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8481 Commits

Author SHA1 Message Date
Ricardo Wurmus 91781b7498 gnu: r-scales: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.3.0.
 2015-09-21 11:04:17 +02:00
Ricardo Wurmus c009bb5a40 Update CRAN mirrors. 
* guix/download.scm (%mirrors): Update mirror list for CRAN.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 2a3a8ae753 gnu: Add r-dplyr. 
* gnu/packages/statistics.scm (r-dplyr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra ffd4b47851 gnu: Add r-r6. 
* gnu/packages/statistics.scm (r-r6): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 5b9789a6ff gnu: Add r-testthat. 
* gnu/packages/statistics.scm (r-testthat): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 834f7ff3c0 gnu: Add r-crayon. 
* gnu/packages/statistics.scm (r-crayon): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra b668a95cf3 gnu: Add r-memoise. 
* gnu/packages/statistics.scm (r-memoise): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 0661b4db2e gnu: Add r-pryr. 
* gnu/packages/statistics.scm (r-pryr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 1cf1cbb0ac gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 4f0e84845d gnu: Add r-microbenchmark. 
* gnu/packages/statistics.scm (r-microbenchmark): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 213656b95b gnu: Add r-knitr. 
* gnu/packages/statistics.scm (r-knitr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra ea3a80957a gnu: Add r-yaml. 
* gnu/packages/statistics.scm (r-yaml): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 3f8ac35330 gnu: Add r-markdown. 
* gnu/packages/statistics.scm (r-markdown): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra acbb40fa20 gnu: Add r-mime. 
* gnu/packages/statistics.scm (r-mime): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra ad3f005bdd gnu: Add r-highr. 
* gnu/packages/statistics.scm (r-highr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra c5bf3abe34 gnu: Add r-formatr. 
* gnu/packages/statistics.scm (r-formatr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 256ccc926c gnu: Add r-evaluate. 
* gnu/packages/statistics.scm (r-evaluate): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 675c9f447b gnu: Add r-bh. 
* gnu/packages/statistics.scm (r-bh): New variable.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus 9cda36227b gnu: Use cran-uri in source expressions. 
* gnu/packages/statistics.scm (r-colorspace, r-dichromat, r-digest,
  r-gtable, r-labeling, r-magrittr, r-munsell, r-rcpp, r-plyr, r-proto,
  r-rcolorbrewer, r-stringi, r-stringr, r-reshape2, r-scales, r-ggplot2,
  r-assertthat, r-lazyeval, r-dbi): Use cran-uri in source expressions.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus a52b625152 import: cran-sxml->sexp: Use cran-uri in package expression. 
* guix/import/cran.scm (cran-sxml->sexp): Use the cran-uri procedure in
  the generated package expression.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus 5546114e73 build: Add cran-uri procedure. 
* guix/build-system/r.scm (cran-uri): New procedure.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus fed5a6898b gnu: Add shotwell. 
* gnu/packages/gnome.scm (shotwell): New variable.
 2015-09-21 07:45:20 +02:00
Ricardo Wurmus b0f9c4b86c gnu: Add gexiv2. 
* gnu/packages/gnome.scm (gexiv2): New variable.
 2015-09-21 07:31:50 +02:00
Ricardo Wurmus af8f9f231e gnu: Add libgee. 
* gnu/packages/gnome.scm (libgee): New variable.
 2015-09-21 07:31:42 +02:00
Eric Bavier da494dad8e gnu: autogen: Update to 5.18.6. 
* gnu/packages/autogen.scm (autogen): Update to 5.18.6.
 2015-09-20 15:09:52 -05:00
Eric Bavier f210647da2 gnu: gnu-pw-mgr: Update to 1.5. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.5.
 2015-09-20 15:09:51 -05:00
Ludovic Courtès 8fcac19975 Thank Petter. 2015-09-20 22:06:48 +02:00
Ludovic Courtès 07779d0add linux-initrd: Add LUKS/dm-crypt modules to the initrd. 
Suggested by Petter <petter@mykolab.ch>
and Mark H Weaver <mhw@netris.org>.

Partly fixes <http://bugs.gnu.org/19190>.

* gnu/system/linux-initrd.scm (base-initrd)[linux-modules]: Add dm-crypt
  and xts.
 2015-09-20 22:05:50 +02:00
Ludovic Courtès cc0e575a94 linux-boot: Mount /dev as a devtmpfs from the start. 
Suggested by Petter <petter@mykolab.ch>
and Mark H Weaver <mhw@netris.org>.
Reported by Duncan Keall <duncan@duncankeall.com>.

Partly fixes <http://bugs.gnu.org/19190> by populating /dev/mapper
early enough.

* gnu/build/linux-boot.scm (mount-essential-file-systems): Mount /dev as
  a devtmpfs.
  (move-essential-file-systems): Add /dev.
  (mount-root-file-system): Mount /rw-root/dev as a devtmpfs instead of
  calling 'make-essential-device-nodes'.
  (boot-system): Remove call to 'make-essential-device-nodes'.
* gnu/system/file-systems.scm (%devtmpfs-file-system): Remove.
* doc/guix.texi (File Systems): Adjust accordingly.
 2015-09-20 22:05:36 +02:00
Ricardo Wurmus 7ee5db15bf gnu: openal: Use full path to audio backend libraries. 
* gnu/packages/audio.scm (openal)[arguments]: Add build phase to patch in the
  full paths to backend audio libraries.
 2015-09-20 13:43:38 +02:00
Ricardo Wurmus 594360f508 gnu: vpnc: Use https for source URL. 
* gnu/packages/vpn.scm (vpnc)[source]: Use https protocol for source URL.
 2015-09-20 11:37:43 +02:00
Ricardo Wurmus 127b04d741 gnu: lilypond: Update to 2.19.27. 
* gnu/packages/music.scm (lilypond): Update to 2.19.27.
  [inputs]: Add font-tex-gyre.
 2015-09-20 11:37:36 +02:00
Ricardo Wurmus 7d1b5022e9 gnu: sfml: Update to 2.3.2. 
* gnu/packages/game-development.scm (sfml): Update to 2.3.2.
  [native-inputs]: Remove.
 2015-09-20 10:08:26 +02:00
Cyril Roelandt d7af106987 gnu: Add python2-keyring. 
* gnu/packages/python.scm (python2-keyring): New variable.
 2015-09-20 04:42:15 +02:00
Cyril Roelandt 7261d9eb16 gnu: Add python2-pyflakes and fix python2-pyflakes-0.8.1. 
* gnu/packages/python.scm (python2-pyflakes): New variable.
* gnu/packages/python.scm (python2-pyflakes-0.8.1): Fix the definition.
 2015-09-20 04:41:51 +02:00
Cyril Roelandt 350ba0a32b gnu: Add python-prettytable 
* gnu/packages/python.scm (python-prettytable,
  python2-prettytable): New variables.
 2015-09-20 04:29:10 +02:00
David Thompson f88ee3ade7 gnu: avahi: Enable libdns_sd compatibility. 
* gnu/packages/avahi.scm (avahi): Add '--enable-compat-libdns_sd' configure
  flag.
 2015-09-19 21:38:33 -04:00
Mark H Weaver 65d54af49f gnu: icu4c: Add fixes for CVE-2014-6585 and CVE-2015-1270. 
* gnu/packages/patches/icu4c-CVE-2014-6585.patch,
  gnu/packages/patches/icu4c-CVE-2015-1270.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/icu4c.scm (icu4c)[source]: Add patches.
 2015-09-19 21:35:18 -04:00
Andreas Enge a5002ae77c gnu: Add R/qtl. 
* gnu/packages/bioinformatics.scm (r-qtl): New variable.

Co-authored-by: Pjotr Prins <pjotr.guix@thebird.nl>
 2015-09-20 00:32:45 +02:00
Andreas Enge e49b339608 gnu: libmtp: Add additional MTP devices. 
* gnu/packages/patches/libmtp-devices.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/patches/libmtp-devices.patch (libmtp)[source]: Add patch.
 2015-09-19 23:38:51 +02:00
Mark H Weaver 257abebba3 gnu: gtk+: Adapt pre-configure phase to version 3.16.6. 
This is a followup to commit a35b8fc6c4.

* gnu/packages/gtk.scm (gtk+)[arguments]: In 'pre-configure' phase, remove
  substitutions of 'gtk-update-icon-cache' in demo Makefiles.
 2015-09-19 17:32:10 -04:00
Pjotr Prins edb15985f1 gnu: Add bioruby. 
* gnu/packages/bioinformatics.scm (bioruby): New variable.
 2015-09-19 12:41:52 -04:00
Pjotr Prins 28c5d42d35 gnu: Add ruby-libxml. 
* gnu/packages/ruby.scm (ruby-libxml): New variable.
 2015-09-19 12:31:42 -04:00
Ricardo Wurmus 7ac4610f7e gnu: Add ruby-shindo. 
* gnu/packages/ruby.scm (ruby-shindo): New variable.
 2015-09-19 08:51:27 -04:00
Ricardo Wurmus 8528365b0e gnu: Add ruby-formatador. 
* gnu/packages/ruby.scm (ruby-formatador): New variable.
 2015-09-19 08:51:13 -04:00
Ricardo Wurmus d152162fc1 gnu: Add ruby-notiffany. 
* gnu/packages/ruby.scm (ruby-notiffany): New variable.
 2015-09-19 08:49:11 -04:00
Ricardo Wurmus c5d14d4228 gnu: Add ruby-shellany. 
* gnu/packages/ruby.scm (ruby-shellany): New variable.
 2015-09-19 08:45:12 -04:00
Ricardo Wurmus 70b4cf3818 gnu: Add ruby-nenv. 
* gnu/packages/ruby.scm (ruby-nenv): New variable.
 2015-09-19 08:44:13 -04:00
Ricardo Wurmus ec79018e68 gnu: Add ruby-lumberjack. 
* gnu/packages/ruby.scm (ruby-lumberjack): New variable.
 2015-09-19 08:43:23 -04:00
Pjotr Prins 6aaa815e9f gnu: Add ruby-docile. 
* gnu/packages/ruby.scm (ruby-docile): New variable.
 2015-09-19 08:34:14 -04:00