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43836 Commits

Author SHA1 Message Date
Ricardo Wurmus c030eb50c5
gnu: r-tximport: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.0.
 2019-05-06 00:14:36 +02:00
Ricardo Wurmus 5b65a85949
gnu: r-mutationalpatterns: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.10.0.
 2019-05-06 00:14:36 +02:00
Ricardo Wurmus 45aeb4eb1d
gnu: r-bamsignals: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.16.0.
 2019-05-06 00:14:36 +02:00
Ricardo Wurmus 23ce7f3b0b
gnu: r-rhtslib: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.1.
 2019-05-06 00:14:36 +02:00
Ricardo Wurmus c648e672b7
gnu: r-zlibbioc: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.30.0.
 2019-05-06 00:14:36 +02:00
Ricardo Wurmus 3be113b706
gnu: r-motifrg: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.28.0.
 2019-05-06 00:14:35 +02:00
Ricardo Wurmus a7143246f8
gnu: r-seqlogo: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.50.0.
 2019-05-06 00:14:35 +02:00
Ricardo Wurmus 6ef47ac82e
gnu: r-genomation: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.16.0.
 2019-05-06 00:14:35 +02:00
Ricardo Wurmus d726689a70
gnu: r-seqpattern: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.16.0.
 2019-05-06 00:14:35 +02:00
Ricardo Wurmus 651b62c697
gnu: r-bsgenome: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.52.0.
 2019-05-06 00:14:35 +02:00
Ricardo Wurmus 971df3a784
gnu: r-topgo: Update to 2.36.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.36.0.
 2019-05-06 00:14:34 +02:00
Ricardo Wurmus d31f8d1bd8
gnu: r-genomicfeatures: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.0.
 2019-05-06 00:14:34 +02:00
Ricardo Wurmus 40d97367f0
gnu: r-rtracklayer: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.0.
 2019-05-06 00:14:34 +02:00
Ricardo Wurmus 6ff6973502
gnu: r-genomicalignments: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.0.
 2019-05-06 00:14:34 +02:00
Ricardo Wurmus 8671d1e9d6
gnu: r-summarizedexperiment: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.0.
 2019-05-06 00:14:34 +02:00
Ricardo Wurmus 14561bb9e7
gnu: r-delayedarray: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.10.0.
[propagated-inputs]: Add r-matrix.
 2019-05-06 00:14:34 +02:00
Ricardo Wurmus d2e165496b
gnu: r-biostrings: Update to 2.52.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.52.0.
 2019-05-06 00:14:33 +02:00
Ricardo Wurmus e10b67c797
gnu: r-biocparallel: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.0.
 2019-05-06 00:14:33 +02:00
Ricardo Wurmus 933571ddcd
gnu: r-biomart: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.0.
 2019-05-06 00:14:33 +02:00
Ricardo Wurmus a1b9378a8e
gnu: r-annotationdbi: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.46.0.
 2019-05-06 00:14:33 +02:00
Ricardo Wurmus 4aadfcd296
gnu: r-biobase: Update to 2.44.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.44.0.
 2019-05-06 00:14:33 +02:00
Ricardo Wurmus b35bc56a8a
gnu: r-genomicranges: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.0.
 2019-05-06 00:14:33 +02:00
Ricardo Wurmus bc0e5bc12e
gnu: r-xvector: Update to 0.24.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.24.0.
 2019-05-06 00:14:32 +02:00
Ricardo Wurmus 5fadf39280
gnu: r-limma: Update to 3.40.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.0.
 2019-05-06 00:14:32 +02:00
Ricardo Wurmus 0d094ad9ab
gnu: r-variantannotation: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.0.
[propagated-inputs]: Add r-rhtslib.
 2019-05-06 00:14:32 +02:00
Ricardo Wurmus 1e3f53a489
gnu: r-edger: Update to 3.26.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.0.
 2019-05-06 00:14:32 +02:00
Ricardo Wurmus 6dc05d0a86
gnu: r-genomeinfodb: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.20.0.
 2019-05-06 00:14:32 +02:00
Ricardo Wurmus 38142114b7
gnu: r-iranges: Update to 2.18.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.0.
 2019-05-06 00:14:32 +02:00
Ricardo Wurmus 192ddab3e5
gnu: r-s4vectors: Update to 0.22.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.0.
 2019-05-06 00:14:31 +02:00
Ricardo Wurmus 8bdf7d55be
gnu: r-bioccheck: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.20.0.
 2019-05-06 00:14:31 +02:00
Ricardo Wurmus e01b72d225
gnu: r-biocstyle: Update to 2.12.0. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.12.0.
 2019-05-06 00:14:31 +02:00
Ricardo Wurmus 440af6482a
gnu: r-biocviews: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.0.
 2019-05-06 00:14:31 +02:00
Ricardo Wurmus ce52cab000
gnu: r-grohmm: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.18.0.
 2019-05-06 00:14:31 +02:00
Ricardo Wurmus 49f30903f0
gnu: r-shortread: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.42.0.
 2019-05-06 00:14:31 +02:00
Ricardo Wurmus fe40f55094
gnu: r-gostats: Update to 2.50.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.50.0.
 2019-05-06 00:14:30 +02:00
Ricardo Wurmus 4d88dbe6eb
gnu: r-category: Update to 2.50.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.50.0.
 2019-05-06 00:14:30 +02:00
Ricardo Wurmus 08d2a26d47
gnu: r-gseabase: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.46.0.
 2019-05-06 00:14:30 +02:00
Ricardo Wurmus aa51a241c5
gnu: r-rbgl: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.60.0.
[propagated-inputs]: Add r-bh.
 2019-05-06 00:14:30 +02:00
Ricardo Wurmus 7f737246d8
gnu: r-annotationforge: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.26.0.
 2019-05-06 00:14:30 +02:00
Ricardo Wurmus 0a58282de7
gnu: r-dexseq: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.30.0.
 2019-05-06 00:14:30 +02:00
Ricardo Wurmus 9a39193d45
gnu: r-deseq2: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.24.0.
 2019-05-06 00:14:30 +02:00
Ricardo Wurmus 0183163d1e
gnu: r-genefilter: Update to 1.66.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.66.0.
 2019-05-06 00:14:29 +02:00
Ricardo Wurmus 295f35dfb9
gnu: r-preprocesscore: Update to 1.46.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.46.0.
 2019-05-06 00:14:29 +02:00
Ricardo Wurmus 52b4703c08
gnu: r-rgraphviz: Update to 2.28.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0.
 2019-05-06 00:14:29 +02:00
Ricardo Wurmus 3b13b6d777
gnu: r-units: Update to 0.6-3. 
* gnu/packages/cran.scm (r-units): Update to 0.6-3.
 2019-05-06 00:14:29 +02:00
Ricardo Wurmus 3961b3b900
gnu: Add r-dqrng. 
* gnu/packages/cran.scm (r-dqrng): New variable.
 2019-05-06 00:14:29 +02:00
Ricardo Wurmus b8d6dffbdd
gnu: Add r-sitmo. 
* gnu/packages/cran.scm (r-sitmo): New variable.
 2019-05-06 00:14:29 +02:00
Ricardo Wurmus 0c8960df13
gnu: Add r-clue. 
* gnu/packages/cran.scm (r-clue): New variable.
 2019-05-06 00:14:29 +02:00
Ricardo Wurmus be23c491cb
gnu: Add r-batchtools. 
* gnu/packages/cran.scm (r-batchtools): New variable.
 2019-05-06 00:14:28 +02:00
Ricardo Wurmus 04bf86ba9f
gnu: Add r-blme. 
* gnu/packages/cran.scm (r-blme): New variable.
 2019-05-06 00:14:28 +02:00