Commit Graph

42584 Commits

Author SHA1 Message Date
Ricardo Wurmus 3b6c77445b
gnu: r-genomicfeatures: Update to 1.34.7.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus a12c527d3c
gnu: r-hdf5r: Update to 1.1.1.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus a7332d1a2f
gnu: r-caret: Update to 6.0-82.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus 733b3c59da
gnu: r-gtable: Update to 0.3.0.
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus fc64504f2d
gnu: grantlee: Delete broken tests.
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
2019-03-27 09:33:50 +01:00
Kei Kebreau 4fee5ec049
gnu: Add adanaxis-mush and adanaxisgpl.
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
2019-03-26 20:59:15 -04:00
Pierre Langlois 4dcf221c85
gnu: qjackctl: Re-enable xunique.
Version 0.5.6 of qjackctl appears to have fixed the xunique
bug that was causing X hanging when using tiling window managers.

See d54a1da43f/ChangeLog (L9)

* gnu/packages/audio.scm (qjackctl)[arguments]: Remove "--disable-xunique"
from configure-flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-27 00:09:38 +01:00
Ricardo Wurmus dd2f0cdba1
gnu: python-django-overextends: Use INVOKE.
* gnu/packages/django.scm (python-django-overextends)[arguments]: Use INVOKE.
2019-03-27 00:04:07 +01:00
Ricardo Wurmus de6be02379
gnu: python-django-contact-form: Use INVOKE.
* gnu/packages/django.scm (python-django-contact-form)[arguments]: Use INVOKE.
2019-03-27 00:03:31 +01:00
Ricardo Wurmus 7cdc7e579b
gnu: fritzing: Update to 0.9.3b.
* gnu/packages/engineering.scm (fritzing): Update to 0.9.3b.
[source]: Fetch from git.
[arguments]: Use INVOKE and adjust configure phase.
[inputs]: Add libgit2; fetch fritzing-parts-db via git.
2019-03-26 23:58:33 +01:00
Ricardo Wurmus 68631e037b
gnu: ldc: Use INVOKE.
* gnu/packages/dlang.scm (ldc)[arguments]: Use INVOKE.
2019-03-26 23:13:54 +01:00
Ricardo Wurmus 4b81d5c4bc
gnu: ldc-bootstrap: Use INVOKE.
* gnu/packages/dlang.scm (ldc-bootstrap)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
2019-03-26 23:13:54 +01:00
Ricardo Wurmus 27cd31e6a5
gnu: open-adventure: Use INVOKE.
* gnu/packages/games.scm (open-adventure)[arguments]: Use INVOKE.
2019-03-26 23:13:54 +01:00
Ricardo Wurmus 7b67bb1fab
gnu: 0ad: Use INVOKE.
* gnu/packages/games.scm (0ad)[arguments]: Use INVOKE.
2019-03-26 23:13:51 +01:00
Pierre Neidhardt c771b799bd
gnu: Add jami-client-gnome.
* gnu/packages/telephony.scm (jami-client-gnome): New variable.
2019-03-26 19:17:01 +01:00
Pierre Neidhardt b630967247
gnu: Add libringclient.
* gnu/packages/telephony.scm (libringclient): New variable.
2019-03-26 19:17:01 +01:00
Pierre Neidhardt 1bfcb19bc3
gnu: Add libring.
* gnu/packages/telephony.scm (libring): New variable.
2019-03-26 19:17:01 +01:00
Pierre Neidhardt 915829e662
gnu: Add pjproject-jami.
* gnu/packages/telephony.scm (pjproject-jami): New variable.
2019-03-26 19:17:01 +01:00
Pierre Neidhardt bd4b6f4164
gnu: Add pjproject.
* gnu/packages/telephony.scm (pjproject): New variable.
2019-03-26 19:17:01 +01:00
Ludovic Courtès 952afb6f8c
environment: Create /etc/group in containers.
Reported by Pierre Neidhardt <mail@ambrevar.xyz>.

* guix/scripts/environment.scm (launch-environment/container): Create
GROUPS and call 'write-group'.
* tests/guix-environment-container.sh: Test it.
2019-03-26 18:11:52 +01:00
Ludovic Courtès 8a9922bdee
environment: Use (gnu build accounts) for /etc/passwd handling.
* guix/scripts/environment.scm (launch-environment/container): Remove
call to 'mock-passwd'; instantiate a <password-entry> instead.  Call
'write-passwd' to write the pasword database instead of using custom
code.
(mock-passwd): Remove.
* tests/guix-environment-container.sh: Test 'getpwuid'.
2019-03-26 18:11:52 +01:00
Ludovic Courtès ec8bc4a34e
build-self: Disable position recording.
'guix pull -n' goes roughly from 40s to 35s.

* build-aux/build-self.scm (build-program): Add call to 'read-disable'.
2019-03-26 18:11:52 +01:00
Ludovic Courtès 863519f660
gnu: current-guix: Delay effectful bits.
* gnu/packages/package-management.scm (current-guix): Delay 'repository-root'.
2019-03-26 18:11:52 +01:00
Ricardo Wurmus 28d32817d8
gnu: python-scanpy: Update to 1.4.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.
[source]: Fetch from git.
[arguments]: Disable broken tests.
[native-inputs]: Add python-pytest.
[home-page]: Use HTTPS.
2019-03-26 18:06:35 +01:00
Ricardo Wurmus 8c9372c124
gnu: python-anndata: Update to 0.6.18.
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.6.18.
2019-03-26 17:13:13 +01:00
Ricardo Wurmus fdc316f374
gnu: trim-galore: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1.
[arguments]: Adjust patching.
2019-03-26 16:40:42 +01:00
Ricardo Wurmus 9ac17c6242
gnu: cutadapt: Update to 2.1.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 2.1.
[source]: Fetch from pypi.
[native-inputs]: Add python-setuptools-scm.
2019-03-26 16:40:42 +01:00
Ricardo Wurmus 24d6498972
gnu: python-xopen: Update to 0.5.0.
* gnu/packages/python-xyz.scm (python-xopen): Update to 0.5.0.
2019-03-26 16:40:42 +01:00
Pierre Neidhardt 6994e67436
etc: Add "rename" snippet.
* etc/snippets/text-mode/guix-commit-message-rename-package: New file.
2019-03-26 14:18:12 +01:00
Pierre Neidhardt f95e33a7ad
gnu: edgar: Rename package to the-legend-of-edgar.
* gnu/packages/games.scm (edgar): Define in terms of
'deprecated-package'.
(the-legend-of-edgar): New variable, formerly known as "edgar".
2019-03-26 13:44:01 +01:00
Pierre Neidhardt b1aee9fce2
gnu: btanks: Rename package to battle-tanks.
* gnu/packages/games.scm (btanks): Define in terms of
'deprecated-package'.
(battle-tanks): New variable, formerly known as "btanks".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt f6a21d61de
gnu: tome4: Rename package to tales-of-maj-eyal.
* gnu/packages/games.scm (tome4): Define in terms of
'deprecated-package'.
(tales-of-maj-eyal): New variable, formerly known as "tome4".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 24a67aef2a
gnu: crawl-tiles: Rename package to dungeon-crawl-stone-soup-tiles.
* gnu/packages/games.scm (crawl-tiles): Define in terms of
'deprecated-package'.
(dungeon-crawl-stone-soup-tiles): New variable, formerly known as "crawl-tiles".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 36a0b5b48c
gnu: crawl: Rename package to dungeon-crawl-stone-soup.
* gnu/packages/games.scm (crawl): Define in terms of
'deprecated-package'.
(dungeon-crawl-stone-soup): New variable, formerly known as "crawl".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 8b6e2bc15f
gnu: fillets-ng: Rename package to fish-fillets-ng.
* gnu/packages/games.scm (fillets-ng): Define in terms of
'deprecated-package'.
(fish-fillets-ng): New variable, formerly known as "fillets-ng".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 6639295f2f
gnu: kiki: Rename package to kiki-the-nano-bot.
* gnu/packages/games.scm (kiki): Define in terms of
'deprecated-package'.
(kiki-the-nano-bot): New variable, formerly known as "kiki".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 184f5c8db1
gnu: starfighter: Rename package to project-starfighter.
* gnu/packages/games.scm (starfighter): Define in terms of
'deprecated-package'.
(project-starfighter): New variable, formerly known as "starfighter".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt ecdb1348ad
gnu: wesnoth-server: Rename package to the-battle-for-wesnoth-server.
* gnu/packages/games.scm (wesnoth-server): Define in terms of
'deprecated-package'.
(the-battle-for-wesnoth-server): New variable, formerly known as "wesnoth-server".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 375cb94130
gnu: wesnoth: Rename package to the-battle-for-wesnoth.
* gnu/packages/games.scm (wesnoth): Define in terms of
'deprecated-package'.
(the-battle-for-wesnoth): New variable, formerly known as "wesnoth".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt c91ed484d0
gnu: abbaye: Rename package to l-abbaye-des-morts.
* gnu/packages/games.scm (abbaye): Define in terms of
'deprecated-package'.
(l-abbaye-des-morts): New variable, formerly known as "abbaye".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt c97e4d8bbe
gnu: gnubg: Rename package to gnubackgammon.
* gnu/packages/games.scm (gnubg): Define in terms of
'deprecated-package'.
(gnubackgammon): New variable, formerly known as "gnubg".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 973bd8a62c
gnu: cataclysm-dda: Rename package to cataclysm-dark-days-ahead.
* gnu/packages/games.scm (cataclysm-dda): Define in terms of
'deprecated-package'.
(cataclysm-dark-days-ahead): New variable, formerly known as "cataclysm-dda".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt df42e0f9c9
gnu: armagetronad: Rename package to armagetron-advanced.
* gnu/packages/games.scm (armagetronad): Define in terms of
'deprecated-package'.
(armagetron-advanced): New variable, formerly known as "armagetronad".
2019-03-26 13:44:00 +01:00
Danny Milosavljevic ceab612374
gnu: docker: Use disjunct temp directories for probing.
* gnu/packages/patches/docker-use-fewer-modprobes.patch: Use disjunct temp
directories for probing.
2019-03-26 12:23:36 +01:00
Danny Milosavljevic 5e00dcc89e
gnu: docker: Add comment.
* gnu/packages/patches/docker-use-fewer-modprobes.patch: Add comment.
2019-03-26 12:23:36 +01:00
Ludovic Courtès e6301fb76d
packages: Adjust to new calling convention for "thunked" fields.
Fixes <https://bugs.gnu.org/34995>.

This is a followup to abd4d6b33d.

* guix/packages.scm (package->bag): Adjust calls to INPUTS,
PROPAGATED-INPUTS, NATIVE-INPUTS, and ARGS, passing them SELF as an
argument.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Use (package-inputs
this-record) intead of (inputs).
* gnu/packages/version-control.scm (git)[arguments]: Likewise.
2019-03-26 10:26:02 +01:00
nee 6c177f6140
gnu: gzdoom: Update to 3.7.2.
* gnu/packages/games.scm (gzdoom): Update to 3.7.2.
[source](uri): Update path.
[source](snippet): Bundled libjpeg directory has been renamed.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2019-03-25 21:26:43 -04:00
Ludovic Courtès 69cae3d335
system: Add 'essential-services' field to <operating-system>.
* gnu/system.scm (<operating-system>)[essential-services]: New field.
(operating-system-directory-base-entries): Remove #:container? keyword
and keep only the not-container branch.
(essential-services): Likewise.
(operating-system-services): Likewise, and call
'operating-system-essential-services' instead of 'essential-services'.
(operating-system-activation-script): Remove #:container?.
(operating-system-boot-script): Likewise.
(operating-system-derivation): Likewise.
* gnu/system/linux-container.scm (container-essential-services): New procedure.
(containerized-operating-system): Use it and set the
'essential-services' field.
(container-script): Remove call to 'operating-system-derivation'.
* gnu/system/vm.scm (system-docker-image): Likewise.
* doc/guix.texi (operating-system Reference): Document 'essential-services'.
2019-03-25 23:37:06 +01:00
Ludovic Courtès cf848cc0a1
accounts: Add default value for the 'home-directory' field of <user-account>.
* gnu/system/accounts.scm (<user-account>)[home-directory]: Mark as
thunked and add a default value.
(default-home-directory): New procedure.
* doc/guix.texi (User Accounts): Remove 'home-directory' from example.
* gnu/system/examples/bare-bones.tmpl: Likewise.
* gnu/system/examples/beaglebone-black.tmpl: Likewise.
* gnu/system/examples/desktop.tmpl: Likewise.
* gnu/system/examples/docker-image.tmpl: Likewise.
* gnu/system/examples/lightweight-desktop.tmpl: Likewise.
* gnu/system/install.scm (installation-os): Likewise.
* gnu/tests.scm (%simple-os): Likewise.
* gnu/tests/install.scm (%minimal-os, %minimal-os-on-vda):
(%separate-home-os, %encrypted-root-os, %btrfs-root-os): Likewise.
* tests/accounts.scm ("allocate-passwd")
("allocate-passwd with previous state"): Likewise.
2019-03-25 23:37:06 +01:00
Ludovic Courtès abd4d6b33d
records: Allow thunked fields to refer to 'this-record'.
* guix/records.scm (this-record): New syntax parameter.
(make-syntactic-constructor)[wrap-field-value]: When F is thunked,
return a one-argument lambda instead of a thunk, and parameterize
THIS-RECORD.
(define-record-type*)[thunked-field-accessor-definition]: Pass X
to (real-get X).
* tests/records.scm ("define-record-type* & thunked & this-record")
("define-record-type* & thunked & default & this-record")
("define-record-type* & thunked & inherit & this-record"): New tests.
2019-03-25 23:37:06 +01:00