Fixes <https://bugs.gnu.org/30184>.
Regression introduced in 297e04d660.
Reported by Christopher Baines <mail@cbaines.net>.
* guix/scripts/publish.scm (nar-response-port): Add 'compression'
parameter and honor it.
(http-write): Get 'x-nar-compression' from the initial RESPONSE.
Suggested by atw on #guix.
* gnu/services/shepherd.scm (shepherd-service-file): Use 'scheme-file'
instead of 'gexp->file'.
(shepherd-configuration-file): Likewise, and adjust to non-monadic
style.
(shepherd-boot-gexp): Adjust accordingly.
* guix/scripts/system.scm (upgrade-shepherd-services): Use
'lower-object' in addition to 'shepherd-service-file'.
Fixes <https://bugs.gnu.org/30155>.
The effect can be seen in the package graph produced by:
guix graph -e '(@@ (gnu packages commencement) static-bash-for-glibc)'
This reduces the number of "duplicate" nodes in this graph, i.e.,
distinct package objects that correspond to the same derivation (objects
that are not 'eq?' but semantically equal.)
* gnu/packages/commencement.scm (linux-libre-headers-boot0): Make an
'mlambda' instead of a 'lambda'.
(hurd-core-headers-boot0): Ditto.
Mitigates <https://bugs.gnu.org/29881>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.
* guix/ui.scm (load*): Unset '%fresh-auto-compile' only on Guile 2.2.3.
Previously we were looking at the load of the past 5 minutes, which
means that, after a build, we could end up waiting for 5 minutes for
that metric to be low enough.
* guix/scripts/offload.scm (machine-load): Compute RAW based on ONE, not
FIVE.
Wrap files in bin/ and sbin/ with the location of the gem itself and the
location of any other gems in use (GEM_PATH). This ensures that the bin files
will run with the right environment when executed.
It does however mean that native-inputs will also get wrapped up in any
binaries, which is not good, as it increases the size of the closure, and
risks this code being used at runtime.
* guix/build/ruby-build-system.scm (wrap): New procedure.
(%standard-phases): Add the wrap phase.
A modified copy of wrap-program from (guix build utils). The wrap-program
procedure doesn't work well for Ruby scripts, as it breaks using the -S flag
with ruby to execute the script, as when -S is passed to ruby, it expects the
script on the PATH to use ruby in the shebang, and not bash.
Therefore, to wrap the program, but keep the shebang as ruby, wrap it with a
ruby script instead.
wrap-ruby-program uses .real/foo rather than .foo-real, as this might be
neater. This procedure also includes a call to Gem.clear_paths to make it
possible to set the GEM_PATH through this method, and for it to take effect.
* gnu/build/ruby-build-system.scm (wrap-ruby-program): New procedure.
* guix/build/ruby-build-system.scm (install): Install gems to the vendor
directory, rather than the GEM_HOME. The vendor directory does not include
the version of ruby used to install the gem in the path, which makes it
easier to add it to the GEM_PATH for all versions of ruby to use.
(gem-home): Remove procedure.
* gnu/packages/ruby.scm (ruby, ruby-2.1)[native-search-paths]: Switch to
lib/ruby/vendor_ruby.
(ruby-1.8)[native-search-paths]: Remove native-search-paths.
(gem-directory): Remove procedure.
(ruby-ansi, ruby-ae)[arguments]: Remove use of gem-directory.
(ruby-metaclass, ruby-instantiator, ruby-introspection, ruby-mocha,
ruby-nokogiri, ruby-minitest-tu-shim, ruby-redcloth)[arguments]: Remove use
of gem-home.
(ruby-git, ruby-httpclient)[arguments]: Remove use of GEM_HOME.
* gnu/packages/databases.scm (es-dump-restore)[arguments]: Remove use of
GEM_HOME.
This mostly reverts 17af5d51de.
Suggested by Andy Wingo <wingo@igalia.com>.
* guix/ssh.scm (remote-daemon-channel)[redirect]: Remove 'read!' FFI
hack. Use buffered ports.
This fixes a regression in 'retrieve-files*' introduced in
896fec476f, whereby (guix scripts offload)
would not read the initial sexp now sent by the remote host via
'store-export-channel'. This would effectively prevent file retrieval
entirely when offloading.
* guix/ssh.scm (retrieve-files*): New procedure, like former
'retrieve-files' but with an extra #:import parameter.
(retrieve-files): Rewrite in terms of 'retrieve-files*'.
(file-retrieval-port): Make private.
* guix/scripts/offload.scm (transfer-and-offload): Pass #:import to
'retrieve-files*'.
(retrieve-files*): Remove.
Previously the redirect code could end up exiting prematurely because of
an uninteresting "exceptional condition" on the socket (info "(libc)
Waiting for I/O").
* guix/ssh.scm (remote-daemon-channel): Pass the empty list as the third
argument to 'select'. It was a mistake to pass a non-empty list there
in the first place.
Previously 'process-stderr' would always pass a bytevector of MAX-LEN to
then daemon in the %stderr-read case (i.e., 'import-paths'), instead of
LEN (where LEN <= MAX-LEN).
In practice the extra bytes didn't cause a protocol violation or
anything because they happen at the end of the stream, which typically
contains the canonical sexp of the signature, and the extra zeros were
just ignored.
* guix/serialization.scm (write-bytevector): Add optional 'l' parameter
and honor it.
* guix/store.scm (process-stderr): Pass LEN to 'write-bytevector'.
This works around <https://bugs.gnu.org/30066> and noticeably improves
performance when using GUIX_DAEMON_SOCKET=ssh://HOST (the redirect code
was transferring data to guix-daemon one byte at a time!).
* guix/ssh.scm (remote-daemon-channel)[redirect]: Define 'read!' and use
it instead of 'get-bytevector-some'.
This was harmless but non-compliant and unnecessary.
* guix/scripts/publish.scm <top level>: Rename "Guix-Nar-Compression" to
"X-Nar-Compression" as should have always been.
(render-nar, nar-response-port): Adjust accordingly.
(strip-headers): New procedure.
(sans-content-length, with-content-length): Use it.
Reported by Fis Trivial <ybbs.daans@hotmail.com>.
Fixes <https://bugs.gnu.org/28987>.
* guix/import/crate.scm (crate-fetch): Check whether the "license" info
is present.
This adjusts the workaround for <http://bugs.gnu.org/21093> so that it's
not limited to a single content-type.
* guix/scripts/publish.scm (render-nar/cached): Add the 'x-raw-file'
header on the response.
(render-content-addressed-file): Likewise.
(with-content-length): Remove the 'x-raw-file' header.
(http-write): Instead of dispatching on 'application/octet-stream',
check whether 'x-raw-file' is set to determine whether to spawn a
thread.
'guix copy --from' now reports messages much more useful than "failed to
retrieve files".
* guix/ssh.scm (store-export-channel)[export]: Wrap 'use-modules' in
'catch' and 'with-store' in 'guard'. Check for invalid items. Write a
status sexp on stdout.
(raise-error): New macro.
(retrieve-files): Read the initial status sexp and report errors
accordingly.
This saves 18 bytes on each 404 narinfo response.
* guix/scripts/publish.scm (render-narinfo): Pass #:phrase to
'not-found'.
(render-narinfo/cached): Likewise.
* guix/scripts/build.scm (numeric-extension?, tarball-base-name): New
procedures, formerly in 'package-with-source'.
(transform-package-source)[new-sources]: Look for '=' in URI. Each
element of the list of now a (PKG VERSION SOURCE) tuple.
Pass VERSION to 'package-with-source'.
(package-with-source): Add 'version' parameter and honor it.
* tests/scripts-build.scm ("options->transformation, with-source, PKG=URI")
("options->transformation, with-source, PKG@VER=URI"): New tests.
* doc/guix.texi (Package Transformation Options): Document the new
forms.
This is a followup to 614fffe427, which
broke cross-compilation to i686-w64-mingw32.
* guix/build-system/gnu.scm (standard-cross-packages): Add
"cross-libc:static" only when LIBC has a "static" output.
Fixes a regression whereby the host libc.a would be missing when
cross-compiling.
This is a followup to commit 6dff905e51.
* guix/build-system/gnu.scm (standard-cross-packages): Add the
"cross-libc:static".
This would crash 'guix refresh -u' with source URLs ending in
"…/v1.2.3".
* guix/upstream.scm (package-update): Be stricter when determining
ARCHIVE-TYPE.
Fixes <https://bugs.gnu.org/29761>.
Reported by Martin Castillo <castilma@uni-bremen.de>.
* guix/scripts/gc.scm (argument->verify-options): New procedure.
(%options) ["verify"]: Adjust to use it.
* tests/guix-gc.sh: Add test.
Fixes 'guix pull'.
Reported by ofosos on #guix.
* guix/man-db.scm: Use 'module-autoload!' instead of 'module-use!'.
so that (gdbm) is not loaded until we need it.
Fixes <https://bugs.gnu.org/29654>.
Reported by Ruud van Asseldonk <dev+guix@veniogames.com>.
This also speeds up database creation compared to "man-db
--create" (less than half the time, on a warm cache, for 19k pages.)
* guix/man-db.scm: New file.
* Makefile.am (MODULES_NOT_COMPILED): Add it.
* guix/profiles.scm (manual-database): Rewrite to use (guix man-db).
* guix/scripts/offload.scm (check-machine-status): New procedure.
(guix-offload): Call it when the argument is "status".
* doc/guix.texi (Daemon Offload Setup): Document it.
* guix/scripts/system.scm (show-help): Add expression option.
(%options): Ditto.
(guix-system): Allow commands taking a file as an argument to use an
expression instead.
(process-action): Read operating-system from expression or file.
* doc/guix.texi (Invoking guix system): Introduce the expression option.
* gnu/bootloader/extlinux.scm (install-extlinux): Factorize bootloader
writing in a new procedure write-file-on-device defined in (gnu build
bootloader).
* gnu/build/bootloader.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
* gnu/system/vm.scm (qemu-img): Adapt to import and use (gnu build bootloader)
module during derivation building.
* gnu/scripts/system.scm (bootloader-installer-derivation): Ditto.
This reduces max RSS from 1.3G to 1.0G.
* guix/derivations.scm (invalidate-derivation-caches!): New procedure.
* build-aux/hydra/gnu-system.scm (hydra-jobs): Use it. Add 'format'
call.
This has little or no run-time impact and slightly reduces the memory
footprint.
* guix/derivations.scm (derivation-hash): Replace 'mlambda' with
'lambda'.
* guix/memoization.scm (<cache>): New record type.
(define-lookup-procedure, define-update-procedure): New macros.
(cache-ref, cacheq-ref, cache-set!, cacheq-set!): New procedures.
(cached/mv, cachedq/mv, cached, cachedq): Use them instead of 'hash-ref'
and 'hash-set!'.
(%make-hash-table*): When 'profiled?' returns true, return a <cache>
object.
(define-cache-procedure): Adjust to show cache lookups and hits.
* guix/memoization.scm (%memoization-tables): New variable.
(%make-hash-table*, show-memoization-tables): New procedures.
(make-hash-table*): New macro.
Add top-level call to 'register-profiling-hook!'.
(memoize): Adjust to pass the resulting procedure to
'make-hash-table*'.
(%mlambda): Likewise.
Fixes <https://bugs.gnu.org/29255>.
Reported by Ben Sturmfels <ben@sturm.com.au>.
* guix/ui.scm (display-collision-resolution-hint): New procedure.
(call-with-error-handling): Call it upon '&profile-collistion-error'.
* guix/scripts/lint.scm (check-vulnerabilities): Also check for CVEs
listed as mitigated in the package properties.
* tests/lint.scm ("cve: known safe from vulnerability"): New test.
'package-grafts' returns a list of potentially applicable grafts, which
'cumulative-grafts' then narrows by looking at store item references and
determining the subset of the grafts that's actually applicable.
Until now, 'package-grafts' would traverse native inputs and would thus
return a large superset of the applicable grafts, since native inputs
are not in the reference graph by definition. This patch fixes that by
having 'package-grafts' ignore entirely native inputs from the
dependency graph.
* guix/packages.scm (fold-bag-dependencies)[bag-direct-inputs*]: Add
special case for libc.
* guix/packages.scm (bag-grafts)[native-grafts, target-grafts]: Remove.
[grafts]: New procedure.
Use it.
* tests/packages.scm ("package-grafts, grafts of native inputs
ignored"): New test.
Previously recursive calls to 'loop' would always consider all the bag
inputs rather than those corresponding to NATIVE?.
* guix/packages.scm (fold-bag-dependencies)[bag-direct-inputs*]: New
procedure. Use it both in the 'match' expression and in its body.
This is a followup to 2815fca142.
* guix/profiles.scm (profile-derivation)[builder]: Remove
'debug-disable' call, which was ineffective.
Pass #:env-vars to 'gexp->derivation'.
This fixes a regression introduced in
2f60084f77, whereby the profile derivation
would fail to run on Guile 2.0 (as is the case with "guix package
--bootstrap").
Reported by Christopher Baines.
* guix/profiles.scm (profile-derivation)[builder]: Use _IO* but add
'debug-disable' call.
Previously the "manual-database" derivation would always import the
host's srfi-{19,26}.scm files in the build side. In practice this means
that different users could get different manual-database.drv depending
on the Guile version they're using in the host.
For example, the (gnu tests install) tests would fail if the host was
running Guile 2.2.3 because the guest is running 2.2.2, and thus has
different srfi-{19,26}.scm files. The manual-database.drv would need to
be built from source, which would fail because prerequisites were
missing.
Reported by Mathieu Othacehe <m.othacehe@gmail.com>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=29409#96>.
* guix/profiles.scm (manual-database): Do not pass #:modules to
'gexp->derivation'. Wrap 'build' gexp in 'with-imported-modules' form.
* guix/scripts/offload.scm (build-machines): Comment out
'(set! %fresh-auto-compile #t)' since with Guile 2.2.3 it could lead to
an actual rebuild of everything that gets loaded from there on. See
<https://bugs.gnu.org/29226>.
* guix/ui.scm (load*): Likewise.
Until now it would print the name of each store item being copied, which
was verbose and unhelpful.
* guix/scripts/system.scm (copy-closure): Use 'progress-reporter/bar'
and 'call-with-progress-reporter'.
(guix-system): Parameterize 'current-terminal-columns'.
* guix/scripts/system.scm (copy-item): Add 'references' argument and
remove 'references*' call. Turn into a non-monadic procedure.
(copy-closure): Remove initial call to 'references*'. Only pass ITEM to
'topologically-sorted*' since that's equivalent. Compute the list of
references corresponding to TO-COPY and pass it to 'copy-item'.
Previously things returned by 'program-file', such as %MODPROBE-WRAPPER
in (gnu services), would refer to 'guile-final'. This would introduce
'guile-final' in the system closure, which is otherwise absent. By
referring to 'guile-2.2' we remove that extra Guile.
* guix/gexp.scm (default-guile): Refer to GUILE-2.2 instead of
GUILE-FINAL.
This avoids repeated deprecation messages, particularly while running
'guix system build' or similar.
* guix/gexp.scm (gexp->derivation): Add #:deprecation-warnings. Pass it
to 'compiled-modules'.
(compiled-modules): Add #:deprecation-warnings and honor it.
* doc/guix.texi (G-Expressions): Update 'gexp->derivation'
documentation.
* guix/packages.scm (patch-and-repack): Pass #:deprecation-warnings #t.
Reported at <https://bugs.gnu.org/27943>
by Danny Milosavljevic <dannym@scratchpost.org>.
* guix/scripts/lint.scm (%distro-directory): New variable.
(check-patch-file-names): Add check for the file name length.
* tests/lint.scm ("patches: file name too long"): New test.
Fixes <https://bugs.gnu.org/25020>.
Reported by Hartmut Goebel <h.goebel@crazy-compilers.com>.
* guix/gnu-maintenance.scm (latest-ftp-release)[contains-digit?]: Remove.
Relax test as to whether to recurse into subdirectories.
Fixes <https://bugs.gnu.org/29358>.
Reported by Marius Bakke <mbakke@fastmail.com>.
* guix/ui.scm (known-variable-definition): Add 'visited' set to guard
against cycles on 2.0.
This reverts commit 5f93d97005.
'guix pull' would fail because (guix self) needs 'scheme-files'
from (guix discovery), which was not exported until now.
This mitigates <https://bugs.gnu.org/27284>.
* guix/self.scm: New file.
* Makefile.am (MODULES): Add it.
* build-aux/build-self.scm (libgcrypt, zlib, gzip, bzip2, xz)
(false-if-wrong-guile, package-for-current-guile, guile-json)
(guile-ssh, guile-git, guile-bytestructures): Remove.
(build): Rewrite to simply delegate to 'compiled-guix'.
* gnu/packages.scm (%distro-root-directory): Rewrite to try different
directories.
* guix/discovery.scm (guix): Export 'scheme-files'.
* guix/scripts/pull.scm (build-and-install): Split into...
(install-latest): ... this. New procedure. And...
(build-and-install): ... this, which now takes a monadic value argument.
(indirect-root-added): Remove.
(guix-pull): Call 'add-indirect-root'. Call 'build-from-source' and
pass the result to 'build-and-install'.
This makes 'latest-repository-commit' significantly more efficient and
reduces disk usage in the store.
* guix/git.scm (copy-to-store)[dot-git?]: New procedure.
Pass it as the #:select? argument to 'add-to-store'.
Fixes <https://bugs.gnu.org/29335>.
* guix/zlib.scm (close-procedure): Remove.
(make-gzip-input-port): Do (dup (fileno port)) to get a file descriptor
for 'gzdopen'. Close PORT before returning. Use 'gzclose' as the
'close' procedure of the returned port.
(make-gzip-output-port): Likewise.
* guix/workers.scm (worker-thunk): Add (const #f) as the 'catch'
handler, and move previous handler as pre-unwind handler. Protect
against 'make-stack' returning #f.
Fixes <https://bugs.gnu.org/28779>.
Reported by Eric Bavier <bavier@cray.com>.
* guix/workers.scm (<pool>)[busy]: New field.
(worker-thunk): Add #:idle and #:busy and use them.
(make-pool): Pass #:busy and #:idle to 'worker-thunk'. Pass a 'busy'
value to '%make-pool'.
* guix/workers.scm (pool-idle?): Check whether 'pool-busy' returns zero
and adjust docstring.
That way CVE fetching benefits from 'If-Modified-Since' handling.
* guix/http-client.scm (http-fetch/cached): Add #:write-cache and
#:cache-miss parameters and honor them.
* guix/cve.scm (%current-year-ttl, %past-year-ttl): Reduce.
(call-with-cve-port): Remove.
(write-cache): New procedure.
(fetch-vulnerabilities): Rewrite in terms of 'http-fetch/cached'.
This is another instance of <https://bugs.gnu.org/22966>.
The Microsoft-IIS/7.5 server at static.nvd.nist.gov would sometimes hang
when receiving our requests byte by byte.
* guix/build/download.scm (tls-wrap) [!guile-2.0]: Add 'setvbuf' call.
This ensures the timeout applies when connecting to the port returned by
PASV.
* guix/ftp-client.scm (ftp-list): Add #:timeout parameter. Use
'connect*' instead of 'connect' and pass TIMEOUT.
(ftp-retr): Likewise.
* guix/build/download.scm (ftp-fetch): Pass TIMEOUT to 'ftp-retr'.
Suggested by Dave Love <fx@gnu.org>.
* guix/build-system/gnu.scm (%license-file-regexp): New variable.
(gnu-build): Add #:license-file-regexp and use it.
(gnu-cross-build): Likewise.
* guix/build/gnu-build-system.scm (%license-file-regexp): New variable.
(install-license-files): New procedure.
(%standard-phases): Add it.
* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL.
* guix/import/cran.scm (latest-bioconductor-release, fetch-description):
Adjust because bioconductor-uri now returns a list.
* guix/import/cran.scm (%bioconductor-version,
%bioconductor-packages-list-url): New variables.
(bioconductor-packages-list, latest-bioconductor-package-version): New
procedures.
Suggested by Marius Bakke <mbakke@fastmail.com>
in <https://bugs.gnu.org/29177>.
* guix/scripts/refresh.scm (all-packages): Pass #:select? to
'fold-packages'.
Fixes <https://bugs.gnu.org/29091>.
Reported by Eric Bavier <bavier@cray.com>.
* guix/build/compile.scm (relative-file): New procedure.
(load-files): Use it before calling 'file-name->module-name'.
(compile-files): Likewise before calling 'scm->go'.
* guix/build/pull.scm (build-guix): Remove 'with-directory-excursion'
and file name hack from ce33c3af76.
Pass OUT to 'all-scheme-files'.
* guix/download.scm (%mirrors)[cpan]: Update the list of CPAN mirrors (of
which several are dead) with a more-or-less geographically diverse selection.
Mark H Weaver