Commit Graph

24316 Commits (69f7cf2bf4ca3ab792438a9e7fb46f78ef0f227a)

Author SHA1 Message Date
Marius Bakke 5668a365d6
gnu: mkfontscale: Update to 1.1.3.
* gnu/packages/xorg.scm (mkfontscale): Update to 1.1.3.
2018-03-07 14:53:24 +01:00
Marius Bakke 0cf985d615
gnu: imagemagick: Update to 6.9.9-37.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-37.
2018-03-07 14:53:24 +01:00
Marius Bakke e07a44891c
gnu: Add gtksourceviewmm.
* gnu/packages/gtk.scm (gtksourceviewmm): New public variable.
2018-03-07 14:53:24 +01:00
Marius Bakke 8e933cb36a
gnu: Use HTTPS on gtkmm.org home pages.
* gnu/packages/gtk.scm (atkmm, gtkmm)[home-page]: Use HTTPS.
* gnu/packages/gnome.scm (libgnomecanvasmm)[home-page]: Likewise.
* gnu/packages/glib.scm (glibmm)[home-page]: Likewise.
2018-03-07 14:53:24 +01:00
Marius Bakke 6a49ae7864
gnu: gtkmm: Use the for-test xorg variant for tests.
* gnu/packages/gtk.scm (gtkmm)[native-inputs]: Replace XORG-SERVER with
XORG-SERVER-1.19.3.
[arguments]: Add #:disallowed-references.
2018-03-07 14:53:24 +01:00
Marius Bakke 29c7b4d638
gnu: gtkmm: Update to 3.22.2.
* gnu/packages/gtk.scm (gtkmm): Update to 3.22.2.
[arguments]: Set #:configure-flags.
2018-03-07 14:53:24 +01:00
Marius Bakke 7700c6ca20
gnu: glibmm: Update to 2.54.1.
* gnu/packages/glib.scm (glibmm): Update to 2.54.1.
[arguments]: Add #:configure-flags.
2018-03-07 14:53:23 +01:00
Oleg Pykhalov 06c15ee585
gnu: Add r-colorout.
* gnu/packages/statistics.scm (r-colorout): New public variable.
2018-03-07 16:38:26 +03:00
Alex Vong 63d9900296
gnu: youtube-viewer: Add '$out/lib/perl5/site_perl/' to search path.
Fixes <https://bugs.gnu.org/30671>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/video.scm (youtube-viewer)[arguments]: In 'wrap-program'
phase, add '$out/lib/perl5/site_perl/' to search path.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-07 11:22:42 +01:00
Charlie Ritter 270750d440
gnu: Add IBM Plex font.
* gnu/packages/fonts.scm (font-ibm-plex): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-03-07 11:22:42 +01:00
Ludovic Courtès abfbdafd0e
linux-initrd: Add a hint for the missing module error.
* gnu/system/linux-initrd.scm (check-device-initrd-modules): Add a
'&fix-hint'.
2018-03-07 11:22:42 +01:00
Ludovic Courtès ca23693d28
linux-initrd: Factorize 'check-device-initrd-modules'.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Move to...
* gnu/system/linux-initrd.scm (check-device-initrd-modules): ... here.
New procedure.
* po/guix/POTFILES.in: Add it.
* guix/scripts/system.scm (check-initrd-modules)[check-device]: Remove.
Use 'check-device-initrd-modules' instead.
2018-03-07 11:22:42 +01:00
Ludovic Courtès 6c4458172d
services: file-systems: Include 'user-file-systems' service.
Previously the KNOWN-FS value used in 'essential-services' would be
incomplete: it would lack all the file systems provided by services that
extend 'file-system-service-type' (/sys/fs/cgroup,
/proc/sys/fs/binfmt_misc, etc.)  Consequently, upon shutdown,
'user-processes' would unmount these file systems before their
corresponding service had been stopped; when their corresponding (e.g.,
'file-system-/proc/sys/fs/binfmt_misc') was stopped, its 'umount' call
would fail.

This was harmless in practice, but this patch makes sure things work as
intended and file systems are unmounted in the right order.

* gnu/services/base.scm (file-system-shepherd-services): Instantiate
'user-file-systems' Shepherd service from here.
(user-unmount-service-type, user-unmount-service): Remove.
* gnu/system.scm (essential-services): Remove call to 'user-unmount-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust comment.
2018-03-07 11:22:42 +01:00
Ludovic Courtès 366ddc1ac5
services: dicod: Depend on 'user-processes'.
* gnu/services/dict.scm (dicod-shepherd-service): Add 'requirement'.
2018-03-07 11:22:41 +01:00
Eric Bavier 2468ca0488
gnu: thefuck: Update to 3.25.
* gnu/packages/admin.scm (thefuck): Update to 3.25
[inputs]: Add python-pyte.
[native-inputs]: Remove python-setuptools.
* gnu/packages/patches/thefuck-test-environ.patch: Adjust to latest source.
2018-03-06 23:33:57 -06:00
Julien Lepiller f70666c9ce
gnu: Add maven-resolver-connector-basic.
* gnu/packages/maven.scm (maven-resolver-connector-basic): New variable.
2018-03-06 23:06:19 +01:00
Julien Lepiller bca6cf54f4
gnu: Add maven-resolver-util.
gnu/packages/maven.scm (maven-resolver-util): New variable.
2018-03-06 23:06:15 +01:00
Julien Lepiller 360537838e
gnu: Add maven-resolver-test-util.
* gnu/packages/maven.scm (maven-resolver-test-util): New variable.
2018-03-06 23:06:12 +01:00
Julien Lepiller d85cb53924
gnu: Add maven-resolver-spi.
* gnu/packages/maven.scm (maven-resolver-spi): New variable.
2018-03-06 23:05:51 +01:00
Julien Lepiller 41125eaff8
gnu: Add maven-resolver-api.
* gnu/packages/maven.scm: New file.
(maven-resolver-api): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-06 23:05:34 +01:00
Leo Famulari 8a325748fb
gnu: isc-dhcp: Update to 4.3.6-P1 [fixes CVE-2018-{5732,5733}].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
2018-03-06 13:34:20 -05:00
Leo Famulari 3b5262865c
gnu: syncthing: Update to 0.14.45.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.45.
[inputs]: Remove go-github-com-xtaci-kcp-go,
go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add
go-github-com-pkg-errors.
2018-03-06 13:24:20 -05:00
Leo Famulari 01794ffce0
gnu: Remove go-github-com-templexxx-xor.
* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
2018-03-06 13:24:20 -05:00
Leo Famulari 6482d30472
gnu: Remove go-github-com-templexxx-cpufeat.
* gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove
variable.
2018-03-06 13:24:20 -05:00
Leo Famulari 7d02ae4b85
gnu: Remove go-github-com-tjfoc-gmsm-sm4.
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari 7915ef0bff
gnu: Remove go-github-com-klauspost-reedsolomon.
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove
variable.
2018-03-06 13:24:19 -05:00
Leo Famulari abb8973544
gnu: Remove go-github-com-klauspost-cpuid.
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari eaca421063
gnu: Remove go-github-com-ccding-go-stun.
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari bb0a84f89d
gnu: Remove go-github-com-xtaci-kcp-go.
* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari 78f19a4754
gnu: Remove go-github-com-xtaci-smux.
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
2018-03-06 13:24:15 -05:00
Marius Bakke 77412c45b1
gnu: re2: Update to 2018-03-01.
* gnu/packages/regex.scm (re2): Update to 2018-03-01.
2018-03-06 18:23:42 +01:00
Marius Bakke 37204750b1
gnu: feh: Update to 2.25.
* gnu/packages/image-viewers.scm (feh): Update to 2.25.
2018-03-06 18:22:26 +01:00
Marius Bakke 6836c228ae
gnu: iceauth: Update to 1.0.8.
* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
2018-03-06 18:16:51 +01:00
Marius Bakke 6f1f8d1312
gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537].
See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for
more information about the vulnerabilities.

* gnu/packages/django.scm (python-django): Update to 1.11.11.
2018-03-06 17:38:12 +01:00
Ricardo Wurmus c072cf57b9
gnu: samtools: Update to 1.7.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus 727d847980
gnu: htslib: Update to 1.7.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus e325c89076
gnu: r-rhdf5: Make build reproducible.
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus fe58ab013b
gnu: r-lambda-r: Run unit tests.
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus 08ddb98aef
gnu: r-gtools: Make output deterministic.
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
2018-03-06 16:03:04 +01:00
Oleg Pykhalov 5ad13e6cdf
gnu: emacs-transmission: Update to 0.12.1.
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
2018-03-06 12:09:02 +03:00
Oleg Pykhalov 69611d3eac
gnu: haskell-mode: Fix find emacs-stream elisp directory.
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
2018-03-06 10:34:59 +03:00
Rutger Helling cee03b267c
gnu: ovmf: Fix build and add FIXME.
* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME
about failing script.
2018-03-06 08:27:07 +01:00
Gábor Boskovits 0f2778029a
gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version.
* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>:
Modify fix-version to use the distibution version of java-aqute-bndlib.
2018-03-05 20:42:48 +01:00
Tobias Geerinckx-Rice c8213ffc52
gnu: perl-email-address: Update to 1.909.
* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 1c3de94cff
gnu: perl-sub-quote: Update to 2.005000.
* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 503a00597b
gnu: perl-xml-compile-cache: Update to 1.06.
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice b5de208e84
gnu: perl-xml-rss: Update to 1.60.
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 437e5fae13
gnu: editres: Update to 1.0.7.
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice cc7a4bbd27
gnu: tocc, libtocc: Use HTTPS home page.
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 55b7cd10c2
gnu: perl-io-socket-ip: Update to 0.39.
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 530df311ac
gnu: perl-www-mechanize: Update to 1.87.
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 9599339c59
gnu: openvpn: Mark up description.
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 0d34993a65
gnu: openvpn: Update to 2.4.5.
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 211748d475
gnu: papi: Use HTTPS home page.
* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
2018-03-05 17:32:08 +01:00
Tobias Geerinckx-Rice f7c870f78a
gnu: papi: Fix documentation location.
* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.
2018-03-05 17:32:08 +01:00
Rutger Helling 0ebc1b934d
gnu: xpra: Update to 2.2.5.
* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
2018-03-05 12:29:37 +01:00
Mark H Weaver 6a4eaafee0
gnu: linux-libre@4.14: Update to 4.14.24.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24.
(%linux-libre-4.14-hash): Update hash.
2018-03-05 03:43:45 -05:00
Mark H Weaver ee483a5626
gnu: linux-libre@4.9: Update to 4.9.86.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
2018-03-05 03:43:02 -05:00
Mark H Weaver 88b1a38e26
gnu: linux-libre@4.4: Update to 4.4.120.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
2018-03-05 03:42:07 -05:00
Christopher Baines 68d70f6ae3
gnu: Add emacs-terraform-mode.
* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
2018-03-05 07:48:49 +00:00
Christopher Baines dc97f7e20e
gnu: Add emacs-hcl-mode.
* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
2018-03-05 07:48:48 +00:00
Efraim Flashner 16718b6776
services: Add openntpd service.
* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to
set openntpd daemon's user and localstatedir. Add a custom phase to not
try to create said directory at install time.
* gnu/services/networking.scm (<openntpd-configuration>): New record type.
(openntpd-shepherd-service, openntpd-service-activation): New procedures.
(openntpd-service-type): New variable.
* doc/guix.texi (Networking Services): Add openntpd documentation.
2018-03-05 08:46:28 +02:00
Tobias Geerinckx-Rice ac1a9ce8b0
gnu: papi: Update phase style.
* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for
SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.
2018-03-04 18:03:46 +01:00
Tobias Geerinckx-Rice 635dd0cc96
gnu: tomb: Update phase style.
* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice 9539016e3a
gnu: tomb: Use HTTPS home page.
* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice ed36949a9d
gnu: footswitch: Update to 0.1-2.deedd87.
* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice bd128d5e88
gnu: footswitch: Remove redundant MKDIR-P.
* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P
before INSTALL-FILE.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice 92793c7b02
gnu: gitolite: Update phase style.
* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 7730b7179c
gnu: gitolite: Update to 3.6.7.
* gnu/packages/version-control.scm (gitolite): Update to 3.6.7.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice d035eaa304
gnu: ii, sic: Use HTTPS home pages.
* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice e0dbead5a7
gnu: ii: Update to 1.8.
* gnu/packages/irc.scm (ii): Update to 1.8.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 53244d1ffa
gnu: cloc: Update phase style.
* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM*
and end phases with #t.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 95943ed7dc
gnu: cloc: Update to 1.76.
* gnu/packages/code.scm (cloc): Update to 1.76.
[source]: Update origin URI scheme.
[inputs]: Add perl-parallel-forkmanager.
2018-03-04 18:03:43 +01:00
Tobias Geerinckx-Rice 03b7195794
gnu: liblo: Mark up description.
* gnu/packages/audio.scm (liblo)[description]: Use @dfn.
2018-03-04 18:03:43 +01:00
Marius Bakke 3e57b7d99b
gnu: multipath-tools: Update to 0.7.4.
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4.
[source]: Download using HTTPS.
2018-03-04 17:54:40 +01:00
Marius Bakke 5275f69e6e
gnu: freexl: Update to 1.0.5 [security fixes].
Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and
CVE-2018-7439.

* gnu/packages/xml.scm (freexl): Update to 1.0.5.
2018-03-04 17:54:40 +01:00
Marius Bakke 5b0b520e22
gnu: ceph: Update to 12.2.4.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags.  Build with
CMAKE-3.11.  Adjust file substitutions.  Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66.  Add PYTHON2-PRETTYTABLE.
2018-03-04 17:54:40 +01:00
Marius Bakke 1568cc14fa
gnu: Add cmake@3.11.
* gnu/packages/cmake.scm (cmake-3.11): New public variable.
2018-03-04 17:54:40 +01:00
Marius Bakke bbce53c4b3
gnu: Add boost@1.66.0.
* gnu/packages/boost.scm (boost-1.66): New public variable.
2018-03-04 17:54:40 +01:00
Marius Bakke 8293d21c66
gnu: java-snappy: Update to 1.1.7.
* gnu/packages/compression.scm (java-snappy): Update to 1.1.7.
[arguments]: Use INVOKE instead of SYSTEM*.  Avoid CMAKE dependency.  Delete
Hadoop test.  Enable fixed test.
[native-inputs]: Add JAVA-COMMONS-LANG and JAVA-COMMONS-IO.
2018-03-04 17:54:40 +01:00
Marius Bakke 5a43735722
gnu: snappy: Update to 1.1.7.
* gnu/packages/compression.scm (snappy): Update to 1.1.7.
[source]: Change to git archive.  Set file-name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.
[description]: Fix infractions.
2018-03-04 17:54:39 +01:00
Marius Bakke 7fa9cca84a
gnu: rocksdb: Update to 5.10.4.
* gnu/packages/databases.scm (rocksdb): Update to 5.10.4.
[source]: Substitute the unbundled copy of GNU Parallel.
[arguments]: Add "V=1" "USE_RTTI=1" and
"ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags.  Set #:test-target to
"check_some".  Respect parallel jobs in 'build-release-libraries' phase and
rename to 'build'.
[license]: Update for changes in 5.5.4.
2018-03-04 17:54:39 +01:00
Danny Milosavljevic 81ed306dee
gnu: inkscape: Disable duplicate icon cache generation.
* gnu/packages/inkscape.scm (inkscape): Disable duplicate icon cache
generation.
2018-03-04 15:44:34 +01:00
Danny Milosavljevic 692f6e457e
gnu: abiword: Disable duplicate icon cache generation.
* gnu/packages/abiword.scm (abiword): Disable duplicate icon cache generation.
2018-03-04 15:43:46 +01:00
Danny Milosavljevic 64cdd73c22
gnu: python-funcy: Fix tests.
* gnu/packages/python.scm (python-funcy)[native-inputs]: Delete python-pytest-warnings.
2018-03-04 15:42:41 +01:00
Gábor Boskovits 48c8622010
gnu: antlr3-3.3: Fix java8 issue.
* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch.
* gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:16:37 +01:00
Gábor Boskovits 4c763b4d67
gnu: antlr3-3.1: Fix java8 issue.
* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch.
* gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:13:47 +01:00
Efraim Flashner 82f09c0e8e
gnu: go-github-com-aki237-nscjar: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-aki237-nscjar)[source]: Declare
a source file-name.
2018-03-04 12:38:51 +02:00
Efraim Flashner 6de107b0c9
gnu: go-github-com-davidjpeacock-cli: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-davidjpeacock-cli)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner fdbece74aa
gnu: go-github-com-alsm-ioprogress: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-alsm-ioprogress)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner 661ad6f0c2
gnu: freegish: Declare a source file-name.
* gnu/packages/games.scm (freegish)[source]: Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner a1dc853ef4
gnu: disorderfs: Declare a source file-name.
* gnu/packages/file-systems.scm (disorderfs)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner aeb95f1f97
gnu: emacs-sly: Declare a source file-name.
* gnu/packages/emacs.scm (emacs-sly)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner 5a6f7a6805
gnu: emacs-epl: Declare a source file-name.
* gnu/packages/emacs.scm (emacs-epl)[source]: Declare a source
file-name.
2018-03-04 12:38:47 +02:00
Efraim Flashner c553b08b49
gnu: python-apsw: Use invoke.
* gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.
2018-03-04 12:05:14 +02:00
Efraim Flashner f5c847ebd0
gnu: python-apsw: Declare a source file-name.
* gnu/packages/databases.scm (python-apsw)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner c2c04cde9b
gnu: kurly: Declare a source file-name.
* gnu/packages/curl.scm (kurly)[source]: Declare a source file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner 277be74fa7
gnu: unshield: Declare a source file-name.
* gnu/packages/compression.scm (unshield)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner eafe96ea9e
gnu: sfarkxtc: Declare a source file-name.
* gnu/packages/compression.scm (sfarkxtc)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner da49d13710
gnu: piranha: Declare a source file-name.
* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner d9a069c2d9
gnu: libdivsufsort: Declare a source file-name.
* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner 5110672474
gnu: seek: Declare a source file-name.
* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner b1d4026dfb
gnu: r-dropbead: Declare a source file-name.
* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
2018-03-04 12:05:10 +02:00
Efraim Flashner a1eb506cf3
gnu: faust@2: Declare a source file-name.
* gnu/packages/audio.scm (faust@2)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner fdf359f82b
gnu: rubberband: Declare a source file-name.
* gnu/packages/audio.scm (rubberband)[source]: Declare a source
file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 70aa07d296
gnu: qjackrcd: Declare a source file-name.
* gnu/packages/audio.scm (qjackrcd)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 6677c99a8b
gnu: lv2-devel: Declare a source file-name.
* gnu/packages/audio.scm (lv2-devel)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 35a01e67c8
gnu: lv2-mda-piano: Declare a source file-name.
* gnu/packages/audio.scm (lv2-mda-piano)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
Efraim Flashner a18ee793d7
gnu: papagayo: Declare a source file-name.
* gnu/packages/animation.scm (papagayo)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
Efraim Flashner 7fc944273d
gnu: masscan: Declare a source file-name.
* gnu/packages/admin.scm (masscan)[source]: Declare a source file-name.
2018-03-04 11:01:36 +02:00
Christopher Baines bc037c1bd1
services: redis: Add a default-value to the redis-service-type.
* gnu/packages/databases.scm (redis-service-type)[default-value]: Set
  to (redis-configuration).
2018-03-03 23:52:26 +00:00
Christopher Baines e903738f86
services: mysql: Add a default-value to the mysql-service-type.
* gnu/services/databases.scm (mysql-service-type)[default-value]: Set
  to (mysql-configuration).
2018-03-03 23:52:25 +00:00
Christopher Baines 1e6b9c6e16
services: postgresql: Add a default-value to the postgresql-service-type.
* gnu/packages/databases.scm (<postgresql-configuration>)
  [config-file,data-directory]: Add default.
  (postgresql-service-type)[default-value]:
  Set to (postgresql-configuration).
2018-03-03 23:52:23 +00:00
Danny Milosavljevic 8b2219d847
linux-modules: Add module-aliases.
* gnu/build/linux-modules.scm (module-aliases): New variable.
2018-03-03 23:40:02 +01:00
Tobias Geerinckx-Rice c94752ad22
gnu: tor: Update to 0.3.2.10 [security fixes].
This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490),
TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well.

* gnu/packages/tor.scm (tor): Update to 0.3.2.10.
2018-03-03 21:31:08 +01:00
Ricardo Wurmus 1adeef3194
gnu: Add dropseq-tools.
* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
2018-03-03 21:28:05 +01:00
Ricardo Wurmus 72299db9fe
gnu: Add java-picard-2.10.3.
* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
2018-03-03 21:28:02 +01:00
Ricardo Wurmus 719fa958f3
gnu: Add java-htsjdk-2.10.1.
* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
2018-03-03 21:27:59 +01:00
Ricardo Wurmus 9a599c17b7
gnu: Add java-htsjdk-latest.
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
2018-03-03 21:27:57 +01:00
Ricardo Wurmus 9ac7db1830
gnu: Add java-biojava-alignment-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
2018-03-03 21:27:56 +01:00
Ricardo Wurmus 5528f9e8f0
gnu: Add java-biojava-phylo-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
2018-03-03 21:27:53 +01:00
Ricardo Wurmus e44da58c16
gnu: Add java-biojava-core-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
2018-03-03 21:27:51 +01:00
Ricardo Wurmus 22c09c335b
gnu: Add java-biojava-alignment.
* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
2018-03-03 21:27:48 +01:00
Ricardo Wurmus b28c803708
gnu: Add java-biojava-phylo.
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
2018-03-03 21:27:46 +01:00
Ricardo Wurmus 10645b9212
gnu: Add java-forester-1.005.
* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
2018-03-03 21:27:44 +01:00
Ricardo Wurmus f09d16e594
gnu: Add java-forester.
* gnu/packages/bioinformatics.scm (java-forester): New variable.
2018-03-03 21:27:41 +01:00
Ricardo Wurmus 93abc975fe
gnu: Add java-openchart2.
* gnu/packages/java.scm (java-openchart2): New variable.
2018-03-03 21:27:39 +01:00
Ricardo Wurmus 5fef15e506
gnu: Add java-biojava-core.
* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
2018-03-03 21:27:36 +01:00
Ricardo Wurmus dbb3581383
gnu: Add java-jdistlib.
* gnu/packages/statistics.scm (java-jdistlib): New variable.
2018-03-03 21:27:33 +01:00
Ricardo Wurmus 4e92911c82
gnu: Add java-jtransforms.
* gnu/packages/algebra.scm (java-jtransforms): New variable.
2018-03-03 21:27:30 +01:00
Ricardo Wurmus 24074b0bdd
gnu: Add java-jlargearrays.
* gnu/packages/algebra.scm (java-jlargearrays): New variable.
2018-03-03 21:27:27 +01:00
Ricardo Wurmus c8d996080e
gnu: Add java-la4j.
* gnu/packages/algebra.scm (java-la4j): New variable.
2018-03-03 21:27:21 +01:00
Ricardo Wurmus bd975831c6
gnu: Add fastqc.
* gnu/packages/bioinformatics.scm (fastqc): New variable.
2018-03-03 21:21:48 +01:00
Ricardo Wurmus 2f0d041816
gnu: Add java-cisd-jhdf5.
* gnu/packages/java.scm (java-cisd-jhdf5): New variable.
2018-03-03 21:21:48 +01:00
Ricardo Wurmus 04ddca26e6
gnu: Add java-cisd-args4j.
* gnu/packages/java.scm (java-cisd-args4j): New variable.
2018-03-03 21:21:47 +01:00
Ricardo Wurmus 30d554732a
gnu: Add java-cisd-base.
* gnu/packages/java.scm (java-cisd-base): New variable.
2018-03-03 21:21:47 +01:00
Ricardo Wurmus f9e0fcb28f
gnu: Add texlive-fonts-iwona.
* gnu/packages/tex.scm (texlive-fonts-iwona): New variable.
2018-03-03 21:21:47 +01:00
Clément Lassieur bdcf0e6fd4
services: messaging: Prosody config supports file-like objects.
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/configuration.scm (serialize-configuration,
serialize-maybe-stem, serialize-package): Return strings or string-valued
gexps (these procedures were only used for their side-effects).
* gnu/services/messaging.scm (serialize-field, serialize-field-list,
enclose-quotes, serialize-raw-content, serialize-ssl-configuration,
serialize-virtualhost-configuration-list,
serialize-int-component-configuration-list,
serialize-ext-component-configuration-list,
serialize-virtualhost-configuration, serialize-int-component-configuration,
serialize-ext-component-configuration, serialize-prosody-configuration):
Return strings or string-valued gexps and stop printing.
(prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with
MIXED-TEXT-FILE instead of using its output with PLAIN-FILE.
(serialize-non-negative-integer, serialize-non-negative-integer-list): Convert
numbers to strings.
(file-object?, serialize-file-object, file-object-list?,
serialize-file-object-list): New procedures.
(ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths,
groups-file]: Replace FILE-NAME with FILE-OBJECT.
* guix/gexp.scm (file-like?): New exported procedure.
2018-03-03 18:21:52 +01:00
Nicolas Goaziou fb547c3429
gnu: dictionaries: Add copyright line.
* gnu/packages/dictionaries.scm: Add copyright line.
2018-03-03 14:23:17 +01:00
Nicolas Goaziou 5e332c57d1
gnu: wireshark: Update to 2.4.5.
* gnu/packages/networking.scm (wireshark): Update to 2.4.5.
2018-03-03 14:21:20 +01:00
Nicolas Goaziou 0645da3fe3
gnu: grammalecte: Update to 0.6.2.
* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2.
[arguments]: Remove.
2018-03-03 14:06:43 +01:00
Christopher Baines 62b138caf5
gnu: Add ruby-iruby.
* gnu/packages/ruby.scm (ruby-iruby): New variable.
2018-03-03 12:51:27 +00:00
Christopher Baines 8279b1d3b1
gnu: Add ruby-mimemagic.
* gnu/packages/ruby.scm (ruby-mimemagic): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines b03eb6acb4
gnu: Add ruby-data_uri.
* gnu/packages/ruby.scm (ruby-data_uri): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines d0afff263c
gnu: Add ruby-cztop.
* gnu/packages/ruby.scm (ruby-cztop): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines fe5dd5f446
gnu: Add ruby-czmq-ffi-gen.
* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines afdb437c82
gnu: Add ruby-bond.
* gnu/packages/ruby.scm (ruby-bond): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines a8d2bf3cab
gnu: Add ruby-bacon-bits.
* gnu/packages/ruby.scm (ruby-bacon-bits): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines cf646acf96
gnu: Add ruby-mocha-on-bacon.
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
2018-03-03 12:51:25 +00:00
Christopher Baines 433dc74611
gnu: networking: Add czmq.
* gnu/packages/networking.scm (czmq): New variable.
2018-03-03 12:51:23 +00:00