89ba9a7226
gnu: r-ldblock: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.0.
2019-05-06 00:14:41 +02:00
a349d57a46
gnu: r-gqtlstats: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.16.0.
2019-05-06 00:14:41 +02:00
105d9e2cb4
gnu: r-gviz: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.0.
2019-05-06 00:14:41 +02:00
1b454f9f69
gnu: r-gwascat: Update to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0.
[propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2, r-gqtlstats,
r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and r-variantannotation.
2019-05-06 00:14:41 +02:00
256609eb46
gnu: r-sushi: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.22.0.
2019-05-06 00:14:41 +02:00
7705165882
gnu: r-fithic: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.10.0.
2019-05-06 00:14:40 +02:00
e998a26e1d
gnu: r-hitc: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.28.0.
2019-05-06 00:14:40 +02:00
65925573be
gnu: r-hdf5array: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
2019-05-06 00:14:40 +02:00
d5625b3a9e
gnu: r-rhdf5lib: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.0.
2019-05-06 00:14:40 +02:00
583b4fd6e3
gnu: r-beachmat: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.0.0.
[inputs]: Remove hdf5 and zlib.
[propagated-inputs]: Rmeove r-hdf5array, r-rcpp, r-rhdf5, and r-rhdf5lib.
2019-05-06 00:14:40 +02:00
029cefdd90
gnu: r-singlecellexperiment: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.6.0.
2019-05-06 00:14:40 +02:00
70d04dc183
gnu: r-scater: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.0.
[propagated-inputs]: Add r-biocneighbors and r-biocsingular; remove r-plyr,
r-reshape2, and r-rhdf5lib.
2019-05-06 00:14:40 +02:00
4540727a21
gnu: r-scran: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.0.
[propagated-inputs]: Add r-bh, r-biocsingular, and r-dqrng; remove r-rhdf5lib.
2019-05-06 00:14:39 +02:00
f2a63d1588
gnu: r-delayedmatrixstats: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.0.
2019-05-06 00:14:39 +02:00
fbf3494972
gnu: Add r-biocfilecache.
...
* gnu/packages/bioconductor.scm (r-biocfilecache): New variable.
2019-05-06 00:14:39 +02:00
fab5f7c8d9
gnu: r-interactivedisplaybase: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.22.0.
2019-05-06 00:14:39 +02:00
975b72fa10
gnu: r-edaseq: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.18.0.
2019-05-06 00:14:39 +02:00
b765fc4a4c
gnu: r-deseq: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.36.0.
2019-05-06 00:14:39 +02:00
95f3a46630
gnu: r-aroma-light: Update to 3.14.0.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.14.0.
2019-05-06 00:14:39 +02:00
dd03589939
gnu: r-msnid: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.0.
2019-05-06 00:14:38 +02:00
b65c264907
gnu: r-msnbase: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.0.
2019-05-06 00:14:38 +02:00
ee386fcb1a
gnu: r-pcamethods: Update to 1.76.0.
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.76.0.
2019-05-06 00:14:38 +02:00
f955afdabf
gnu: r-mzid: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.22.0.
2019-05-06 00:14:38 +02:00
9421e6b610
gnu: r-vsn: Update to 3.52.0.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.52.0.
2019-05-06 00:14:38 +02:00
15f240e317
gnu: r-affy: Update to 1.62.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.62.0.
2019-05-06 00:14:38 +02:00
fdbaa5c1e5
gnu: r-affyio: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.54.0.
2019-05-06 00:14:38 +02:00
5498cc46b3
gnu: r-mzr: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.18.0.
2019-05-06 00:14:37 +02:00
24aabd8fd9
gnu: r-protgenerics: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.16.0.
2019-05-06 00:14:37 +02:00
10cb9919fc
gnu: r-sva: Update to 3.32.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.0.
2019-05-06 00:14:37 +02:00
59bef6eaee
gnu: r-copywriter: Update to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.16.0.
2019-05-06 00:14:37 +02:00
70c44443c3
gnu: r-chipseq: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.34.0.
2019-05-06 00:14:37 +02:00
dbb4aa4a34
gnu: r-annotationfilter: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.8.0.
2019-05-06 00:14:37 +02:00
f6ecdafa11
gnu: r-rhdf5: Update to 2.28.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.28.0.
2019-05-06 00:14:37 +02:00
c030eb50c5
gnu: r-tximport: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.0.
2019-05-06 00:14:36 +02:00
5b65a85949
gnu: r-mutationalpatterns: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.10.0.
2019-05-06 00:14:36 +02:00
45aeb4eb1d
gnu: r-bamsignals: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.16.0.
2019-05-06 00:14:36 +02:00
23ce7f3b0b
gnu: r-rhtslib: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.1.
2019-05-06 00:14:36 +02:00
c648e672b7
gnu: r-zlibbioc: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.30.0.
2019-05-06 00:14:36 +02:00
3be113b706
gnu: r-motifrg: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.28.0.
2019-05-06 00:14:35 +02:00
a7143246f8
gnu: r-seqlogo: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.50.0.
2019-05-06 00:14:35 +02:00
6ef47ac82e
gnu: r-genomation: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.16.0.
2019-05-06 00:14:35 +02:00
d726689a70
gnu: r-seqpattern: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.16.0.
2019-05-06 00:14:35 +02:00
651b62c697
gnu: r-bsgenome: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.52.0.
2019-05-06 00:14:35 +02:00
971df3a784
gnu: r-topgo: Update to 2.36.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.36.0.
2019-05-06 00:14:34 +02:00
d31f8d1bd8
gnu: r-genomicfeatures: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.0.
2019-05-06 00:14:34 +02:00
40d97367f0
gnu: r-rtracklayer: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.0.
2019-05-06 00:14:34 +02:00
6ff6973502
gnu: r-genomicalignments: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.0.
2019-05-06 00:14:34 +02:00
8671d1e9d6
gnu: r-summarizedexperiment: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.0.
2019-05-06 00:14:34 +02:00
14561bb9e7
gnu: r-delayedarray: Update to 0.10.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.10.0.
[propagated-inputs]: Add r-matrix.
2019-05-06 00:14:34 +02:00
d2e165496b
gnu: r-biostrings: Update to 2.52.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.52.0.
2019-05-06 00:14:33 +02:00
e10b67c797
gnu: r-biocparallel: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.0.
2019-05-06 00:14:33 +02:00
933571ddcd
gnu: r-biomart: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.0.
2019-05-06 00:14:33 +02:00
a1b9378a8e
gnu: r-annotationdbi: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.46.0.
2019-05-06 00:14:33 +02:00
4aadfcd296
gnu: r-biobase: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.44.0.
2019-05-06 00:14:33 +02:00
b35bc56a8a
gnu: r-genomicranges: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.0.
2019-05-06 00:14:33 +02:00
bc0e5bc12e
gnu: r-xvector: Update to 0.24.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.24.0.
2019-05-06 00:14:32 +02:00
5fadf39280
gnu: r-limma: Update to 3.40.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.0.
2019-05-06 00:14:32 +02:00
0d094ad9ab
gnu: r-variantannotation: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.0.
[propagated-inputs]: Add r-rhtslib.
2019-05-06 00:14:32 +02:00
1e3f53a489
gnu: r-edger: Update to 3.26.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.0.
2019-05-06 00:14:32 +02:00
6dc05d0a86
gnu: r-genomeinfodb: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.20.0.
2019-05-06 00:14:32 +02:00
38142114b7
gnu: r-iranges: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.0.
2019-05-06 00:14:32 +02:00
192ddab3e5
gnu: r-s4vectors: Update to 0.22.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.0.
2019-05-06 00:14:31 +02:00
8bdf7d55be
gnu: r-bioccheck: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.20.0.
2019-05-06 00:14:31 +02:00
e01b72d225
gnu: r-biocstyle: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.12.0.
2019-05-06 00:14:31 +02:00
440af6482a
gnu: r-biocviews: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.0.
2019-05-06 00:14:31 +02:00
ce52cab000
gnu: r-grohmm: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.18.0.
2019-05-06 00:14:31 +02:00
49f30903f0
gnu: r-shortread: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.42.0.
2019-05-06 00:14:31 +02:00
fe40f55094
gnu: r-gostats: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
4d88dbe6eb
gnu: r-category: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
08d2a26d47
gnu: r-gseabase: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.46.0.
2019-05-06 00:14:30 +02:00
aa51a241c5
gnu: r-rbgl: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.60.0.
[propagated-inputs]: Add r-bh.
2019-05-06 00:14:30 +02:00
7f737246d8
gnu: r-annotationforge: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.26.0.
2019-05-06 00:14:30 +02:00
0a58282de7
gnu: r-dexseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.30.0.
2019-05-06 00:14:30 +02:00
9a39193d45
gnu: r-deseq2: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.24.0.
2019-05-06 00:14:30 +02:00
0183163d1e
gnu: r-genefilter: Update to 1.66.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.66.0.
2019-05-06 00:14:29 +02:00
295f35dfb9
gnu: r-preprocesscore: Update to 1.46.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.46.0.
2019-05-06 00:14:29 +02:00
52b4703c08
gnu: r-rgraphviz: Update to 2.28.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0.
2019-05-06 00:14:29 +02:00
3b13b6d777
gnu: r-units: Update to 0.6-3.
...
* gnu/packages/cran.scm (r-units): Update to 0.6-3.
2019-05-06 00:14:29 +02:00
3961b3b900
gnu: Add r-dqrng.
...
* gnu/packages/cran.scm (r-dqrng): New variable.
2019-05-06 00:14:29 +02:00
b8d6dffbdd
gnu: Add r-sitmo.
...
* gnu/packages/cran.scm (r-sitmo): New variable.
2019-05-06 00:14:29 +02:00
0c8960df13
gnu: Add r-clue.
...
* gnu/packages/cran.scm (r-clue): New variable.
2019-05-06 00:14:29 +02:00
be23c491cb
gnu: Add r-batchtools.
...
* gnu/packages/cran.scm (r-batchtools): New variable.
2019-05-06 00:14:28 +02:00
04bf86ba9f
gnu: Add r-blme.
...
* gnu/packages/cran.scm (r-blme): New variable.
2019-05-06 00:14:28 +02:00
2b9d4f5866
gnu: Add r-scrime.
...
* gnu/packages/cran.scm (r-scrime): New variable.
2019-05-06 00:14:28 +02:00
78735b9f34
gnu: Add r-grimport2.
...
* gnu/packages/cran.scm (r-grimport2): New variable.
2019-05-06 00:14:28 +02:00
8128189976
gnu: Add r-rcpphnsw.
...
* gnu/packages/cran.scm (r-rcpphnsw): New variable.
2019-05-06 00:14:28 +02:00
993912905d
gnu: Add r-biocsingular.
...
* gnu/packages/bioconductor.scm (r-biocsingular): New variable.
2019-05-06 00:14:28 +02:00
72032c9d5f
gnu: Add r-base64url.
...
* gnu/packages/cran.scm (r-base64url): New variable.
2019-05-06 00:14:27 +02:00
dcfa0acd7b
Correct email and license info for Brendan Tildesley.
...
* gnu/packages/audio.scm: Correct email and license info.
* gnu/packages/ebook.scm: Correct email and license info.
* gnu/packages/fonts.scm: Correct email and license info.
* gnu/packages/freedesktop.scm: Correct email and license info.
* gnu/packages/gnome.scm: Correct email and license info.
* gnu/packages/linux.scm: Correct email and license info.
* gnu/packages/lxde.scm: Correct email and license info.
* gnu/packages/python-web.scm: Correct email and license info.
* gnu/packages/python-xyz.scm: Correct email and license info.
* gnu/packages/python.scm: Correct email and license info.
* gnu/packages/video.scm: Correct email and license info.
* gnu/packages/web.scm: Correct email and license info.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 17:16:51 +02:00
ee3ce0d71d
gnu: calibre: Update to 3.42.0.
...
* gnu/packages/ebook.scm (calibre): Update to 3.42.0.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
421c5e92f9
gnu: calibre: Shorten long line.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Shorten long line.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
d6dfe8b634
gnu: calibre: Install man pages.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[install-man-pages]:
New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
f3f017dbf0
gnu: calibre: Delete various junk from source.
...
* gnu/packages/ebook.scm (calibre)[source](snippet): Delete various junk from
source.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
62a97dc0fb
gnu: calibre: Remove libxrender as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Remove libxrender.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
68435a7f55
gnu: calibre: Unbundle python2-odfpy.
...
* gnu/packages/ebook.scm (calibre)[snippet]: Remove all of src/odf.
[inputs]: Add python2-odfpy.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
7312a7d073
gnu: calibre: Remove some comments.
...
* gnu/packages/ebook.scm (calibre): There is no unrar in Guix currently, and
pdftohtml is in poppler, so we can remove this comment.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
eb5f620134
gnu: calibre: Enable tests.
...
* gnu/packages/ebook.scm (calibre): Enable tests.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
cbe399e736
gnu: calibre: Disable sqlite test.
...
* gnu/packages/patches/calibre-remove-test-sqlite.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
4bcd0647b7
gnu: calibre: Disable Qt test.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Disable
Qt test.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
f89f5abada
gnu: calibre: Disable bs4 test.
...
* gnu/packages/patches/calibre-remove-test-bs4.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
6e1ab5fadb
gnu: calibre: Use "linux.py" to install desktop files.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify.
[install-mimetypes]: Remove.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
ad74978a95
gnu: Add python-soupsieve, python2-soupsieve.
...
* gnu/packages/python-xyz.scm (python-soupsieve): New variable.
(python2-soupsieve): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
b01cde1ac9
gnu: calibre: Disable tests that require networking.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
15871b4087
gnu: calibre: Remove unrar test.
...
* gnu/packages/patches/calibre-remove-test-unrar.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
c187c9d786
gnu: python-regex, python2-regex: Update to 2019.04.14.
...
* gnu/packages/python.scm (python-regex, python2-regex): Update to 2019.04.14.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
adc25b68b1
gnu: calibre: Add python2-html2text as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html2text.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
7a82ceb7bb
gnu: Add python-html2text, python2-html2text.
...
* gnu/packages/python-web.scm (python-html2text): New variable.
(python2-html2text): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
13068a8ccf
gnu: calibre: Move font unbundling to after check phase.
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* gnu/packages/ebook.scm (calibre)[snippet]: Modify.
[native-inputs]: Remove font-liberation.
[inputs]: Add font-liberation.
[arguments]<#:phases>[install-font-liberation]: Delete phase.
[unbundle-font-liberation]: New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
4f29902080
gnu: calibre: Add missing dependencies as indicated by tests.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html5lib,
python2-psutil.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
b0038957f5
gnu: calibre: Build rapydscript.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Modify.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
d243b41dd0
gnu: calibre: Use system mathjax.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]:
New phase.
[inputs]: Add js-mathjax.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
4e6f8a1442
gnu: calibre: Update to 3.41.3.
...
* gnu/packages/ebook.scm (calibre): Update to 3.41.3.
[inputs]: Replace python2-cssutils by python2-css-parser.
[snippet]: Modify.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
c8e214e80d
gnu: wgetpaste: Make all dependencies explicit.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Replace limited
‘use-inputs’ phase with a ‘wrap-program’ one.
2019-05-05 00:10:44 +02:00
4d3990c9f3
gnu: wgetpaste: Return #t from all phases.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Return #t from ‘install’ phase.
2019-05-05 00:10:44 +02:00
fbc2531395
gnu: tor: Remove explicit hardening flags.
...
* gnu/packages/tor.scm (tor)[arguments]: Remove #:configure-flags that
merely confirm the defaults.
2019-05-05 00:10:24 +02:00
0d6cfaa3dd
gnu: nano: Update to 4.2.
...
* gnu/packages/nano.scm (nano): Update to 4.2.
2019-05-04 15:43:22 -04:00
8aeef53497
gnu: coq-bignums: Update to 8.9.0.
...
* gnu/packages/coq.scm (coq-bignums): Update to 8.9.0.
2019-05-04 19:41:44 +02:00
f5b0d90490
gnu: coq-mathcomp: Update to 1.8.0.
...
* gnu/packages/coq.scm (coq-mathcomp): Update to 1.8.0.
2019-05-04 19:41:35 +02:00
1f1ea9c0cb
gnu: coq-gappa: Update to 1.3.4.
...
* gnu/packages/coq.scm (coq-gappa): Update to 1.3.4.
2019-05-04 19:41:28 +02:00
e03e1b5584
gnu: coq: Update to 8.9.0.
...
* gnu/packages/coq.scm (coq): Update to 8.9.0.
(coq-autosubst): Update to latest commit.
(coq-equations): Update to 1.2-beta2.
2019-05-04 19:41:04 +02:00
187f9636f1
gnu: ocaml-menhir: Update to 20181113.
...
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20181113.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-05-03 20:46:22 +02:00
52c3cb2687
gnu: Add python-django-extensions.
...
* gnu/packages/django.scm (python-django-extensions): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-03 17:47:30 +02:00
8d73558d50
gnu: Add python-django-taggit.
...
* gnu/packages/django.scm (python-django-taggit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-03 17:47:30 +02:00
c8bb86f51c
gnu: tor: Update to 0.4.0.5.
...
* gnu/packages/tor.scm (tor): Update to 0.4.0.5.
2019-05-03 15:22:22 +02:00
02eb70bd21
gnu: Add python-css-parser, python2-css-parser.
...
* gnu/packages/python-web.scm (python-css-parser, python2-css-parser): New
variables.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 13:58:22 +02:00
c2dd07aba5
gnu: web: Change 'l:' prefix to 'license:'.
...
* gnu/packages/web.scm: Change #:prefix l: to #:prefix license:.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 13:58:21 +02:00
3e85909044
Correct email address for ison.
...
* .mailmap, gnu/packages/lxde.scm: Update email address.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 08:45:55 +02:00
d7afe74d60
gnu: r-cluster: Update to 2.0.9.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.9.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2019-05-03 08:00:54 +02:00
f66f40400c
gnu: r-irkernel: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-irkernel): Update to 1.0.1.
2019-05-03 08:00:54 +02:00
27b4bfbe4b
gnu: r-ouch: Update to 2.14-1.
...
* gnu/packages/cran.scm (r-ouch): Update to 2.14-1.
2019-05-03 08:00:53 +02:00
dea3df2bd1
gnu: r-fs: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-fs): Update to 1.3.0.
2019-05-03 08:00:49 +02:00
8d5edc9cea
gnu: linux-libre: Update to 5.0.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.11.
(%linux-libre-hash): Update hash.
2019-05-02 22:50:01 -04:00
c52fb6e11d
gnu: linux-libre@4.19: Update to 4.19.38.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.38.
(%linux-libre-4.19-hash): Update hash.
2019-05-02 22:49:14 -04:00
4dc3f7c7dc
gnu: linux-libre@4.14: Update to 4.14.115.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.115.
(%linux-libre-4.14-hash): Update hash.
2019-05-02 22:48:26 -04:00
e2474df6ee
gnu: linux-libre@4.9: Update to 4.9.172.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.172.
2019-05-02 22:47:46 -04:00
82329a17f4
gnu: pluma: Use older version of gtksourceview.
...
Reported by L p R n d n <guix@lprndn.info>.
Fixes <https://bugs.gnu.org/35535 >.
* gnu/packages/mate.scm (pluma)[inputs]: Replace gtksourceview with
gtksourceview-3.
2019-05-02 23:12:39 +02:00
2f869b0279
gnu: mate-applets: Use older version of gtksourceview.
...
Reported by L p R n d n <guix@lprndn.info>.
* gnu/packages/mate.scm (mate-applets)[inputs]: Replace gtksourceview with
gtksourceview-3.
2019-05-02 23:12:38 +02:00
48f19e60c4
gnu: le-certs: Update hashes.
...
They added the 3 missing '^M' to all pem certs.
* gnu/packages/certs.scm (le-certs)[inputs]: Update the hashes of
isrgrootx1.pem, letsencryptauthorityx3.pem, letsencryptauthorityx4.pem.
2019-05-02 21:40:41 +08:00
746ac457cc
Merge branch 'version-1.0.0'
2019-05-02 15:32:30 +02:00
c457f109be
gnu: php: Update to 7.3.5.
...
* gnu/packages/php.scm (php): Update to 7.3.5.
2019-05-02 14:53:23 +02:00
d5f4d5b683
gnu: emacs-emms: Update to 5.2.
...
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 5.2.
2019-05-02 11:54:39 +02:00
5f83b5153a
gnu: python-duniterpy: Update to 0.53.1.
...
* gnu/packages/finance.scm (python-duniterpy): Update to 0.53.1.
2019-05-02 10:22:36 +02:00
45a37f5b05
gnu: emacs-relint: Update to 1.7.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.7.
2019-05-02 10:14:18 +02:00
d34984b9fe
gnu: emacs-xr: Update to 1.11.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.11.
2019-05-02 10:13:20 +02:00
c2974d1e46
gnu: faudio: Update to 19.05.
...
* gnu/packages/audio.scm (faudio): Update to 19.05.
2019-05-02 08:57:24 +02:00
9bec3ba4ca
gnu: python-flexmock: Update to 0.10.4.
...
* gnu/packages/check.scm (python-flexmock): Update to 0.10.4.
2019-05-02 00:52:33 +02:00
14da3daafc
gnu: termite: Update to 15.
...
* gnu/packages/terminals.scm (termite): Update to 15.
2019-05-01 22:15:02 +02:00
03c59a2525
gnu: vte-ng: Update to 0.56.2.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.56.2.a.
[native-inputs]: Add GCC-7.
[arguments]: Add GCC7 workaround.
2019-05-01 22:15:02 +02:00
a0d44bb09f
gnu: spice: Update to 0.14.2 [fixes CVE-2019-3813].
...
* gnu/packages/spice.scm (spice): Update to 0.14.2.
2019-05-01 22:15:01 +02:00
a550da6247
gnu: spice-protocol: Update to 0.14.0.
...
* gnu/packages/spice.scm (spice-protocol): Update to 0.14.0.
(spice-protocol-0.12): New public variable.
(spice-gtk)[propagated-inputs]: Change SPICE-PROTOCOL to SPICE-PROTOCOL-0.12.
2019-05-01 22:15:01 +02:00
Ricardo Wurmus