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38307 Commits

Author SHA1 Message Date
Marius Bakke 366cd7fcba
gnu: python2-futures: Update to 3.2.0. 
* gnu/packages/python.scm (python2-futures): Update to 3.2.0.
 2018-11-24 18:43:07 +01:00
Marius Bakke 799d4bac62
gnu: python2-futures: Disable tests. 
* gnu/packages/python.scm (python2-futures)[arguments]: Set #:test? #f.
 2018-11-24 18:43:06 +01:00
Pierre Neidhardt 4bddcae94b
gnu: sbcl: Update to 1.4.13. 
* gnu/packages/lisp.scm (sbcl): Update to 1.4.13.
[native-inputs]: Use minimal texlive-union instead of full texlive.
[native-inputs]: Use CCL instead of buggy CLISP.
[arguments]: Replace all (zero? (system* ...)) by invoke.
 2018-11-24 18:36:14 +01:00
Pierre Neidhardt 27ebd5c4f9
gnu: gcl: Remove unnecessary texlive input. 
* gnu/packages/lisp.scm (gcl)[native-inputs]: Remove texlive.
 2018-11-24 18:36:13 +01:00
Jelle Licht 3fe6fcc45f
build-system: clojure-build-system: Fix %default-clojure location. 
* guix/build-system/clojure.scm (%default-clojure): Use new package path.
 2018-11-24 16:25:55 +01:00
Marius Bakke 60667159d3
gnu: python-pycurl: Fix FTBFS from 7b84410046. 
* gnu/packages/python-web.scm (python-pycurl)[arguments]: Add phase
'configure-tls-backend'.
 2018-11-24 15:57:56 +01:00
Marius Bakke 68f2e55206
gnu: ledger: Fix build with Boost >= 1.68. 
* gnu/packages/finance.scm (ledger)[arguments]: Add phase 'boost-compat.
 2018-11-24 15:57:56 +01:00
Marius Bakke f028823c0f
gnu: mosaik: Fix FTBFS from b90289dadc. 
* gnu/packages/bioinformatics.scm (mosaik)[inputs]: Add ZLIB:STATIC.
 2018-11-24 15:57:56 +01:00
Marius Bakke 15b5f9f718
gnu: python-cheetah: Update to 3.1.0. 
* gnu/packages/python.scm (python2-cheetah): Rename to ...
(python-cheetah): ... this.  Update to 3.1.0.
[arguments]: Add custom 'check' phase.
[propagated-inputs]: Change PYTHON2-MARKDOWN to PYTHON-MARKDOWN.
(python2-cheetah): Rewrite in terms of PACKAGE-WITH-PYTHON2.
 2018-11-24 15:57:56 +01:00
Marius Bakke 59a1aa595b
gnu: python2-cheetah: Update home page. 
* gnu/packages/python.scm (python-cheetah)[home-page]: Update to current.
 2018-11-24 15:57:56 +01:00
Pierre Neidhardt 96cfa168e5
gnu: clojure: Move to new clojure.scm. 
* gnu/local.mk (clojure): Include new clojure.scm.
* gnu/packages/clojure.scm: Add clojure, clojure-algo-generic,
  clojure-algo-monads, clojure-core-match, clojure-instaparse,
  clojure-tools-macro.
* gnu/packages/lisp.scm: Remove clojure, clojure-algo-generic,
  clojure-algo-monads, clojure-core-match, clojure-instaparse,
  clojure-tools-macro.
 2018-11-24 15:20:51 +01:00
Pierre Neidhardt e83c7d1aba
gnu: femtolisp: Move to scheme.scm. 
* gnu/packages/lisp.scm (femtolisp): Remove.
* gnu/packages/scheme.scm (femtolisp): Add.
 2018-11-24 15:11:37 +01:00
Leo Famulari 083ce0ad5e
gnu: Add APFS-FUSE. 
* gnu/packages/file-systems.scm (apfs-fuse): New variable.
 2018-11-23 21:54:52 -05:00
Mark H Weaver 318507a6f6
gnu: linux-libre: Update to 4.19.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.4.
(%linux-libre-hash): Update hash.
 2018-11-23 21:05:18 -05:00
Mark H Weaver 245139cd0d
gnu: linux-libre@4.14: Update to 4.14.83. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.83.
(%linux-libre-4.14-hash): Update hash.
 2018-11-23 21:03:29 -05:00
Mark H Weaver 268ba4cbcf
gnu: linux-libre@4.9: Update to 4.9.140. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.140.
 2018-11-23 21:02:53 -05:00
Mark H Weaver f3d1a0463a
gnu: linux-libre@4.4: Update to 4.4.164. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.164.
 2018-11-23 21:01:49 -05:00
Marius Bakke 5d46c8b47a
gnu: freedesktop.scm: Sort imports and remove duplicates. 
* gnu/packages/freedesktop.scm: Sort imports alphabetically.
 2018-11-24 02:17:46 +01:00
Marius Bakke 01cef16f85
gnu: rust: Don't depend on 'git'. 
* gnu/packages/rust.scm (rust-1.19)[inputs]: Remove GIT.
(rust-1.20)[arguments]: Disable Cargo tests that require git.
(rust-1.26)[arguments]: Likewise.
 2018-11-24 02:03:12 +01:00
Marius Bakke 52b24ba495
gnu: mariadb: Update to 10.1.37 [security fixes]. 
This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156,
and CVE-2018-3251.  See
<https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details.

* gnu/packages/databases.scm (mariadb): Update to 10.1.37.
 2018-11-24 02:03:12 +01:00
Marius Bakke 4d8f4a3f00
Merge branch 'master' into core-updates 2018-11-24 01:58:18 +01:00
Marius Bakke dc4851093c
gnu: libraw: Update to 0.19.1. 
* gnu/packages/photo.scm (libraw): Update to 0.19.1.
 2018-11-24 01:50:43 +01:00
Marius Bakke 43bcf392a7
gnu: libtorrent-rasterbar: Update to 1.1.11. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.11.
 2018-11-24 01:50:43 +01:00
Nam Nguyen c2be790fb1
gnu: Add deluge. 
* gnu/packages/bittorrent.scm (deluge): New variable.

Co-authored-by: Mike Rosset <mike.rosset@gmail.com>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-24 01:50:43 +01:00
Nam Nguyen 39da44c2c0
gnu: libtorrent-rasterbar: Compile Python bindings in C++11 mode. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Add phase to
  substitute setup.py.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-24 01:50:43 +01:00
Nam Nguyen 8afe166dd7
gnu: Add python-service-identity. 
* gnu/packages/python-crypto.scm (python-service-identity,
  python2-service-identity): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-24 01:50:42 +01:00
Nicolas Goaziou f12f70b1f2
gnu: Add emacs-matrix-client. 
* gnu/packages/emacs.scm (emacs-matrix-client): New variable.
 2018-11-23 21:43:15 +01:00
Nicolas Goaziou d4f7b7e127
gnu: Add emacs-a. 
* gnu/packages/emacs.scm (emacs-a): New variable.
 2018-11-23 21:43:15 +01:00
Nicolas Goaziou 8fc78612b5
gnu: Add emacs-tracking. 
* gnu/packages/emacs.scm (emacs-tracking): New variable.
 2018-11-23 21:43:14 +01:00
Nicolas Goaziou 87470116e6
gnu: Add emacs-ov. 
* gnu/packages/emacs.scm (emacs-ov): New variable.
 2018-11-23 21:43:14 +01:00
Paul Garlick 57d30004e5
gnu: python-slepc4py: Update to 3.10.0. 
* gnu/packages/maths.scm (python-slepc4py): Update to 3.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:27:15 +01:00
Paul Garlick cd3681a237
gnu: python-petsc4py: Update to 3.10.0. 
* gnu/packages/maths.scm (python-petsc4py): Update to 3.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:27:15 +01:00
Paul Garlick e93da160ca
gnu: slepc: Update to 3.10.1. 
* gnu/packages/maths.scm (slepc): Update to 3.10.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:27:15 +01:00
Paul Garlick e6951e4ee0
gnu: petsc: Update to 3.10.2 
* gnu/packages/maths.scm (petsc): Update to 3.10.2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:27:15 +01:00
Luther Thompson dc240b6aa5
gnu: python-ilinkedlist: Update to 0.4.0. 
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.4.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-11-23 20:17:23 +01:00
Ludovic Courtès c491f7f8de
gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase. 
* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of
'system*'.  Add 'mpi-setup' phase.
(pt-scotch32)[arguments]: Likewise.
 2018-11-23 18:44:47 +01:00
Ricardo Wurmus d57ec906ba
gnu: pigx-scrnaseq: Use latest snakemake. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4
with snakemake.
 2018-11-23 16:30:48 +01:00
Ricardo Wurmus 92d9a1e2c6
gnu: pigx-bsseq: Use latest snakemake. 
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4
with snakemake.
 2018-11-23 16:30:16 +01:00
Ricardo Wurmus c068d00746
gnu: pigx-chipseq: Use latest snakemake. 
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4
with snakemake.
 2018-11-23 16:29:35 +01:00
Ricardo Wurmus 936ea3d664
gnu: python-gevent: Update to 1.3.7. 
* gnu/packages/python.scm (python-gevent): Update to 1.3.7.
[arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources".
[propagated-inputs]: Add python-objgraph.
 2018-11-23 16:01:21 +01:00
Ricardo Wurmus 72ffb51231
gnu: Add python-objgraph. 
* gnu/packages/python.scm (python-objgraph): New variable.
 2018-11-23 16:01:07 +01:00
Ricardo Wurmus 93d229cb86
gnu: python-loompy: Remove python-typing. 
* gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove
python-typing.
 2018-11-23 15:59:44 +01:00
Ludovic Courtès e9926f80c6
build: Binary tarball now populates the "current-guix" profile. 
* Makefile.am (guix-binary.%.tar.xz): Pass
'--profile-name=current-guix'.  Remove glibc and glibc-utf8-locales.
* doc/guix.texi (Binary Installation): Update accordingly.
* etc/guix-install.sh
* etc/guix-install.sh (sys_create_store, sys_enable_guix_daemon)
(sys_authorize_build_farms): Likewise.
* etc/guix-publish.conf.in, etc/guix-publish.service.in,
etc/guix-daemon.conf.in, etc/guix-daemon.service.in: Update file names
accordingly.
 2018-11-23 15:42:01 +01:00
Ludovic Courtès 08f410834b
pack: Add '--profile-name'. 
* guix/scripts/pack.scm (self-contained-tarball): Add #:profile-name and
honor it.
(squashfs-image, docker-image): Add #:profile-name.
(%default-options): Add 'profile-name'.
(%options, show-help): Add "--profile-name".
(guix-pack): Honor it.
* tests/guix-pack-localstatedir.sh: New file.
* Makefile.am (SH_TESTS): Add it.
* doc/guix.texi (Invoking guix pack): Document "--profile-name".
 2018-11-23 15:42:01 +01:00
Ludovic Courtès 4bd5b9707e
Update NEWS. 2018-11-23 15:42:01 +01:00
Ludovic Courtès 694e638e78
status: Display 'build-remote' events. 
* guix/status.scm (print-build-event): Add clause for 'build-remote'.
 2018-11-23 15:42:00 +01:00
Ludovic Courtès 60e1c1099f
Update Guile-SQLite3 URL everywhere. 
* README: Update Guile-SQLite3 URL.
* doc/guix.texi (Requirements): Likewise.
* guix/store/database.scm (sqlite-exec): Likewise.
* m4/guix.m4 (GUIX_CHECK_GUILE_SQLITE3): Likewise.
 2018-11-23 15:42:00 +01:00
Alex Vong 332443d429
gnu: emacs-picpocket: Update to 40. 
Fix version string as well:
<https://lists.gnu.org/archive/html/guix-devel/2018-11/msg00286.html>.

* gnu/packages/emacs.scm (emacs-picpocket): Update to 40.
 2018-11-23 22:37:12 +08:00
Rutger Helling a605e3c68c
gnu: xpra: Update to 2.4.2. 
* gnu/packages/xorg.scm (xpra): Update to 2.4.2.
 2018-11-23 13:59:36 +01:00
Vagrant Cascadian 74e35e8c94
gnu: Add u-boot-pinebook. 
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch: New file.
* gnu/packages/patches/u-boot-pinebook-syscon-node.patch: New file.
* gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch: New file.
* gnu/packages/patches/u-boot-pinebook-video-bridge.patch: New file.
* gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch: New file.
* gnu/packages/patches/u-boot-pinebook-dts.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/bootloaders.scm (u-boot-pinebook): New exported variable.
* gnu/bootloader/u-boot.scm (u-boot-pinebook-bootloader): New exported
variable.
* gnu/system/install.scm (pinebook-installation-os): New exported variable.
 2018-11-22 21:59:05 +01:00