Commit Graph

4081 Commits

Author SHA1 Message Date
Maxim Cournoyer f42e4ebb56
build: go-build-system: Ensure uniform unpacking directory.
Depending on whether the source is a directory or an archive, we strip the
source directory or preserve it, respectively.  This change makes it so that
whether the type of the source, it is unpacked at the expected location given
by the IMPORT-PATH of the Go build system.

* guix/build/go-build-system.scm: Add the (ice-9 ftw) module.
(unpack): Add inner procedure to maybe strip the top level directory of an
archive, document it and use it.
2019-05-05 20:06:19 -04:00
Maxim Cournoyer 7e84d3eef7
build: go-build-system: Use WHEN for side-effect conditionals.
* guix/build/go-build-system.scm (unpack): Replace single branch `if' by
`when'.
2019-05-05 20:06:18 -04:00
Maxim Cournoyer b5f0528354
build: go-build-system: Re-ident.
* guix/build/go-build-system.scm (unpack): Fix indentation.
2019-05-05 20:06:18 -04:00
Ricardo Wurmus 6490cd31cc
guix: Update to Bioconductor 3.9.
* guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.9.
2019-05-06 00:14:27 +02:00
Ludovic Courtès 746ac457cc
Merge branch 'version-1.0.0' 2019-05-02 15:32:30 +02:00
Ludovic Courtès 757e633d57
build: Change default substitute server to "ci.guix.gnu.org".
* config-daemon.ac: Replace "ci.guix.info" with "ci.guix.gnu.org".
* doc/guix.texi (SUBSTITUTE-SERVER): Likewise.
* etc/substitutes/ci.guix.gnu.org.pub: New file.
* Makefile.am (dist_pkgdata_DATA): Add it.
* guix/scripts/build.scm (%default-log-urls): Update.
* guix/scripts/substitute.scm (%default-substitute-urls): Likewise.
* guix/store.scm (%default-substitute-urls): Likewise.
* guix/self.scm (miscellaneous-files): Add "ci.guix.gnu.org".
2019-05-01 11:05:47 +02:00
Tobias Geerinckx-Rice e13bd3088d
guix: Fix another typo in another docstring.
* guix/build/clojure-utils.scm (include-list\exclude-list)<docstring>:
Fix typo.
2019-04-30 14:13:50 +02:00
Tobias Geerinckx-Rice 88401314f9
guix: Fix typo in docstring.
* guix/build/syscalls.scm (device-in-use?)<docstring>: Fix typo.
2019-04-30 13:56:35 +02:00
Ludovic Courtès c20d4cac1f
processes: Gracefully handle daemons without clients.
Fixes <https://bugs.gnu.org/34716>.
Reported by Mark H Weaver <mhw@netris.org>.

The problem could be reproduced by running, on one hand:

  sh -c 'exec -a guix-daemon sleep 777'

and on the other hand:

  guix processes

If there is no process with PID 777, 'guix processes' would barf as it
stumbles upon a <daemon-session> record whose client is #f.

* guix/scripts/processes.scm (daemon-sessions)[child-process->session]:
New procedure, with lambda formerly passed to 'map'.  Handle #f returns
from 'lookup-process'.
Call 'child-process->session' within 'filter-map', not just 'map'.
2019-04-29 21:54:10 +02:00
Ludovic Courtès c21d912a02
processes: 'process-open-files' ignores disappeared /proc/PID/fd entries.
Previously, 'process-open-files' would throw ENOENT if an entry had
vanished after the 'scandir' call and before the 'readlink' call.

* guix/scripts/processes.scm (process-open-files): Catch ENOENT errors
from 'readlink'.
2019-04-29 21:39:38 +02:00
Ludovic Courtès da56f10971
guix package: Add 'guix search' alias.
* guix/scripts/search.scm: New file.
* Makefile.am (MODULES): Add it.
* po/guix/POTFILES.in: Add it.
* tests/guix-package-aliases.sh: Add test.
* doc/guix.texi (Invoking guix package): Document it and use it in a
couple of examples.
2019-04-29 12:19:24 +02:00
rendaw 9d3053819d
file-systems: Support the 'no-atime' flag.
* guix/build/syscalls.scm (MS_NOATIME): New variable.
* gnu/build/file-systems.scm (mount-flags->bit-mask): Support it.
* doc/guix.texi (File Systems): Document it and add cross-references to
the relevant documentation.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-04-29 12:19:03 +02:00
Ludovic Courtès d824cfbabe
guix package: Add 'install', 'remove', and 'upgrade' aliases.
* guix/scripts/install.scm, guix/scripts/remove.scm,
guix/scripts/upgrade.scm, tests/guix-package-aliases.sh: New files.
* Makefile.am (MODULES, SH_TESTS): Add them.
* po/guix/POTFILES.in: Add them.
* guix/scripts/package.scm (guix-package): Split with...
(guix-package*): ... this.  New procedure.
* doc/guix.texi (Invoking guix package): Document them.
(Binary Installation, Application Setup, Package Management)
(Packages with Multiple Outputs, Package Modules)
(X.509 Certificates, Installing Debugging Files): Use 'guix install' in
simple examples.
* etc/completion/bash/guix (_guix_complete): Handle "install", "remove",
and "upgrade".
2019-04-29 10:13:44 +02:00
Ludovic Courtès 0663302618
describe: Provide a hint when origin detection fails.
* guix/scripts/describe.scm (display-checkout-info): Add call to
'display-hint' in the error case.
2019-04-28 22:57:06 +02:00
Ludovic Courtès 7d62fa206b
Merge branch 'staging' 2019-04-28 14:45:35 +02:00
Julien Lepiller 554b30d2ac
self: Rebuild translated manuals.
* guix/self.scm (info-manual): Run po4a and related commands to generate
translated texi files before building translated manuals.
* guix/build/po.scm: New file.
* Makefile.am (MODULES_NOT_COMPILED): Add it.
2019-04-27 17:13:18 +02:00
Julien Lepiller c3634df2a4
gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependent
packages.

This fixes <https://bugs.gnu.org/27462>.

* gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit)
(ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith)
(ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext)
(ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result)
(ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv)
(ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring)
(ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl)
(ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath)
(ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar)
(ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64)
(ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib)
(ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver)
(ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv)
(ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare)
(ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib)
(ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv)
(ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate)
(ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value)
(ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail)
(ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message)
(ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re)
(ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel)
(ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core)
(ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async)
(ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables.
* guix/build-system/ocaml.scm (default-ocaml4.02)
(default-ocaml4.02-findlib, package-with-ocaml4.02)
(strip-ocaml4.02-variant): Remove variables.
2019-04-25 19:01:31 +02:00
Tobias Geerinckx-Rice 52beae7b8a
gnu, guix: Yearly ritual purging of the filesystems.
* gnu/packages/android.scm (android-ext4-utils)[synopsis]: Fix ‘file
system’ spelling.
* gnu/packages/disk.scm (rmlint)[synopsis, description]: Likewise.
* gnu/packages/golang.scm (go-github-com-kr-fs)[synopsis, description]:
Likewise & edit for grammar.
* gnu/packages/ipfs.scm (gx, go-ipfs)[description]: Likewise.
* /gnu/packages/java.scm (java-commons-vfs)[synopsis]: Likewise.
* gnu/packages/linux.scm (fuseiso)[description]: Likewise.
(genext2fs)[synopsis, description]: Likewise.
* gnu/packages/package-management.scm (libostree)[description]: Likewise.
* gnu/packages/python-xyz.scm (python-requests-file)[description]:
Likewise & mark up.
* gnu/packages/rails.scm (ruby-with-advisory-lock)[description]:
Likewise.
* gnu/packages/ruby.scm (ruby-rerun)[description]: Likewise.
* guix/build/go-build-system.scm (setup-go-environment)<docstring>:
Likewise.
* guix/store/deduplication.scm (get-temp-link)<docstring>: Likewise.
2019-04-25 04:42:16 +02:00
Ludovic Courtès 17503ea8a2
self: Install 'guix.zh_CN.info'.
Reported by Julien Lepiller.

* guix/self.scm (info-manual): Adjust file name regexp so that it
matches *.zh_CN.texi.
2019-04-25 00:45:34 +02:00
Ludovic Courtès af41e504cf
guix system: Compute 'bootcfg' only for 'init' and 'reconfigure'.
Previously, 'guix system vm' would start by computing the bootcfg
derivation, which itself depended on an incorrect OS derivation (for the
original OS instead of the one passed through
'virtualized-operating-system'.)  That added overhead and would force
the user's config file to define a root file system, for example, even
though it makes no sense in the case of a VM.

* guix/scripts/system.scm (perform-action)[bootcfg]: Limit to the 'init'
and 'reconfigure' actions.
2019-04-23 23:44:35 +02:00
Marius Bakke 37da4fbe15
Merge branch 'master' into staging 2019-04-23 19:43:59 +02:00
Ludovic Courtès a06a95baff
pull: Create profile after the store connection has been opened.
Fixes <https://bugs.gnu.org/35341>.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.

Previously, we'd call 'ensure-default-profile' before the connection to
the daemon has been opened.  On the first connection, the daemon ensures
that /var/guix/profiles/per-user is world-writable.  Since we were
calling 'ensure-default-profile' before that,
/var/guix/profiles/per-user was typically non-writable (555 and
root-owned), and thus 'guix pull' would error out.

* guix/scripts/pull.scm (guix-pull): Call 'ensure-default-profile'
within 'with-store'.
2019-04-22 12:01:32 +02:00
Ludovic Courtès c5265a0951
pull: Add '--news'.
Suggested by Tobias Geerinckx-Rice <me@tobias.gr>.

* guix/scripts/pull.scm (%options, show-help): Add '--news'.
(display-profile-news): Add #:current-is-newer? and #:concise?.
Honor them.
(build-and-install): Pass #:concise? #t.
(display-new/upgraded-packages)[concise/max-item-count]: New variable.
Add call to 'display-hint'.
(process-query): Add clause for 'display-news'.
* doc/guix.texi (Invoking guix pull): Add '--news'.
2019-04-22 12:01:32 +02:00
Ludovic Courtès ea261dea0c
guix build: Accept multiple '-s' options.
* guix/scripts/build.scm (%default-options): Remove 'system'.
(%options) <--system>: Keep previous occurrences of 'system in RESULT.
(options->derivations)[system]: Remove.
[systems, things-to-build]: New variables.
[compute-derivation]: New procedure.
Iterate on all of SYSTEMS to compute the derivations of THINGS-TO-BUILD.
* tests/guix-build.sh: Add test for one and multiple '-s' flags.
* doc/guix.texi (Additional Build Options): Document this behavior.
2019-04-19 17:46:40 +02:00
Christopher Baines 3fdb9a375f
guile-build-system: Support building in parallel.
* guix/build/guile-build-system.scm (build): Use invoke-each, instead of
for-each, to use multiple cores if available.
(invoke-each, report-build-process): New procedures.
2019-04-18 23:13:48 +01:00
Ludovic Courtès 702c3c7dab
lint: 'check-github-url' uses our own 'open-connection-for-uri'.
Fixes <https://bugs.gnu.org/35053>.
Reported by Efraim Flashner <efraim@flashner.co.il>.

Previously 'check-github-url' would let Guile 2.2's (web client) module
take care of opening the connection.  Consequently, it wouldn't use the
TLS priority strings that we use in (guix build download),
'open-connection-for-uri'.  In particular, it would not disable TLSv1.3,
which would trigger <https://bugs.gnu.org/34102> for github.com.

* guix/scripts/lint.scm (check-github-url): Add #:timeout parameter.
[follow-redirect]: Change parameter name to 'url' and pass it to
'string->uri'.  Call 'guix:open-connection-for-uri' to open the
connection and pass it to 'http-head' via #:port.
2019-04-18 17:43:56 +02:00
Ludovic Courtès 72f749dcb8
pull: '--url', '--commit', and '--branch' apply to the 'guix' channel.
Suggested by pkill9 <pkill9@runbox.com>.

* guix/scripts/pull.scm (channel-list): Apply REF and URL to the 'guix'
channel.
* doc/guix.texi (Invoking guix pull): Adjust accordingly.
2019-04-17 13:56:40 +02:00
Ludovic Courtès f2d86ed0b3
build: No longer substitute 'LIBGCRYPT'.
This had become useless since ca71942445.

* configure.ac (LIBGCRYPT): Remove.
* guix/config.scm.in (%libgcrypt): Remove.
2019-04-17 11:53:53 +02:00
Ludovic Courtès ab77b69eca
self: Remove unused variable.
This variable is unused since commit
45779fa676.

* guix/self.scm (%dependency-variables): Remove.
* build-aux/build-self.scm (%dependency-variables): Remove.
2019-04-17 11:53:53 +02:00
Marius Bakke f5961dd585
Merge branch 'master' into staging 2019-04-17 00:08:34 +02:00
Ludovic Courtès d1f7748a2e
store: Add "add-data-to-store-cache" profiling component.
* guix/store.scm (add-data-to-store): Define 'lookup' and use it instead
of 'hash-ref'.
2019-04-16 17:30:21 +02:00
Ludovic Courtès e856177597
derivations: Reduce 'valid-path?' RPCs in 'derivation-prerequisites-to-build'.
On a profile with 280 packages, this reduces the number of
'valid-paths?' RPCs made by 'guix package -nu' from 6K to 500.

* guix/derivations.scm (derivation-prerequisites-to-build)[built?]:
Memoize 'valid-path?' calls.
2019-04-16 17:30:21 +02:00
Ludovic Courtès 3961edf230
store: Memoize 'built-in-builders' call directly in <store-connection>.
The caching strategy introduced in
40cc850aeb was ineffective since we
regularly start from an empty object cache.  For example, "guix build
inkscape -n" would make 241 'built-in-builders' RPCs.

* guix/store.scm (<store-connection>)[built-in-builders]: New field.
(open-connection): Adjust '%make-store-connection' call accordingly.
(port->connection): Likewise.
(built-in-builders): Rename to...
(%built-in-builders):  ... this.
(built-in-builders): New procedure.
* guix/download.scm (built-in-builders*): Remove 'mcached' call.
2019-04-16 17:30:21 +02:00
Ludovic Courtès 4aea820f09
guix build: Fix relative file name canonicalization for '--root'.
Fixes <https://bugs.gnu.org/35271>.
Reported by rendaw <7e9wc56emjakcm@s.rendaw.me>.

* guix/scripts/build.scm (register-root): When ROOT is a relative file
name, append the basename of ROOT, not ROOT itself.
* tests/guix-build.sh: Add test.
2019-04-15 16:57:12 +02:00
Ludovic Courtès 3dae43a929
ui: Highlight heading of generation lists.
* guix/ui.scm (display-generation): Highlight the "Generation" heading.
2019-04-14 23:40:52 +02:00
Ludovic Courtès c1c5d68a94
colors: Add 'highlight'.
* guix/colors.scm (%highlight-color): New variable.
(highlight): New procedure.
* guix/ui.scm (%highlight-argument)[highlight]: Remove.
(%highlight-color): Remove.
2019-04-14 23:40:52 +02:00
Danny Milosavljevic 0b30a1a072
build-system/linux-module: Configure module like the kernel.
* guix/build/linux-module-build-system.scm (configure): New procedure.
(%standard-phases): Add "configure" phase.
2019-04-12 00:46:08 +02:00
Danny Milosavljevic 88e13c2587
build-system/linux-module: Support module source versioning.
* guix/build-system/linux-module.scm (make-linux-module-builder)
[native-inputs]: Add linux.
[arguments]<#:phases>[install]: Install "System.map" and "Module.symvers".
* guix/build/linux-module-build-system.scm (configure): Delete procedure.
(%standard-phases): Delete "configure" phase.
2019-04-12 00:13:34 +02:00
Ludovic Courtès 544265acba
colors: Add 'colorize-matches'.
* guix/colors.scm (colorize-matches): New procedure.
(color-rules): Rewrite in terms of 'colorize-matches'.
2019-04-11 18:18:13 +02:00
Ludovic Courtès 2569ef9dab
colors: Introduce a disjoint type and pre-compute ANSI escapes.
* guix/colors.scm (color-table, color): Remove.
(<color>): New record type.
(print-color): New procedure.
(define-color-table, color): New macros.
(color-codes->ansi): New procedure.
(%reset): New variable.
(colorize-string): Rewrite accordingly.
(color-rules): Adjust accordingly.
* guix/status.scm (print-build-event): Adjust to new 'colorize-string'
interface.
* guix/ui.scm (%highlight-argument): Likewise.
(%warning-colors, %info-colors, %error-colors, %hint-colors)
(%highlight-colors): Remove.
(%warning-color, %info-color, %error-color, %hint-color)
(%highlight-color): New variables.
2019-04-11 18:18:13 +02:00
Ludovic Courtès c1df77e215
guix gc: '-d' does not attempt to delete non-user-owned roots.
* guix/scripts/gc.scm (guix-gc)[delete-generations]: Limit to user-owned
roots, unless we're running as root.
2019-04-11 18:18:13 +02:00
Danny Milosavljevic ce6312999f
Add (guix build-system linux-module).
* guix/build/linux-module-build-system.scm: New file.
* guix/build-system/linux-module.scm: New file.
* doc/guix.texi (Build Systems): Document it.
* Makefile.am (MODULES): Add them.
2019-04-11 17:50:18 +02:00
Julien Lepiller 7b1c7ecdfb
import: opam: Use dune-build-system when possible.
* guix/import/opam.scm (opam->guix-package): Detect when dune can be used.
2019-04-10 21:39:04 +02:00
Julien Lepiller 3e159dd0a4
import: opam: Add more patterns to opam file parser.
* guix/import/opam.scm: Add more patterns to peg parser.
(choice-pat choice condition-not condition-paren): New patterns.
(ground-value condition-content condition-var): Update patterns.
2019-04-10 21:38:45 +02:00
Ludovic Courtès 9c074f61ef
scripts: GC hint suggests 'guix gc -d 1m'.
* guix/scripts.scm (warn-about-disk-space): Suggest 'guix gc -d'.
2019-04-10 17:09:47 +02:00
Ludovic Courtès 96b8c2e6e2
guix gc: Add '--delete-generations'.
* guix/scripts/gc.scm (show-help, %options): Add
'--delete-generations'.  Change '--delete' shorthand to '-D'.
(delete-old-generations): New procedure.
(guix-gc)[delete-generations]: New procedure.
Call it when ACTION is 'collect-garbage' and OPTS contains
'delete-generations.
* doc/guix.texi (Invoking guix gc): Document it.
2019-04-10 17:09:47 +02:00
Ludovic Courtès c872b952c5
profiles: Add 'generation-profile'.
* guix/profiles.scm (%profile-generation-rx): New variable.
(generation-profile): New procedure.
2019-04-10 17:09:47 +02:00
Ludovic Courtès bacf980c76
guix gc: Add '--list-roots'.
* guix/scripts/gc.scm (show-help, %options): Add '--list-roots'.
(guix-gc)[list-roots]: New procedure.
Handle '--list-roots'.
* tests/guix-gc.sh: Test it.
* doc/guix.texi (Invoking guix gc): Document it.
2019-04-10 17:09:47 +02:00
Ludovic Courtès 72eda0624b
Add (guix store roots).
* guix/store/roots.scm, tests/store-roots.scm: New files.
* Makefile.am (STORE_MODULES): Add guix/store/roots.scm.
(SCM_TESTS): Add tests/store-roots.scm.
2019-04-10 17:09:47 +02:00
Ludovic Courtès 08d0f950b3
pull: Remove duplicate '--dry-run' description.
Reported by pkill9.

* guix/scripts/pull.scm (show-help): Remove duplicate '--dry-run'
description.
2019-04-10 17:09:47 +02:00