0c792ffbd1
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
2019-03-06 21:30:30 +01:00
b7d93cf508
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
2019-03-06 21:29:20 +01:00
c3adc83054
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
2019-03-06 21:26:54 +01:00
5acb9052cf
gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
2019-03-06 21:25:18 +01:00
fe0b76e215
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
2019-03-06 21:23:42 +01:00
40a6505711
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
...to here.
2019-03-06 21:23:20 +01:00
66e35ce63b
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move
from here...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
here.
2019-03-06 21:16:33 +01:00
bfb93b4889
gnu: r-geneplotter: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here...
* gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
2019-03-06 21:13:38 +01:00
9f8698ad1c
gnu: Add guile-stis-parser.
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* gnu/packages/guile-xyz.scm (guile-stis-parser): New variable.
2019-03-06 21:07:49 +01:00
3d13b448e5
gnu: r-copynumber: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-copynumber): Move from here...
* gnu/packages/bioconductor.scm (r-copynumber): ...to here.
2019-03-06 21:07:49 +01:00
6aa896d82e
gnu: Update copyright headers.
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This is a follow-up to commit 1fe9a36173
2019-03-06 21:07:49 +01:00
d2b38df62e
gnu: font-gnu-unifont: Update to 12.0.01.
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* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01.
2019-03-06 20:51:47 +02:00
393b55d5c7
gnu: cabextract: Don't use NAME in source URI.
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* gnu/packages/compression.scm (cabextract)[source]: Hard-code NAME.
2019-03-06 16:48:40 +01:00
bde093c23d
gnu: cabextract: Update to 1.9.1.
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* gnu/packages/compression.scm (cabextract): Update to 1.9.1.
2019-03-06 16:48:39 +01:00
8fadbc4bb3
gnu: lcov: Update to 1.14.
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* gnu/packages/code.scm (lcov): Update to 1.14.
2019-03-06 16:48:39 +01:00
7016e62070
gnu: python-mako: Update home page.
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* gnu/packages/python-xyz.scm (python-mako)[home-page]: Use HTTPS.
2019-03-06 16:30:48 +01:00
dff79364cf
gnu: fuseiso: Fix typo.
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* gnu/packages/linux.scm (fuseiso)[synopsis]: s/imsages/images.
2019-03-06 16:30:48 +01:00
a9eeda20b4
gnu: valgrind: Add download mirror.
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* gnu/packages/valgrind.scm (valgrind)[source](uri): Add mirror.
2019-03-06 16:30:48 +01:00
38502a7d13
gnu: bismark: Update to 0.20.1.
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* gnu/packages/bioinformatics.scm (bismark): Update to 0.20.1.
[source]: Remove obsolete snippet.
[arguments]: Add build phase "replace-plotly.js" and add requried modules;
adjust "install" phase.
[inputs]: Add perl-carp and perl-getopt-long.
[native-inputs]: Add plotly.js and uglify-js.
2019-03-06 16:26:23 +01:00
1564e0fefa
gnu: Add fuseiso.
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* gnu/packages/linux.scm (fuseiso): New variable.
2019-03-06 16:24:34 +01:00
cb66fb101f
gnu: Add r-scde.
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* gnu/packages/bioinformatics.scm (r-scde): New variable.
2019-03-06 15:55:54 +01:00
afeb10a056
gnu: Add bowtie1.
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* gnu/packages/bioinformatics.scm (bowtie1): New variable.
2019-03-06 15:32:45 +01:00
5b8f892872
gnu: octave, octave-cli: Update to 5.1.0.
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* gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0.
2019-03-06 09:17:33 -05:00
e366521a94
gnu: crawl, crawl-tiles: Update to 0.23.1.
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* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.23.1.
[native-inputs]: Add python and python-pyyaml.
[arguments]: Add 'patch-python' phase, modify the 'check' phase and move the
'check' phase back after the 'build' phase.
2019-03-06 09:17:24 -05:00
5bb674a0cd
gnu: perl-czplib: Fix installation directory.
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* gnu/packages/perl.scm (perl-czplib)[arguments]: Fix installation directory.
2019-03-06 15:05:38 +01:00
5531782d1c
gnu: Add guile-studio.
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* gnu/packages/guile-xyz.scm (guile-studio): New variable.
2019-03-06 14:40:02 +01:00
4fc9b5b1dd
gnu: Add genrich.
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* gnu/packages/bioinformatics.scm (genrich): New variable.
2019-03-06 13:28:45 +01:00
1fe9a36173
gnu: r-dnacopy: Remove duplicate definition.
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Reported by Christopher Baines <mail@cbaines.net>.
* gnu/packages/bioinformatics.scm (r-dnacopy): Remove variable.
2019-03-06 10:39:28 +01:00
3dad6087be
gnu: Add r-org-dr-eg-db.
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* gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable.
2019-03-06 10:29:25 +01:00
43d6776ba4
gnu: java-eclipse-jdt-core: Update to 3.16.0.
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* gnu/packages/java.scm (java-eclipse-jdt-core): Update to 3.16.0.
2019-03-06 10:10:23 +01:00
c8427a5e91
gnu: java-eclipse-core-resources: Update to 3.13.200.
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* gnu/packages/java.scm (java-eclipse-core-resources): Update to 3.13.200.
2019-03-06 10:10:23 +01:00
4fa9b6e657
gnu: java-eclipse-core-runtime: Update to 3.15.100.
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* gnu/packages/java.scm (java-eclipse-core-runtime): Update to 3.15.100.
2019-03-06 10:10:23 +01:00
e40e3792e6
gnu: java-eclipse-equinox-common: Update to 3.10.200.
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* gnu/packages/java.scm (java-eclipse-equinox-common): Update to 3.10.200.
2019-03-06 10:10:19 +01:00
d9eada7917
gnu: shaderc: Update to 2018.0.
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* gnu/packages/vulkan.scm (shaderc): Update to 2018.0.
2019-03-06 09:26:50 +01:00
264c803b82
gnu: spirv-tools: Update to 2019.1.
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* gnu/packages/vulkan.scm (spirv-tools): Update to 2019.1.
[arguments]: Add 'fixgcc7 phase.
[native-inputs]: Add gcc-7.
2019-03-06 09:26:50 +01:00
9a1de5f0fa
gnu: spirv-headers: Update to commit 8bea0a2.
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* gnu/packages/vulkan.scm (spirv-headers): Update to commit 8bea0a2.
2019-03-06 09:26:49 +01:00
3113ecfaec
gnu: glslang: Update to 7.11.3113.
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* gnu/packages/vulkan.scm (glslang): Update to 7.11.3113.
2019-03-06 09:26:49 +01:00
3546e97f38
gnu: MPD: Update to 0.21.5.
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* gnu/packages/mpd.scm (mpd): Update to 0.21.5.
2019-03-05 21:10:54 -05:00
84eb265eb8
gnu: FFmpeg: Build with AV1 support.
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* gnu/packages/video.scm (ffmpeg)[inputs]: Add libaom.
[arguments]: Pass '--enable-libaom' to #:configure-flags.
(ffmpeg-3.4)[inputs, arguments]: Filter out libaom.
2019-03-05 18:29:20 -05:00
a7afa45401
gnu: Add libaom.
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* gnu/packages/video.scm (libaom): New variable.
Co-authored-by: Leo Famulari <leo@famulari.name>
2019-03-05 18:29:20 -05:00
dbfa3bb5d0
gnu: you-get: Update to 0.4.1256.
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* gnu/packages/video.scm (you-get): Update to 0.4.1256.
2019-03-06 00:15:28 +01:00
fe67e51301
gnu: youtube-dl: Update to 2019.03.01.
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* gnu/packages/video.scm (youtube-dl): Update to 2019.03.01.
2019-03-06 00:15:27 +01:00
84bdd0ec06
gnu: plantuml: Update to 1.2019.2.
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* gnu/packages/uml.scm (plantuml): Update to 1.2019.2.
2019-03-06 00:15:27 +01:00
2830802043
gnu: xinit: Update to 1.4.1.
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* gnu/packages/xorg.scm (xinit): Update to 1.4.1.
2019-03-06 00:15:27 +01:00
2e625ef73a
gnu: lxc: Fix documentation directory.
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* gnu/packages/virtualization.scm (lxc)[arguments]: Set ‘--docdir’ in #:configure-flags.
2019-03-06 00:15:26 +01:00
cc7058b20b
gnu: lxc: Update to 3.1.0.
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* gnu/packages/virtualization.scm (lxc): Update to 3.1.0.
2019-03-06 00:15:26 +01:00
5f7c036cf6
gnu: dav1d: Update to 0.2.0.
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* gnu/packages/video.scm (dav1d): Update to 0.2.0.
[source]: Add alternate URL.
2019-03-05 17:56:49 -05:00
5387971a9e
artwork: Update snapshot to b975164.
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* gnu/artwork.scm (%artwork-repository): Update to b975164.
2019-03-05 23:08:53 +01:00
af85757915
gnu: singularity: Leave PATH unchanged.
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Previously 'singularity help' & co. would all fail on Guix System
because Coreutils, grep, etc. were not found in $PATH.
* gnu/packages/linux.scm (singularity)[source](snippet): Remove "PATH"
setting from 'bin/singularity.in'.
2019-03-05 23:08:53 +01:00
fbf26cbcf3
gnu: singularity: Patch 'Makefile.in' in a snippet.
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* gnu/packages/linux.scm (singularity)[source](snippet, modules): New
fields.
[arguments]: Remove 'disable-install-hook' phase.
2019-03-05 23:08:53 +01:00
Ricardo Wurmus