803.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-25 14:44:19 -04:00
Kei Kebreau c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788. 
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
 2017-07-25 14:11:20 -04:00
Dave Love bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0. 
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 18:10:08 +02:00
Dave Love 1f9bff4152
gnu: openmpi: Update to 1.10.7. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 18:09:27 +02:00
Ludovic Courtès 70bc608503
gnu: Add guile2.0-git. 
* gnu/packages/guile.scm (guile2.0-git): New variable.
 2017-07-25 17:46:17 +02:00
Ludovic Courtès 726ecfeb3a
gnu: Add guile2.0-bytestructures. 
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
 2017-07-25 17:46:17 +02:00
Kei Kebreau 0093b1262b
gnu: maxima: Ensure binutils are available at runtime. 
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
 2017-07-25 07:58:55 -04:00
Kei Kebreau 6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime." 
This reverts commit f2fa86cc82.
Commit 5ea8dbf0c9 fixes the underlying
issue in GNU Common Lisp.
 2017-07-25 07:58:46 -04:00
Kei Kebreau 5ea8dbf0c9
gnu: gcl: Ensure gcc and binutils are available at runtime. 
* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
 2017-07-25 07:58:06 -04:00
Mark H Weaver ebc9f7050c
gnu: webkitgtk: Update to 2.16.6 [security fixes]. 
Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
 2017-07-25 07:32:25 -04:00
Leo Famulari 5b4a6ba044
gnu: xterm: Update to 330. 
* gnu/packages/xorg.scm (xterm): Update to 330.
 2017-07-24 22:54:18 -04:00
Leo Famulari 0e8fed86d8
gnu: dialog: Update to 1.3-20170509. 
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
 2017-07-24 22:54:15 -04:00
Leo Famulari fce8285e4b
gnu: opus: Update to 1.2.1. 
* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
 2017-07-24 17:37:05 -04:00
Christopher Baines d61a894bfa
gnu: gnome: Add deja-dup. 
* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
 2017-07-24 20:05:49 +01:00
Ludovic Courtès c022e11187
gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix): Update to f1ddfe4.
 2017-07-24 12:25:08 +02:00
Ludovic Courtès f1ddfe4f14
gnu: python-flaky: Fix Texinfo markup in description. 
* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
 2017-07-24 12:05:53 +02:00
Leo Famulari 2472f7a8f1
gnu: isc-dhcp: Update bundled bind to 9.9.10-P3. 
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfc.

See 'CHANGELOG' in the source distribution for more information.

* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3.
 2017-07-23 19:05:37 -04:00
Leo Famulari 5391c6c9d2
gnu: bind: Update to 9.11.1-P3. 
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3c.

See 'CHANGELOG' in the source distribution for more information.

* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3.
 2017-07-23 19:05:37 -04:00
Mark H Weaver c67d80563f
gnu: ncurses/gpm: Move to (gnu packages ncurses). 
This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).

* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here.  Fix misleading
indentation.  Add (gnu packages linux) to the module imports.
 2017-07-23 17:04:51 -04:00
Efraim Flashner fd900d68a5
gnu: Add support for aarch64's compiled kernel. 
* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
 2017-07-23 23:33:18 +03:00
Efraim Flashner 826adfdb37
gnu: Add xf86-video-freedreno. 
* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
 2017-07-23 23:33:17 +03:00
Efraim Flashner 4adeb3f6e6
gnu: Add u-boot-odroid-c2. 
* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
 2017-07-23 23:33:16 +03:00
Efraim Flashner 1313628339
gnu: u-boot: Update to 2017.07. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
 2017-07-23 23:33:13 +03:00
Marius Bakke 846cb73865
gnu: tevent: Update to 0.9.33. 
* gnu/packages/samba.scm (tevent): Update to 0.9.33.
 2017-07-23 22:01:29 +02:00
Marius Bakke 85a5800e52
gnu: talloc: Update to 2.1.10. 
* gnu/packages/samba.scm (talloc): Update to 2.1.10.
 2017-07-23 22:01:29 +02:00
Marius Bakke fbed150133
gnu: ldb: Update to 1.1.31. 
* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
 2017-07-23 22:01:28 +02:00
Marius Bakke 17c3f1fb67
gnu: cmocka: Update to 1.1.1. 
* gnu/packages/check.scm (cmocka): Update to 1.1.1.
 2017-07-23 22:01:28 +02:00
Marius Bakke 38bb9df150
gnu: tdb: Update to 1.3.14. 
* gnu/packages/databases.scm (tdb): Update to 1.3.14.
 2017-07-23 22:01:28 +02:00
Marius Bakke 09efef3384
gnu: python-scipy: Update to 0.19.1. 
* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
 2017-07-23 22:01:28 +02:00
Marius Bakke 71d20587a5
gnu: python-matplotlib: Update to 2.0.2. 
* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
 2017-07-23 22:01:28 +02:00
Marius Bakke 9e5ee6b60c
gnu: python-pyparsing: Update to 2.2.0. 
* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
 2017-07-23 22:01:27 +02:00
Marius Bakke 007176e710
gnu: python-pyparsing: Use 'modify-phases' syntax. 
* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
 2017-07-23 22:01:27 +02:00
Oleg Pykhalov 6e864d0081
gnu: Add xmobar. 
gnu/packages/wm.scm (xmobar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-23 15:29:36 -04:00
Efraim Flashner 8f155e3cff
gnu: bash-completion: Update to 2.7. 
* gnu/packages/bash.scm (bash-completion): Update to 2.7.
 2017-07-23 11:05:54 +03:00
ng0 9478c05955
gnu: getmail: Update to 5.1. 
* gnu/packages/mail.scm (getmail): Update to 5.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:34:47 -04:00
Ben Woodcroft f3f68a442c
gnu: metabat: Update to 2.11.1. 
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft 897ab082b2
gnu: python-plastid: Update to 0.4.8. 
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft 0620387a59
gnu: bcftools: Update to 1.5. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag.  Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-23 10:29:36 +10:00