Commit Graph

19492 Commits

Author SHA1 Message Date
Ben Woodcroft 206af46fe1
gnu: vsearch: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0.
[source]: Convert most operations in the snippet to patch form and adjust
for 2.4.0.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-02-09 21:21:29 +10:00
Carlos Sánchez de La Lama c8916c3336
gnu: bash-minimal: Assume getcwd works correctly when cross-compiling
* gnu/packages/bash.scm (bash-minimal): Assume getcwd works correctly
when cross compiling.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-02-09 13:05:17 +02:00
Efraim Flashner 98c8b963f4
gnu: mpv: Disable build date.
* gnu/packages/video.scm (mpv)[arguments]: Add '--disable-build-date' to
the configure-flags.
2017-02-09 12:15:05 +02:00
Efraim Flashner f4b7cb88a4
gnu: ffmpeg: Update to 3.2.3.
* gnu/packages/video.scm (ffmpeg): Update to 3.2.3.
2017-02-09 11:22:14 +02:00
Efraim Flashner 3548b83de1
gnu: isc-dhcp: Update bundled bind to 9.9.9-P6.
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.9-P6.
2017-02-09 10:53:52 +02:00
Marius Bakke ba8b9f8de0
gnu: databases.scm: Use license: prefix.
* gnu/packages/databases.scm (4store, gdbm, bdb, bdb-5.3, mysql, mariadb,
  postgresql, qdbm, rocksdb, sparql-query, sqlite, perl-dbi, redis,
  unixodbc, kyotocabinet, wiredtiger): Use license: prefix.
2017-02-09 00:43:44 +01:00
Marius Bakke 06a035db42
gnu: databases.scm: Sort package imports.
* gnu/packages/databases.scm (gnu): Sort module imports.
2017-02-09 00:43:05 +01:00
Marius Bakke 77e52190fa
gnu: rocksdb: Update to 5.1.2.
* gnu/packages/databases.scm (rocksdb): Update to 5.1.2.
[native-inputs]: Add WHICH.
2017-02-09 00:40:35 +01:00
Marius Bakke 507809be15
gnu: weechat: Make sure it finds the correct python.
Fixes <https://bugs.gnu.org/21879>.

* gnu/packages/irc.scm (weechat)[arguments]: Drop 'set-python-file-name' phase
in favor of a 'wrap' phase.
2017-02-09 00:40:14 +01:00
Marius Bakke bafd5bea97
gnu: bind: Update to 9.10.4-P6.
* gnu/packages/dns.scm (bind): Update to 9.10.4-P6.
2017-02-09 00:32:23 +01:00
Thomas Danckaert cce0da5e8d
gnu: Add vinagre.
* gnu/packages/gnome.scm (vinagre): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-02-08 16:17:05 +01:00
Thomas Danckaert 2149d3e3e5
gnu: Add freerdp.
* gnu/packages/rdesktop.scm (freerdp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-02-08 16:17:05 +01:00
Ludovic Courtès 4eaac4b722
import: pypi: Correctly handle multiple-URL origins.
Fixes <https://bugs.gnu.org/25635>.
Reported by Sergei Trofimovich <slyfox@inbox.ru>.

* guix/import/pypi.scm (guix-package->pypi-name)[url->pypi-name]: New
procedure.
Rewrite body to match lists in addition to strings.
* tests/pypi.scm ("guix-package->pypi-name, several URLs"): New test.
2017-02-08 16:17:05 +01:00
Clément Lassieur 750a423996
services: shepherd: Replace spaces with hyphens in file names.
This fixes a bug whereby names of files defining services would be
invalid if 'provisions' contained more than one element.

* gnu/services/shepherd.scm (shepherd-service-file-name): Update
'match-lambda' accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-02-08 16:17:05 +01:00
Ludovic Courtès 387e175492
services: Add 'special-files-service-type'.
* gnu/build/activation.scm (activate-/bin/sh): Remove.
(activate-special-files): New procedure.
* gnu/services.scm (activation-script): Remove call to
'activate-/bin/sh'.
(special-files-service-type): New variable.
(extra-special-file): New procedure.
* gnu/services/base.scm (%base-services): Add SPECIAL-FILES-SERVICE-TYPE
instance.
* gnu/tests/base.scm (run-basic-test)[special-files]: New variables.
["special files"]: New test.
2017-02-08 16:17:05 +01:00
宋文武 618739b063
gnu: nix: Update to 1.11.6.
* gnu/packages/package-management.scm (nix): Update to 1.11.6.
2017-02-08 20:54:42 +08:00
Ying Huang 06d7d1190e
profiles: gtk-im-modules: Fix for gtk3.
Gtk+3 now have multiple outputs, so the gtk-query-immodules-3.0 should be find
in output "bin" instead of "out".

* guix/profiles.scm (gtk-im-modules): Pass the path of gtk-query-immodules-x.x
as 'query' argument to the 'build' procedure.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-02-08 20:12:20 +08:00
ng0 6bd9ad6942
gnu: python-dateutil-2: Update to 2.5.3.
* gnu/packages/python.scm (python-dateutil-2): Update to 2.5.3.
2017-02-08 08:33:16 +01:00
Leo Famulari f0d0c5bb18
etc: The pre-push hook says which commits failed the signature check.
* etc/git/pre-push: Check each commit's signature individually so that
we can report which commits fail the check.
2017-02-08 03:42:08 +01:00
Ricardo Wurmus 4621acfd82
gnu: r: Build default packages reproducibly.
This is a follow-up to commit de643f0c15.

* gnu/packages/statistics.scm (r)[arguments]: Set the built timestamp for core
packages to the epoch; add phase "build-recommended-packages-reproducibly".
2017-02-07 20:04:49 +01:00
Danny Milosavljevic 98d403bb45
gnu: Add python-pyodbc-c.
* gnu/packages/databases.scm (python-pyodbc-c, python2-pyodbc-c):
  New variables.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-07 13:34:38 -05:00
Tobias Geerinckx-Rice 22a7abf7e5
gnu: youtube-dl: Update to 2017.02.07.
* gnu/packages/video.scm (youtube-dl): Update to 2017.02.07.
2017-02-07 18:55:46 +01:00
Tobias Geerinckx-Rice 4dcb3db0ee
gnu: fonts: Use install-file where appropriate.
* gnu/packages/fonts.scm (font-wqy-microhei, font-google-roboto)[arguments]:
Substitute the simpler INSTALL-FILE for every COPY-FILE invoked with redundant
arguments.
2017-02-07 18:51:14 +01:00
Tobias Geerinckx-Rice 33a8687a2a
gnu: mcelog: Update to 148.
* gnu/packages/linux.scm (mcelog): Update to 148.
2017-02-07 18:51:13 +01:00
Efraim Flashner 7ca72ec44b
gnu: glibc: Add version 2.24.
* gnu/packages/base.scm (glibc-2.24): New variable.
2017-02-07 19:41:04 +02:00
Efraim Flashner 242c092745
gnu: glibc: Update to 2.25.
* gnu/packages/base.scm (glibc): Update to 2.25
2017-02-07 19:34:41 +02:00
Boskovits, Gábor 189d842257
gnu: Add lshw.
* gnu/packages/linux.scm (lshw): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-02-07 17:56:06 +01:00
Marius Bakke 0cd3e44577
gnu: grep: Update to 2.28.
* gnu/packages/base.scm (grep): Update to 2.28.
2017-02-07 17:01:23 +01:00
Ludovic Courtès d480ed7edb
build: Warn about lack of substitutes for non-standard stores.
* configure.ac: Emit a warning when $storedir is not "/gnu/store".
2017-02-07 14:53:24 +01:00
Ludovic Courtès 328f7cbe43
daemon: Define 'NIX_STORE' before invoking 'guix perform-download'.
Reported by rohit yadav <rohityadav@utexas.edu>
at <https://lists.gnu.org/archive/html/guix-devel/2017-02/msg00191.html>.

This fixes a regression whereby 'guix perform-download' would always see
NIX_STORE as unset and thus use "/gnu/store", leading it to miscompute
the hydra.gnu.org content-addressed URLs when the store file name is not
"/gnu/store".

* nix/libstore/builtins.cc (builtinDownload): Add 'setenv' call for
'NIX_STORE'.
2017-02-07 14:51:17 +01:00
Ludovic Courtès ef753a1a8f
gnu: grub-efi: Really build the EFI variant.
Fixes a regression introduced in
d846834fc2 where '--with-platform=efi'
would no longer be passed.

* gnu/packages/grub.scm (grub-efi)[arguments]: Provide a default value
for #:configure-flags.
2017-02-07 11:15:33 +01:00
Mark H Weaver 6f48d9db10
gnu: epiphany: Update to 3.22.6 [security update].
See <https://bugzilla.gnome.org/show_bug.cgi?id=752738>.

* gnu/packages/gnome.scm (epiphany): Update to 3.22.6.
[arguments]: Add #:configure-flags '("CFLAGS=-std=gnu99").
2017-02-06 22:25:18 -05:00
Ludovic Courtès a062b6ca99
services: bitlbee: Run in a container.
* gnu/services/networking.scm (bitlbee-shepherd-service): Wrap in
'with-imported-modules' and add 'modules' field.  Use
'make-forkexec-constructor/container' and pass #:mappings.
2017-02-07 00:08:11 +01:00
Ludovic Courtès 63302a4e55
Add (gnu build shepherd).
* gnu/build/shepherd.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-02-07 00:08:11 +01:00
Ludovic Courtès c90db25f4c
linux-container: Add 'container-excursion*'.
* gnu/build/linux-container.scm (container-excursion*): New procedure.
* tests/containers.scm ("container-excursion*")
("container-excursion*, same namespaces"): New tests.
2017-02-07 00:08:10 +01:00
Ludovic Courtès b9a5efa596
services: bitlbee: Read the PID file.
* gnu/services/networking.scm (bitlbee-shepherd-service): Pass
  #:pid-file to 'make-forkexec-constructor'.
2017-02-07 00:08:10 +01:00
Ludovic Courtès f2c66fbe1f
bash completion: Complete subcommands for the current word.
* etc/completion/bash/guix (_guix_complete_subcommand): Refer to
the $COMP_CWORD element instead of the last element.
2017-02-07 00:08:10 +01:00
Ludovic Courtès a93c1c5921
bash completion: Properly complete 'guix container exec'.
* etc/completion/bash/guix (_guix_complete_pid): New function.
(_guix_complete): Add case for "container".
2017-02-07 00:08:10 +01:00
Ludovic Courtès e109ed3922
bash completion: Complete file names after 'guix system COMMAND'.
* etc/completion/bash/guix (_guix_complete): When the command is
"system" and $COMP_CWORD > 2, use _guix_complete_file.
2017-02-07 00:08:10 +01:00
Ludovic Courtès 3454f7edf9
bash completion: Complete 'guix gc' with file names.
Reported by a couple of cool folks at a bar in Brussels.

* etc/completion/bash/guix (_guix_complete): Use '_guix_complete_file'
for 'guix gc'.  This fixes completion of 'guix gc -d'.
2017-02-07 00:08:10 +01:00
Ludovic Courtès 7597478e2e
file-systems: Add '%network-configuration-files' and '%network-file-mappings'.
* gnu/system/file-systems.scm (%network-configuration-files)
(%network-file-mappings): New variables.
* guix/scripts/environment.scm (%network-configuration-files): Remove.
(launch-environment/container): Refer to '%network-file-mappings'
instead of calling 'filter-map'.
2017-02-07 00:08:10 +01:00
Marius Bakke a24fda8114
gnu: bdb: Correct license.
* gnu/packages/databases.scm (bdb)[license]: Replace with up-to-date
information. Move previous contents to ...
(bdb-5.3)[license]: ... here.
2017-02-06 17:33:58 +01:00
Marius Bakke 5f0f368630
gnu: dosfstools: Update to 4.1.
* gnu/packages/disk.scm (dosfstools): Update to 4.1.
[arguments]: Enable tests.
[native-inputs]: Add VIM.
2017-02-06 14:22:16 +01:00
Marius Bakke d846834fc2
gnu: grub: Update to 2.02rc1.
* gnu/packages/grub.scm (grub, grub-efi): Update to 2.02rc1.
[arguments]: Don't disable grub_func_test. Remove #:configure-flags.
2017-02-06 14:22:16 +01:00
Leo Famulari 686d425904
gnu: certbot, python-acme: Update to 0.11.1.
* gnu/packages/tls.scm (python-acme, python2-acme): Update to 0.11.1.
(certbot): Update to 0.11.1.
[version]: Use python-acme's version.
2017-02-06 13:46:45 +01:00
Leo Famulari 6edc15798d
gnu: tcpdump: Fetch source from tcpdump.org.
* gnu/packages/admin.scm (tcpdump)[source]: Remove temporary alternate URL.
2017-02-06 13:08:59 +01:00
Marius Bakke 416c57f071
gnu: ddrescue: Update to 1.22.
* gnu/packages/disk.scm (ddrescue): Update to 1.22.
[home-page]: Use HTTPS.
2017-02-06 12:03:27 +01:00
Sergei Trofimovich cc1c3977d5
gnu: Add re2c.
* gnu/packages/re2c.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add re2c.scm.

CC: ng0 <contact.ng0@cryptolab.net>
Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-02-06 10:51:25 +01:00
Sergei Trofimovich 1ca0f20a7d
config-daemon.ac: detect host AR
The problem is seen when we try to use explicit host:

    ./configure --prefix=/usr --localstatedir=/var/lib --host=x86_64-pc-linux-gnu
    make V=1

Before the change:
    ar cru libstore.a nix/libstore/libstore_a-gc.o
After the change:
    x86_64-pc-linux-gnu-ar cru libstore.a

* config-daemon.ac: use AM_PROG_AR to detect host AR

Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-02-06 10:51:25 +01:00
Ludovic Courtès 36c4917c91
linux-container: Add comment on exception handling.
* gnu/build/linux-container.scm (run-container): Add note about writing
the exceptions.
2017-02-06 10:51:25 +01:00