* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch. Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
This is a followup to c799eb2eb8.
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/libusb.scm (libusb-0.1): New variable.
* gnu/packages/patches/libusb-0.1-disable-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
Reported by Eric Bavier.
* gnu/local.mk (dist_patch_DATA): Add
gnu/packages/patches/hmmer-remove-cpu-specificity.patch,
gnu/packages/patches/jacal-fix-texinfo.patch,
gnu/packages/patches/python-pbr-fix-man-page-support.patch and
gnu/packages/patches/vsearch-unbundle-cityhash.patch.
* gnu/packages/make-bootstrap.scm (%guile-static): Replace GUILE-2.0
with GUILE-2.2. Use "guile-2.2-default-utf8.patch" instead of
"guile-default-utf8.patch".
* gnu/packages/patches/guile-2.2-default-utf8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/qemu-CVE-2017-11334.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
* gnu/packages/patches/chicken-CVE-2017-11343.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
* gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (sooperlooper): New variable.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (evince)[source]: Use it.
* gnu/packages/patches/spice-CVE-2017-7506.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (spice)[source]: Use it.
* gnu/packages/patches/ncurses-CVE-2017-10684-10685.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ncurses.scm (ncurses)[replacement]: New field.
(ncurses/fixed): New variable.
* gnu/packages/patches/poppler-fix-crash-with-broken-documents.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler/fixed)[source]: Add the patch.
* gnu/packages/patches/ghostscript-no-header-creationdate.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript): Use it.
* gnu/packages/patches/ghostscript-no-header-uuid.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript): Use it.
* gnu/packages/patches/ghostscript-no-header-id.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/ghostscript.scm (ghostscript): Use it.
Fixes <https://bugs.gnu.org/27593>.
* gnu/packages/patches/groff-source-date-epoch.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/groff.scm (groff)[source]: Add it.
* gnu/packages/patches/dblatex-remove-multirow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/docbook.scm (dblatex)[source]: Use patch.
[inputs]: Replace "texlive" with a texlive-union.
This is a followup to commit 95bbaa02aa.
See <https://bugs.gnu.org/27621> for more information.
Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not
possible to graft the newer version in place of the older one.
This change leaves CVE-2017-9775 unfixed for now.
* gnu/packages/patches/poppler-CVE-2017-9776.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler-0.56.0): Replace with ...
(poppler/fixed): ... new variable.
(poppler)[replacement]: Replaced with poppler/fixed.
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl)[source]: Use it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.1.0.
[source]: Remove patch.
[native-inputs]: Add PYTHON-PRETEND.
[arguments]<#:phases>: Disable the network test here instead of via a patch.
Also disable one new test.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/shishi-fix-libgcrypt-detection.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kerberos.scm (shishi)[source]: Use it.
[inputs]: Use libgcrypt instead of libgcrypt-1.5.
[arguments]: Set 'ac_cv_libgcrypt=yes' in #:configure-flags.
* gnu/packages/gnupg.scm (libgcrypt-1.5): Remove variable.
* gnu/packages/patches/intltool-perl-compatibility.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (intltool)[source]: Use it.
See <http://lists.gnu.org/archive/html/bug-guix/2017-05/msg00015.html> for the
rationale.
* gnu/packages/patches/ansible-wrap-program-hack.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (ansible)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Leo Famulari