df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
d58faa7f44
gnu: r-rann: Update to 2.5.1.
...
* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
a8c2706de2
gnu: r-statmod: Update to 1.4.30.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
80d1185076
gnu: r-gdata: Update to 2.18.0.
...
* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
1c576cbadb
gnu: r-irlba: Update to 2.2.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
81c057ced9
gnu: r-sparsem: Update to 1.77.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
fe9917284f
gnu: r-xml: Update to 3.98-1.9.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
1c41d51743
gnu: r-plotrix: Update to 3.6-5.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
76040b8561
gnu: r-readr: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
d8048a1212
gnu: r-withr: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
f212bf84ab
gnu: r-git2r: Update to 0.19.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
63f934e672
gnu: r-backports: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
c832d326a1
gnu: r-formula: Update to 1.2-2.
...
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
f05c6275b7
gnu: r-r6: Update to 2.2.2.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
b07c8c0156
gnu: r-knitr: Update to 1.16.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
6dc86e8dfc
gnu: r-formatr: Update to 1.5.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
12cd797541
gnu: r-evaluate: Update to 0.10.1.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
d5ce380711
gnu: r-dbi: Update to 0.7.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
831858a7d3
gnu: r-bit64: Update to 0.9-7.
...
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00
dbeda1b4a0
gnu: r-matrix: Update to 1.2-10.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03 17:53:46 +02:00
74b037df64
gnu: r-foreign: Update to 0.8-69.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03 17:53:46 +02:00
af1eeabe89
gnu: r-boot: Update to 1.3-20.
...
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03 17:53:46 +02:00
e584b9fc1b
gnu: r-curl: Update to 2.8.1.
...
* gnu/packages/web.scm (r-curl): Update to 2.8.1.
2017-08-03 17:53:45 +02:00
53deffe5e9
gnu: r-htmlwidgets: Update to 0.9.
...
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.9.
2017-08-03 17:53:45 +02:00
850151058d
gnu: r-htmltools: Update to 0.3.6.
...
* gnu/packages/web.scm (r-htmltools): Update to 0.3.6.
2017-08-03 17:53:45 +02:00
a1e54db2ac
gnu: r-servr: Update to 0.6.
...
* gnu/packages/web.scm (r-servr): Update to 0.6.
2017-08-03 17:53:45 +02:00
9fe794f0f7
gnu: r-jsonlite: Update to 1.5.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.5.
2017-08-03 17:53:45 +02:00
2d81bc16a9
gnu: r-httpuv: Update to 1.3.5.
...
* gnu/packages/web.scm (r-httpuv): Update to 1.3.5.
2017-08-03 17:53:44 +02:00
0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1.
...
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03 17:53:44 +02:00
c628b8418a
gnu: r-ranger: Update to 0.8.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03 17:53:44 +02:00
cc9a778ecc
gnu: r-hmisc: Update to 4.0-3.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
2017-08-03 17:53:43 +02:00
f9b3760636
gnu: r-plotly: Update to 4.7.1.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
2017-08-03 17:53:43 +02:00
d59050823e
gnu: r-igraph: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03 17:53:43 +02:00
7b3688150b
gnu: r-purrr: Update to 0.2.2.2.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03 17:53:43 +02:00
5fc74f24bf
gnu: r-devtools: Update to 1.13.3.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
2017-08-03 17:53:43 +02:00
aad948a0ea
gnu: r-tibble: Update to 1.3.3.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
4bb0b4cc0a
gnu: Add r-bindrcpp.
...
* gnu/packages/cran.scm (r-bindrcpp): New variable.
2017-08-03 17:53:42 +02:00
eed58a0886
gnu: Add r-bindr.
...
* gnu/packages/cran.scm (r-bindr): New variable.
2017-08-03 17:53:42 +02:00
a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00
736332c79c
gnu: r-rcpp: Update to 0.12.12.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03 17:53:42 +02:00
847b457253
gnu: r-plogr: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03 17:53:41 +02:00
5bee6bf409
gnu: Add r-glue.
...
* gnu/packages/cran.scm (r-glue): New variable.
2017-08-03 17:53:41 +02:00
dd4b7476ec
gnu: Add grub-hybrid.
...
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
2017-08-03 16:35:34 +02:00
75e6639f36
gnu: htseq: Use PyPI URI.
...
This is a follow-up to 92971d68ac
2017-08-03 21:08:13 +10:00
92971d68ac
gnu: htseq: Update to 0.9.1.
...
* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1.
[arguments]: Use python-3 by removing field.
[native-inputs]: Add 'python-cython'.
[propagated-inputs]: Use python3 numpy package.
[inputs]: Use python3 pysam package. Add 'python-matplotlib'.
(python2-htseq): New variable.
(clipper)[inputs]: Use it.
2017-08-03 21:02:30 +10:00
a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
...
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
5638d71502
gnu: openscenegraph: Add 'Release' configure flag.
...
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
2017-08-03 10:35:31 +03:00
68a29ab8d0
gnu: Add LeoCAD.
...
* gnu/packages/lego.scm (leocad): New variable.
2017-08-03 00:33:02 -05:00
5d8312f1c6
gnu: youtube-dl: Update to 2017.07.30.1.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
2017-08-03 05:31:24 +02:00
6862c72373
gnu: tor: Update to 0.3.0.10.
...
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
2017-08-03 01:56:22 +02:00
edd08fb7ac
gnu: glibc@2.22: Fix security issues.
...
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.
* gnu/packages/base.scm (glibc@2.22 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:35 +03:00
a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.
...
* gnu/packages/base.scm (glibc@2.23 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02 21:51:33 +03:00
575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180.
...
* gnu/packages/base.scm (glibc@2.24 )[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:31 +03:00
2c5cf84430
gnu: python2-conda: Fix build by building with enum34.
...
* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'.
[native-inputs]: Add python2-enum34.
2017-08-02 14:39:33 -04:00
9ef5940ce4
gnu: calibre: Add python2-msgpack as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack.
2017-08-02 20:20:12 +03:00
721d7a6912
gnu: gcc@4.7: Don't built on aarch64.
...
* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]:
New field.
2017-08-02 19:14:26 +03:00
696f1d0fb1
gnu: libpng-apng: Be sure to apply the APNG patch.
...
* gnu/packages/image.scm (libpng-apng)[arguments]: Check the return status of
the patching procedures.
2017-08-02 11:17:57 -04:00
e0958c2df8
gnu: libpng-apng: Update to 1.6.28.
...
Fixes <https://bugs.gnu.org/27556 >.
* gnu/packages/image.scm (libpng-apng): Update to 1.6.28.
Remove inherit of 'libpng'.
[version]: Use own version, remove 'package-version libpng'.
[source]: Don't inherit the source of libpng.
[arguments]: Update hash of libpng-apng source.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-02 11:10:31 -04:00
33485fa913
gnu: eyed3: Update to 0.8, build with python3.
...
* gnu/packages/mp3.scm (eyed3): [source] Update to 0.8.
[arguments]: Disable tests; don't use python-2.
[propagated-inputs]: Add python-six and python-grako.
[native-inputs]: Remove.
2017-08-02 14:08:33 +02:00
a70b03d413
gnu: Add python-grako
...
* gnu/packages/python.scm (python-grako): New variable.
2017-08-02 14:08:33 +02:00
0abf526420
gnu: hdf4: Update to 4.12.13.
...
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
ced2d2b7ca
gnu: libvirt: Update to 3.6.0.
...
* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0.
2017-08-02 07:15:21 +02:00
2e508b6dc0
gnu: libvirt: Use HTTPS.
...
* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS.
2017-08-02 07:15:21 +02:00
2f06dc0435
gnu: Add r-rlang.
...
* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02 00:57:39 +02:00
f1915a5dd0
gnu: r-deseq2: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1.
2017-08-02 00:33:23 +02:00
fd215c2978
gnu: r-annotationforge: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
2017-08-02 00:33:07 +02:00
bd4a0bab5f
gnu: r-category: Update to 2.42.1.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
2017-08-02 00:32:46 +02:00
0ff478344b
gnu: r-biocstyle: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
2017-08-02 00:32:31 +02:00
9c4348d8c4
gnu: r-dnacopy: Update to 1.50.1.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
2017-08-02 00:32:11 +02:00
3ec25eb2a8
gnu: r-iranges: Update to 2.10.2.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
2017-08-02 00:31:46 +02:00
6252dd0f15
gnu: r-genomeinfodb: Update to 1.12.2.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
2017-08-02 00:31:28 +02:00
48f5d283b2
gnu: r-variantannotation: Update to 1.22.3.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
2017-08-02 00:31:08 +02:00
1b4738e23c
gnu: r-limma: Update to 3.32.5.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
2017-08-02 00:30:49 +02:00
1898a7832f
gnu: r-biobase: Update to 2.36.2.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
2017-08-02 00:30:27 +02:00
62eb93a7d0
gnu: r-annotationdbi: Update to 1.38.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
2017-08-02 00:28:32 +02:00
0c6494a1db
gnu: r-biomart: Update to 2.32.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
2017-08-02 00:28:16 +02:00
1ff74d074e
gnu: r-biocparallel: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
2017-08-02 00:27:57 +02:00
5077bc3e2e
gnu: r-biostrings: Update to 2.44.2.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
2017-08-02 00:27:35 +02:00
adf5d0a0bc
gnu: r-delayedarray: Update to 0.2.7.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
2017-08-02 00:27:16 +02:00
f41150f13d
gnu: r-summarizedexperiment: Update to 1.6.3.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
2017-08-02 00:26:55 +02:00
26760c80cd
gnu: r-genomicalignments: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
2017-08-02 00:26:33 +02:00
15afa9bf8f
gnu: r-rtracklayer: Update to 1.36.4.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
2017-08-02 00:26:00 +02:00
8cfaa9ab4e
gnu: r-genomicfeatures: Update to 1.28.4.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
2017-08-02 00:25:26 +02:00
9eb2714625
gnu: r-copywriter: Update to 2.8.1.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
2017-08-02 00:25:00 +02:00
bfa0d1e773
gnu: r-sva: Update to 3.24.4.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
2017-08-02 00:24:27 +02:00
8060a61798
gnu: r-rsqlite: Update to 2.0.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02 00:23:16 +02:00
796237a9a4
gnu: Add r-blob.
...
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02 00:22:33 +02:00
aa184803f8
gnu: Add r-pkgconfig.
...
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-02 00:21:40 +02:00
fc8f0631b4
gnu: re2: Update to 2017-08-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
2017-08-01 23:37:20 +02:00
Ricardo Wurmus