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783 Commits

Author SHA1 Message Date
Ricardo Wurmus d4b83651d1
gnu: Add r-aroma-light. 
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
 2017-05-22 18:54:58 +02:00
Ben Woodcroft 74297231be
gnu: fraggenescan: Update to 1.30. 
* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30.
[arguments]: Update patching of paths, install procedure.  Add new test
case.
 2017-05-22 11:44:20 +01:00
Ben Woodcroft 7569613076
gnu: roary: Update to 3.8.2. 
* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
 2017-05-22 11:44:20 +01:00
Ben Woodcroft 3cbfc149c3
gnu: taxtastic: Update to 0.6.4. 
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4.
[source]: Use PyPI URI.
 2017-05-22 11:44:19 +01:00
Roel Janssen b458413721
gnu: r-mutationalpatterns: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
 2017-05-22 09:44:08 +02:00
Ben Woodcroft ef81341f0e
gnu: diamond: Update to 0.9.0. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0.
[license]: Change to AGPL3+.
 2017-05-21 16:08:03 +01:00
Ben Woodcroft 88682c9a72
gnu: fasttree: Update to 2.1.10. 
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
 2017-05-21 15:42:08 +01:00
Ben Woodcroft abc08cbae6
gnu: python-biom-format: Update to 2.1.6. 
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
 2017-05-21 15:42:08 +01:00
Pjotr Prins 2b18ad054c
gnu: Add gemma. 
* gnu/packages/bioinformatics.scm (gemma): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-18 14:22:03 +02:00
Ludovic Courtès 2252f087d4
gnu: guile-json: Rename "guile2.2-json" to "guile-json". 
* gnu/packages/guile.scm (guile-json)[native-inputs]: Change GUILE-2.0
to GUILE-2.2.
(guile2.2-json): Define using 'deprecated-package'.
(guile2.0-json): New variable.
* gnu/packages/bioinformatics.scm (rcas-web)[inputs]: Update accordingly.
* gnu/packages/ci.scm (cuirass)[inputs]: Likewise.
* gnu/packages/package-management.scm (guix)[inputs]: Likewise.
 2017-05-13 22:25:22 +02:00
Ben Woodcroft c033f5d6b5
gnu: Add pplacer. 
* gnu/packages/bioinformatics.scm (pplacer, pplacer-scripts): New
variables.
 2017-05-10 22:13:55 +02:00
Ben Woodcroft ad0ae297d4
gnu: Add taxtastic. 
* gnu/packages/bioinformatics.scm (taxtastic): New variable.
 2017-05-10 22:13:55 +02:00
Petter 2f3108ad03
gnu: Avoid circular dependencies by Perl license. 
* guix/licenses.scm (perl-license): New variable.
* gnu/packages/bioinformatics.scm: Change (package-license perl) to perl-license.
* gnu/packages/compression.scm: Same.
* gnu/packages/databases.scm: Same.
* gnu/packages/gd.scm: Same.
* gnu/packages/language.scm: Same.
* gnu/packages/libevent.scm: Same.
* gnu/packages/mail.scm: Same.
* gnu/packages/messaging.scm: Same.
* gnu/packages/ncurses.scm: Same.
* gnu/packages/networking.scm: Same.
* gnu/packages/photo.scm: Same.
* gnu/packages/tcl.scm: Same.
* gnu/packages/tex.scm: Same.
* gnu/packages/tls.scm: Same.
* gnu/packages/web.scm: Same.
* gnu/packages/wm.scm: Same.
* gnu/packages/xml.scm: Same.
* gnu/packages/xorg.scm: Same.
* gnu/packages/zip.scm: Same.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-02 23:41:14 +02:00
Roel Janssen f432254237
gnu: vcftools: Update to 0.1.15. 
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.15.
 2017-05-01 16:18:39 +02:00
Efraim Flashner 90f83099e8
gnu: r-genomeinfodbdata: Fix source url. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata)[source]: Use
source uri and not bioconductor-uri shortener.
 2017-04-29 22:53:43 +03:00
Roel Janssen 524bfe2dbf
gnu: r-msnid: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0.
 2017-04-28 11:05:42 +02:00
Roel Janssen 82359c72cb
gnu: r-msnbase: Update to 2.2.0. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0.
 2017-04-28 11:05:41 +02:00
Roel Janssen 5bfa6e090d
gnu: r-pcamethods: Update to 1.68.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.
 2017-04-28 11:05:40 +02:00
Roel Janssen 63bf2102cd
gnu: r-mzid: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.
 2017-04-28 11:05:38 +02:00
Roel Janssen 60c08b2ff4
gnu: r-vsn: Update to 3.44.0. 
* gnu/packages/bioinformatics.scm (r-vsn):
[source]: Update to 3.44.0,
[propagated-inputs]: Add r-hexbin.
 2017-04-28 11:05:37 +02:00
Roel Janssen bd3cc4cc52
gnu: r-affy: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.
 2017-04-28 11:05:37 +02:00
Roel Janssen 71abcc4cbf
gnu: r-affyio: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.
 2017-04-28 11:05:36 +02:00
Roel Janssen e440ad6d4f
gnu: r-mzr: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0.
 2017-04-28 11:05:35 +02:00
Roel Janssen 5b1337cc60
gnu: r-protgenerics: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0.
 2017-04-28 11:05:33 +02:00
Roel Janssen 1d09d017db
gnu: r-sva: Update to 3.24.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0.
 2017-04-28 11:05:20 +02:00
Roel Janssen d52d2d623a
gnu: r-copywriter: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0.
 2017-04-28 11:05:19 +02:00
Roel Janssen 7d72f2a803
gnu: r-chipseq: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0.
 2017-04-28 11:05:18 +02:00
Roel Janssen 04049a5f2c
gnu: r-rhdf5: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0.
 2017-04-28 11:05:18 +02:00
Roel Janssen ff58a1af98
gnu: r-tximport: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0.
 2017-04-28 11:05:16 +02:00
Roel Janssen cf4ac4e465
gnu: r-mutationalpatterns: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns):
[source]: Update to 1.2.0,
[propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5,
  r-bsgenome-hsapiens-ucsc-hg19.
 2017-04-28 11:05:13 +02:00
Roel Janssen ccd2aade98
gnu: r-bamsignals: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0.
 2017-04-28 11:05:12 +02:00
Roel Janssen 37631ddc28
gnu: r-rhtslib: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0.
 2017-04-28 11:05:11 +02:00
Roel Janssen 8444f6067a
gnu: r-zlibbioc: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0.
 2017-04-28 11:05:10 +02:00
Roel Janssen a7b90ea990
gnu: r-motifrg: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.20.0.
 2017-04-28 11:05:09 +02:00
Roel Janssen 0fce7d9be5
gnu: r-seqlogo: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.42.0.
 2017-04-28 11:05:08 +02:00
Roel Janssen 3ae82c8dfe
gnu: r-genomation: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.8.0.
 2017-04-28 11:05:07 +02:00
Roel Janssen 08b9224d2d
gnu: r-seqpattern: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.8.0.
 2017-04-28 11:05:06 +02:00
Roel Janssen 5999359f56
gnu: r-impute: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.50.0.
 2017-04-28 11:05:06 +02:00
Roel Janssen c54a702a28
gnu: r-bsgenome: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.44.0.
 2017-04-28 11:05:04 +02:00
Roel Janssen 6e70b6d63c
gnu: r-topgo: Update to 2.28.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.28.0.
 2017-04-28 11:05:03 +02:00
Roel Janssen 56373771b3
gnu: r-graph: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.54.0.
 2017-04-28 11:05:02 +02:00
Roel Janssen 5d0301a339
gnu: r-genomicfeatures: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.0.
 2017-04-28 11:05:01 +02:00
Roel Janssen 2ea7155b04
gnu: r-rtracklayer: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.0.
 2017-04-28 11:05:00 +02:00
Roel Janssen 5f16d1e47d
gnu: r-genomicalignments: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.0.
 2017-04-28 11:04:59 +02:00
Roel Janssen d006ee31af
gnu: r-summarizedexperiment: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment):
[source]: Update to 1.6.0,
[propagated-inputs]: Add r-delayedarray.
 2017-04-28 11:04:58 +02:00
Roel Janssen 6bf5543be8
gnu: r-rsamtools: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.28.0.
 2017-04-28 11:04:57 +02:00
Roel Janssen 3ed41af6b5
gnu: r-biostrings: Update to 2.44.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.0.
 2017-04-28 11:04:56 +02:00
Roel Janssen 502da6ffc7
gnu: r-biocparallel: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.0.
 2017-04-28 11:04:55 +02:00
Roel Janssen 78e7a589c9
gnu: r-biomart: Update to 2.32.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.0.
 2017-04-28 11:04:47 +02:00
Roel Janssen aafaab22d3
gnu: r-annotationdbi: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.0.
 2017-04-28 11:04:46 +02:00
Roel Janssen b2fff403c8
gnu: r-biobase: Update to 2.36.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.0.
 2017-04-28 11:04:44 +02:00
Roel Janssen 1859712bef
gnu: r-genomicranges: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.0.
 2017-04-28 11:04:42 +02:00
Roel Janssen 17a02f5149
gnu: r-xvector: Update to 0.16.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.16.0.
 2017-04-28 11:04:42 +02:00
Roel Janssen abf5a14e11
gnu: r-limma: Update to 3.32.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.0.
 2017-04-28 11:04:41 +02:00
Roel Janssen d2d7af9832
gnu: r-variantannotation: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.0.
 2017-04-28 11:04:40 +02:00
Roel Janssen 00ffd55fa1
gnu: r-edger: Update to 3.18.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.18.0.
 2017-04-28 11:04:39 +02:00
Roel Janssen 38b99ccc57
gnu: r-genomeinfodb: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): [source] Update to 1.12.0,
[propagated-inputs]: Add r-genomeinfodbdata.
 2017-04-28 11:04:37 +02:00
Roel Janssen 7d9ab5d920
gnu: r-iranges: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.0.
 2017-04-28 11:04:36 +02:00
Roel Janssen f1f380185b
gnu: r-s4vectors: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.0.
 2017-04-28 11:04:34 +02:00
Roel Janssen 9b02d49cb0
gnu: r-dnacopy: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.0.
 2017-04-28 11:04:33 +02:00
Roel Janssen 2e11beec48
gnu: r-bioccheck: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0.
 2017-04-28 11:04:32 +02:00
Roel Janssen 3bef24c968
gnu: r-biocstyle: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0.
[propagated-inputs]: Add r-bookdown, r-knitr, r-rmarkdown, r-yaml.
 2017-04-28 11:04:31 +02:00
Roel Janssen 68eac34974
gnu: r-biocviews: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0.
 2017-04-28 11:04:30 +02:00
Roel Janssen 3bef15286a
gnu: r-biocinstaller: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0.
 2017-04-28 11:04:28 +02:00
Roel Janssen 28a5b3f2c6
gnu: r-biocgenerics: Update to 0.22.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0.
 2017-04-28 11:04:26 +02:00
Roel Janssen 795a604526
gnu: r-grohmm: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.
 2017-04-28 11:04:25 +02:00
Roel Janssen 026dc7e4fc
gnu: r-systempiper: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.
 2017-04-28 11:04:24 +02:00
Roel Janssen 34c276f761
gnu: r-shortread: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.
 2017-04-28 11:04:22 +02:00
Roel Janssen 9511773423
gnu: r-gostats: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.
 2017-04-28 11:04:21 +02:00
Roel Janssen ca0289aee7
gnu: r-category: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.
 2017-04-28 11:04:20 +02:00
Roel Janssen c584a07ffd
gnu: r-gseabase: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.
 2017-04-28 11:04:19 +02:00
Roel Janssen 8ab6f241ea
gnu: r-rbgl: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0.
 2017-04-28 11:04:16 +02:00
Roel Janssen 46972a4427
gnu: r-annotationforge: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.
 2017-04-28 11:04:12 +02:00
Roel Janssen 3ae74e451c
gnu: r-deseq2: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.
 2017-04-28 11:04:09 +02:00
Roel Janssen b5bc3a3963
gnu: r-genefilter: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.
 2017-04-28 11:04:06 +02:00
Roel Janssen 97a50e4f34
gnu: r-geneplotter: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.
 2017-04-28 11:03:59 +02:00
Roel Janssen dbab99b6d2
gnu: r-annotate: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.
 2017-04-28 11:03:47 +02:00
Roel Janssen ffef27f3d2
gnu: Add r-genomeinfodbdata. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.
 2017-04-28 10:17:06 +02:00
Roel Janssen 71e34e6b5b
gnu: Add r-delayedarray. 
* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
 2017-04-28 10:15:12 +02:00
Roel Janssen 2abfc5b827
gnu: Add r-bookdown. 
* gnu/packages/bioinformatics.scm (r-bookdown): New variable.
 2017-04-28 10:09:31 +02:00
Ricardo Wurmus 31c374e081
gnu: python-pysam: Disable tests. 
* gnu/packages/bioinformatics.scm (python-pysam): Disable tests.
 2017-04-25 14:05:59 +02:00
Ricardo Wurmus b2955e224e
gnu: python-pysam: Fix tests, again. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nosetests
explicitly with a single process.
 2017-04-24 18:46:28 +02:00
Efraim Flashner c136240efc
gnu: diamond: Enable building on all architectures. 
* gnu/packages/bioinformatics.scm (diamond)[supported-systems]: Remove
field.
 2017-04-24 19:30:10 +03:00
Ricardo Wurmus 1a84edeb0b
gnu: r-seqminer: Update to 5.9. 
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 5.9.
 2017-04-22 23:30:31 +02:00
Ben Woodcroft a7d12a9e71
gnu: proteinortho: Update to 5.16. 
* gnu/packages/bioinformatics.scm (proteinortho): Update to 5.16.
 2017-04-21 23:03:56 +10:00
Ben Woodcroft 37199768e8
gnu: diamond: Update to 0.8.38. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.38.
 2017-04-21 23:03:55 +10:00
Tobias Geerinckx-Rice d1e4ad1b02
gnu: Fix typos in descriptions. 
* gnu/packages/admin.scm (di)[description]: Likewise.
* gnu/packages/bioinformatics.scm (r-annotate)[description]: Likewise.
* gnu/packages/datastructures.scm (sparsehash)[description]: Likewise.
* gnu/packages/dns.scm (knot)[description]: Likewise.
* gnu/packages/emacs.scm (emacs-idle-highlight)[synopsis, description]:
Likewise.
* gnu/packages/gnome.scm (libpeas)[description]: Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[description]: Likewise.
* gnu/packages/kde-frameworks.scm (kactivities)[description]: Fix typo.
* gnu/packages/libevent.scm (perl-anyevent)[description]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[description]: Likewise.
* gnu/packages/mail.scm (mlmmj)[description]: Likewise.
* gnu/packages/maths.scm (vc)[description]: Likewise.
* gnu/packages/music.scm (gx-super-fuzz-lv2)[description]: Likewise.
* gnu/packages/networking.scm (nload)[description]: Likewise.
* gnu/packages/python.scm (python-execnet)[description]: Likewise.
* gnu/packages/terminals.scm (tilda)[description]: Likewise.
* gnu/packages/python.scm (python-execnet, python-tables)
(python2-coverage-test-runner, python2-rope)[description]: Likewise.
 2017-04-17 02:04:08 +02:00
Ben Woodcroft 88eb119f95
gnu: mafft: Update to 7.310. 
* gnu/packages/bioinformatics.scm (mafft): Update to 7.310.
 2017-04-14 15:19:37 +10:00
Ben Woodcroft e9e0fab079
gnu: raxml: Update to 8.2.10. 
* gnu/packages/bioinformatics.scm (raxml): Update to 8.2.10.
 2017-04-09 21:44:14 +10:00
Ricardo Wurmus 6acdff5875
gnu: r-rsamtools: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.2.
 2017-04-09 13:34:53 +02:00
Ricardo Wurmus dc8ebe43af
gnu: r-biocparallel: Update to 1.8.2. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.2.
 2017-04-09 13:34:53 +02:00
Ricardo Wurmus 1d65b5379b
gnu: r-vegan: Update to 2.4-3. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-3.
[arguments]: Remove build phase "revert-test-deletion".
[native-inputs]: Remove "r-vegan-delete-tests-patch".
 2017-04-08 10:25:50 +02:00
Ben Woodcroft 37982693ca
gnu: vsearch: Update to 2.4.3. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.3.
 2017-04-07 21:35:07 +10:00
Ricardo Wurmus e18c731ba0
gnu: r-seqinr: Update to 3.3-6. 
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-6.
 2017-04-06 14:39:22 +02:00
Ricardo Wurmus 0685fe3c86
gnu: r-rcpparmadillo: Update to 0.7.700.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0.
[source]: Do not delete bundled armadillo sources, because upstream no longer
hosts previous versions.
[propagated-inputs]: Remove "armadillo-for-rcpparmadillo".
[arguments]: Remove because we no longer need to link with the armadillo
library.
* gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no
longer need to link with armadillo library.
 2017-04-06 14:39:22 +02:00
Ricardo Wurmus a3656b11d2
gnu: r-annotationforge: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.1.
 2017-04-06 14:39:22 +02:00
Ricardo Wurmus e0d7b31820
gnu: r-shortread: Update to 1.32.1. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.1.
 2017-04-06 14:39:21 +02:00
Ricardo Wurmus 2cea968e41
gnu: r-s4vectors: Update to 0.12.2. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.2.
 2017-04-06 14:39:21 +02:00
Ricardo Wurmus 7d05eb2dcc
gnu: r-iranges: Update to 2.8.2. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.2.
 2017-04-06 14:39:21 +02:00
Ricardo Wurmus e89cf15091
gnu: r-variantannotation: Update to 1.20.3. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.3.
 2017-04-06 14:39:21 +02:00