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1443 Commits

Author SHA1 Message Date
Julien Lepiller 1b16f1ecb1
gnu: Add python-nosexcover. 
* gnu/packages/python.scm (python-nosexcover, python2-nosexcover): New variables.
 2017-05-11 21:57:21 +02:00
Julien Lepiller d15a47911a
gnu: Add python-dirsync. 
* gnu/packages/python.scm (python-dirsync, python2-dirsync): New variables.
 2017-05-11 21:57:18 +02:00
Julien Lepiller 186d4f8d08
gnu: Add python-diff-match-patch. 
* gnu/packages/python.scm (python-diff-match-patch, python2-diff-match-patch):
New variables.
 2017-05-11 21:57:16 +02:00
Julien Lepiller 03ded2fd3b
gnu: Add python-cssmin. 
* gnu/packages/python.scm (python-cssmin, python2-cssmin): New variables.
 2017-05-11 21:57:13 +02:00
Julien Lepiller eed206cb8a
gnu: python-rq: Update to 0.7.1. 
* gnu/packages/python.scm (python-rq, python2-rq): Update to 0.7.1.
[source]: Use pypi-uri.
 2017-05-11 21:57:10 +02:00
Julien Lepiller 4c066b727c
gnu: Add python-sphinx-me. 
* gnu/packages/python.scm (python-sphinx-me, python2-sphinx-me): New variables.
 2017-05-11 21:57:08 +02:00
Julien Lepiller 709a5a9365
gnu: Add python-webassets. 
* gnu/packages/python.scm (python-webassets, python2-webassets): New variables.
 2017-05-11 21:57:05 +02:00
Julien Lepiller 75805449cf
gnu: Add python-utils. 
* gnu/packages/python.scm (python-utils, python2-utils): New variables.
 2017-05-11 21:57:02 +02:00
Julien Lepiller 2d6e56baa7
gnu: Add python-pytest-catchlog. 
* gnu/packages/python.scm (python-pytest-catchlog, python2-pytest-catchlog):
New variables.
 2017-05-11 21:56:58 +02:00
Julien Lepiller 59a972885c
gnu: Add python-pytest-warnings. 
* gnu/packages/python.scm (python-pytest-warnings, python2-pytest-warnings):
New variables.
 2017-05-11 21:56:54 +02:00
Julien Lepiller 047160f2f1
gnu: python-pytest-runner: Update to 2.11.1. 
* gnu/packages/python.scm (python-pytest-runner)
(python2-pytest-runner): Update to 2.11.1.
 2017-05-11 21:56:35 +02:00
Leo Famulari cb542830a2
gnu: python-kitchen: Update home-page URL. 
* gnu/packages/python.scm (python-kitchen, python2-kitchen)[home-page]:
Update URL.
 2017-05-10 23:37:24 -04:00
Ethan R. Jones 5ee684ff2f
gnu: python2-dogtail: Update home-page URL. 
* gnu/packages/python.scm (python2-dogtail)[home-page]: Update URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-05-10 23:37:23 -04:00
Leo Famulari 68ab3e6c9a
gnu: python-icalendar: Update to 3.11.4. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.4.
 2017-05-10 21:58:06 -04:00
Adriana Peluso f9f67fcb0f
gnu: Fix attributions for Adriano Peluso. 
* gnu/packages/emacs.scm, gnu/packages/perl.scm, gnu/packages/python.scm,
gnu/packages/xml.scm: Update copyright attributions for Adriano Peluso.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-05-07 20:17:55 -04:00
Danny Milosavljevic 7e16478f18
gnu: Add python-mwclient. 
Fixes <https://bugs.gnu.org/26744>.

* gnu/packages/python.scm (python-mwclient, python2-mwclient): New variables.
 2017-05-02 22:21:36 +02:00
Danny Milosavljevic 1aecfe176a
gnu: python-pytest-cov: Update to 2.4.0. 
Fixes <https://bugs.gnu.org/26743>.

* gnu/packages/python.scm (python-pytest-cov): Update to 2.4.0.
 2017-05-02 22:20:44 +02:00
Danny Milosavljevic 6e7302e93b
gnu: Add python-flask-oidc. 
Fixes <https://bugs.gnu.org/26731>.

* gnu/packages/python.scm (python-flask-oidc): New variable.
 2017-05-02 09:27:18 +02:00
Danny Milosavljevic f3f8d159c3
gnu: Add python-oauth2client. 
* gnu/packages/python.scm (python-oauth2client): New variable.
 2017-05-02 09:27:17 +02:00
Christopher Baines 6fdeb324a0
gnu: python-tornado: Update to 4.5.1. 
* gnu/packages/python.scm (python-tornado): Update to 4.5.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-01 23:59:22 +02:00
Christopher Baines e537c917e8
gnu: Add python-sockjs-tornado. 
* gnu/packages/python.scm (python-sockjs-tornado): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-01 23:59:15 +02:00
Maxim Cournoyer e93793059d
gnu: python2-urwid: Disable vterm tests. 
* gnu/packages/python.scm (python2-urwid)['delete-test_vterm]: Add phase to
delete problematic test modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-01 17:28:20 +02:00
Leo Famulari 4d31d14397
gnu: python-llfuse: Update to 1.2. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.2.
 2017-04-30 17:15:37 -04:00
Christopher Allan Webber b9ce9eca23
python-sphinxcontrib-programoutput: Update to 0.10. 
* gnu/packages/python.scm (python-sphinxcontrib-programoutput): Update to 0.10.
 2017-04-29 18:50:53 -05:00
Danny Milosavljevic 0660d3276c
gnu: python-openid: Fix package. 
Fixes <https://bugs.gnu.org/26692>.

* gnu/packages/python.scm (python-openid)[arguments]: Replace 'check phase.
[propagated-inputs]: Add python-defusedxml.
[native-inputs]: Add python-psycopg2, python-django.
 2017-04-29 10:52:55 +02:00
David Thompson 0cb9fba3dc
gnu: awscli: Add python-pyyaml input. 
Without this input, 'aws ec2 import-key-pair' doesn't work.

* gnu/packages/python.scm (awscli)[propagated-inputs]: Add python-pyyaml.
 2017-04-28 09:20:37 -04:00
Marius Bakke 833df99d62
gnu: python-pyopenssl: Update to 17.0.0. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.0.0.
[native-inputs]: Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Adjust.
 2017-04-21 15:36:36 +02:00
Ben Sturmfels 16fe516e78
gnu: Add python-fudge. 
* gnu/packages/python.scm (python-fudge): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-04-18 19:16:45 +02:00
Tobias Geerinckx-Rice d1e4ad1b02
gnu: Fix typos in descriptions. 
* gnu/packages/admin.scm (di)[description]: Likewise.
* gnu/packages/bioinformatics.scm (r-annotate)[description]: Likewise.
* gnu/packages/datastructures.scm (sparsehash)[description]: Likewise.
* gnu/packages/dns.scm (knot)[description]: Likewise.
* gnu/packages/emacs.scm (emacs-idle-highlight)[synopsis, description]:
Likewise.
* gnu/packages/gnome.scm (libpeas)[description]: Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[description]: Likewise.
* gnu/packages/kde-frameworks.scm (kactivities)[description]: Fix typo.
* gnu/packages/libevent.scm (perl-anyevent)[description]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[description]: Likewise.
* gnu/packages/mail.scm (mlmmj)[description]: Likewise.
* gnu/packages/maths.scm (vc)[description]: Likewise.
* gnu/packages/music.scm (gx-super-fuzz-lv2)[description]: Likewise.
* gnu/packages/networking.scm (nload)[description]: Likewise.
* gnu/packages/python.scm (python-execnet)[description]: Likewise.
* gnu/packages/terminals.scm (tilda)[description]: Likewise.
* gnu/packages/python.scm (python-execnet, python-tables)
(python2-coverage-test-runner, python2-rope)[description]: Likewise.
 2017-04-17 02:04:08 +02:00
Ben Sturmfels c1aba1a7c8
gnu: python-paramiko: Update to 1.17.4. 
* gnu/packages/python.scm (python-paramiko): Update to 1.17.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-04-11 18:03:35 +02:00
Mark H Weaver 482cd367c6
Revert "gnu: Add python-openid." 
This reverts commit ccda568866.
 2017-04-09 03:50:40 -04:00
ng0 ccda568866
gnu: Add python-openid. 
* gnu/packages/python.scm (python-openid): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-04-08 12:40:11 -04:00
Marius Bakke a3dea99107
gnu: python2-cython: Fix build on 32-bit platforms. 
* gnu/packages/python.scm (python-cython, python2-cython)[source]: Add patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-04-04 17:46:28 +02:00
Muriithi Frederick Muriuki b98d4ec0aa
gnu: Add python-mando-0.3.1 
* gnu/packages/python.scm (python-mando-0.3.1): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-04-04 00:10:00 +02:00
Marius Bakke 350a30845c
gnu: python-pexpect: Use python-pytest@3.0. 
* gnu/packages/python.scm (python-pexpect, python2-pexpect)[native-inputs]:
Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
 2017-04-03 19:25:57 +02:00
Marius Bakke cd158a2b77
gnu: python-cython: Update to 0.25.2. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.25.2.
 2017-04-03 19:25:56 +02:00
Leo Famulari 7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages. 
* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
 2017-04-02 20:00:51 -04:00
Marius Bakke 84157bb8bf
Merge branch 'master' into core-updates 
Most conflicts are from 6fd52309b8.
 2017-03-30 22:59:53 +02:00
Leo Famulari 5e92341471
gnu: python-enum34: Update to 1.1.6. 
* gnu/packages/python.scm (python-enum34, python2-enum34): Update to 1.1.6.
[arguments]: Remove custom test phase.
 2017-03-29 16:39:04 -04:00
Marius Bakke 3ee9355e2f
gnu: python-pexpect: Add verbose test output. 
Fixes <https://bugs.gnu.org/26286>.

* gnu/packages/python.scm (python-pexpect, python2-pexpect)[arguments]: Add
"-v" to "nosetests" command.
 2017-03-29 02:31:59 +02:00
Leo Famulari 23b9168dcd
gnu: python-pytest-2.9.2: Replace with python-pytest-3.0. 
* gnu/packages/python.scm (python-pytest-2.9.2): Replace with ...
(python-pytest-3.0): ... new variable.
(python2-pytest-3.0): New variable.
(python-cryptography, python2-cryptography, python-sphinx-1.5.3)[native-inputs]:
Replace python-pytest-2.9.2 with python-pytest-3.0.
* gnu/packages/backup.scm (borg)[native-inputs]: Likewise.
gnu/packages/calendar.scm (khal)[native-inputs]: Likewise.
 2017-03-28 15:59:22 -04:00
Muriithi Frederick Muriuki eec21d4be7
gnu: Add python-mando 
* gnu/packages/python.scm (python-mando, python2-mando): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-28 15:59:22 -04:00
Muriithi Frederick Muriuki 5d0c3ba856
gnu: Add python-paramunittest 
* gnu/packages/python.scm (python-paramunittest, python2-paramunittest): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-28 15:59:22 -04:00
Muriithi Frederick Muriuki 3061b33190
gnu: Add python-sphinx@1.5.3. 
* gnu/packages/python.scm (python-sphinx-1.5.3): New variable.
 2017-03-28 15:59:22 -04:00
Muriithi Frederick Muriuki 7f71e2579a
gnu: Add python-pytest@3.0.7 
* gnu/packages/python.scm (python-pytest-3.0.7): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-28 15:59:18 -04:00
Leo Famulari c17383f400
Merge branch 'master' into core-updates 2017-03-27 21:19:38 -04:00
Efraim Flashner c5be3467f2
gnu: python2-dogtail: Update to 0.9.9. 
* gnu/packages/python.scm (python2-dogtail): Update to 0.9.9.
[source]: Download using pypi-uri scheme.
 2017-03-25 23:53:03 +03:00
Leo Famulari 26b16fd9ca
gnu: python-appdirs: Use pypi-uri. 
This is a followup to commit 543782e1ff.

* gnu/packages/python.scm (python-appdirs, python2-appdirs)[source]: Use
pypi-uri.
 2017-03-23 12:06:15 -04:00
Efraim Flashner 0371b345e8
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-23 14:53:33 +02:00
Tobias Geerinckx-Rice a06cd95ab0
gnu: python-natsort: Update to 5.0.2. 
* gnu/packages/python.scm (python-natsort): Update to 5.0.2.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice e17a12482b
gnu: python2-futures: Update to 3.0.5. 
* gnu/packages/python.scm (python2-futures): Update to 3.0.5.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice 06fe79f263
gnu: python-rauth: Update to 0.7.3. 
* gnu/packages/python.scm (python-rauth): Update to 0.7.3.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice 36e0d9db90
gnu: python-ipaddress: Update to 1.0.18. 
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.18.
 2017-03-23 02:53:16 +01:00
Tobias Geerinckx-Rice 543782e1ff
gnu: python-appdirs: Update to 1.4.3. 
* gnu/packages/python.scm (python-appdirs): Update to 1.4.3.
 2017-03-23 02:53:16 +01:00
Tobias Geerinckx-Rice 80e8d8517a
gnu: python-beautifulsoup4: Update to 4.5.3. 
* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.5.3.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice 7c4279322e
gnu: python-drmaa: Update to 0.7.7. 
* gnu/packages/python.scm (python-drmaa): Update to 0.7.7.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice fd2662e950
gnu: python-sqlalchemy-utils: Update to 0.32.13. 
* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.13.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice 745d85b7db
gnu: python-pafy: Update to 0.5.3.1. 
* gnu/packages/python.scm (python-pafy): Update to 0.5.3.1.
 2017-03-23 02:53:14 +01:00
Efraim Flashner 378de69c59
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-22 12:57:37 +02:00
Tobias Geerinckx-Rice 8e71896340
gnu: python-psycopg2: Update to 2.6.2. 
* gnu/packages/python.scm (python-psycopg2): Update to 2.6.2.
 2017-03-22 02:03:35 +01:00
Tobias Geerinckx-Rice 35e1a0f1a7
gnu: python-zope-component: Update to 4.3.0. 
* gnu/packages/python.scm (python-zope-component): Update to 4.3.0.
[source]: Use pypi-uri.
 2017-03-22 02:03:35 +01:00
Tobias Geerinckx-Rice c56ad5e291
gnu: python-atomicwrites: Update to 1.1.5. 
* gnu/packages/python.scm (python-atomicwrites): Update to 1.1.5.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice 4c4d4df393
gnu: python-texttable: Update to 0.8.7. 
* gnu/packages/python.scm (python-texttable): Update to 0.8.7.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice d5c183d134
gnu: python-feedgenerator: Update to 1.9. 
* gnu/packages/python.scm (python-feedgenerator): Update to 1.9.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice d25bee2600
gnu: python-wrapt: Update to 1.10.8. 
* gnu/packages/python.scm (python-wrapt): Update to 1.10.8.
[source]: Use pypi-uri.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice b9463fdba2
gnu: python-py: Update to 1.4.32. 
* gnu/packages/python.scm (python-py): Update to 1.4.32.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice 5095bc7d71
gnu: python-sphinx-cloud-sptheme: Update to 1.8.0. 
* gnu/packages/python.scm (python-sphinx-cloud-sptheme): Update to 1.8.0.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice 9e59478f8d
gnu: python-wcwidth: Update to 0.1.7. 
* gnu/packages/python.scm (python-wcwidth): Update to 0.1.7.
[source]: Use pypi-uri.
 2017-03-22 02:03:32 +01:00
Tobias Geerinckx-Rice 4ffbe8c6d7
gnu: python-markdown: Update to 2.6.8. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.8.
 2017-03-22 02:03:32 +01:00
Leo Famulari a9681c74ca
gnu: python-pillow: Fix test failures with freetype-2.7. 
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow, python2-pillow)[source]: Use it.
 2017-03-21 16:20:10 -04:00
Ricardo Wurmus 4f9998c66f
gnu: snakemake: Add runtime dependencies. 
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-wrapt and
python-requests.
 2017-03-20 15:13:19 +01:00
Arun Isaac 315944a393
gnu: Add python-pylint. 
* gnu/packages/python.scm (python-pylint, python2-pylint): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:31 +01:00
Arun Isaac 61550dedf3
gnu: Add python2-coverage-test-runner. 
* gnu/packages/python.scm (python2-coverage-test-runner): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:31 +01:00
Arun Isaac 23db3fc67d
gnu: Add python-configparser. 
* gnu/packages/python.scm (python-configparser, python2-configparser): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac 965a083ed2
gnu: Add python2-backports-functools-lru-cache. 
* gnu/packages/python.scm (python2-backports-functools-lru-cache): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac 6ba0af7960
gnu: Add python-isort. 
* gnu/packages/python.scm (python-isort, python2-isort): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac d5ef113c05
gnu: Add python-astroid. 
* gnu/packages/python.scm (python-astroid, python2-astroid): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Mark H Weaver f67337e23e
Merge branch 'master' into core-updates 2017-03-19 18:52:12 -04:00
Ludovic Courtès 5927a843b4
gnu: python-minimal@2: Add dependencies on libffi and zlib. 
* gnu/packages/python.scm (python2-minimal)[inputs]: Add LIBFFI and ZLIB.
[arguments]: Remove.
 2017-03-19 23:42:57 +01:00
Ricardo Wurmus ef71ed8ffa
gnu: snakemake: Update to 3.11.2. 
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
 2017-03-17 10:14:03 +01:00
Ricardo Wurmus 2d7c4ae3ee
gnu: r: Rename to r-minimal. 
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus aeb64f3cb2
gnu: r: Do not build recommended packages. 
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
 2017-03-17 10:14:02 +01:00
Efraim Flashner 4cacd87e4d
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-16 13:11:28 +02:00
Tobias Geerinckx-Rice 9186216268
gnu: python-publicsuffix2: Update to 2.20160818. 
* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
 2017-03-16 05:44:02 +01:00
Tobias Geerinckx-Rice 192b887a03
gnu: awscli: Update to 1.11.63. 
* gnu/packages/python.scm (awscli): Update to 1.11.63.
 2017-03-16 05:44:01 +01:00
Tobias Geerinckx-Rice d93985fe22
gnu: python-botocore: Update to 1.5.26. 
* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
 2017-03-16 05:44:01 +01:00
Tobias Geerinckx-Rice 70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1. 
* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
 2017-03-16 05:44:01 +01:00
Marius Bakke 4b7e5c1131
Merge branch 'master' into core-updates 2017-03-15 17:52:26 +01:00
Efraim Flashner 27bf00e691
gnu: python-waf: Update to 1.9.8. 
* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
 2017-03-15 13:08:56 +02:00
Ludovic Courtès 28958b646f
gnu: python-parsedatetime: Update to 2.3. 
Version 2.1 was apparently time-sensitive and started failing like this:

  ======================================================================
  FAIL: testFloat (tests.TestDelta.test)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 64, in testFloat
      self.cal.parse('1.4 months ago', self.source), months=-1.4)
    File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 37, in assertDelta
      self.assertTrue(diff < 0.05, '%s is not less than 0.05' % diff)
  AssertionError: 0.0666666666667 is not less than 0.05

  ----------------------------------------------------------------------

* gnu/packages/python.scm (python-parsedatetime): Update to 2.3.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
[propagated-inputs]: New field.
 2017-03-14 11:18:16 +01:00
Leo Famulari 49c2a46e74
gnu: python@2.7: Update to 2.7.13 
* gnu/packages/python.scm (python-2.7): Update to 2.7.13.
 2017-03-14 02:45:23 -04:00
Leo Famulari dc5cec21f2
gnu: python@2.7: Fix getentropy() calls on kernels < 3.17. 
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[source]: Use it.
 2017-03-14 02:45:23 -04:00
Efraim Flashner 3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-13 23:08:49 +02:00
Leo Famulari 7cb68a3cb3
gnu: Remove python-3.4. 
* gnu/packages/python.scm (python-3.4): Remove variable.
* gnu/packages/patches/python-3.4-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-13 15:33:54 -04:00
humanitiesNerd a71c863834
gnu: Add python-flask-login. 
* gnu/packages/python.scm (python-flask-login, python2-flask-login): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:56 +01:00
humanitiesNerd 78c5566365
gnu: Add python-flask-htmlmin. 
* gnu/packages/python.scm (python-flask-htmlmin, python2-flask-htmlmin): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:55 +01:00
humanitiesNerd 35db2d3cb7
gnu: Add python-htmlmin. 
* gnu/packages/python.scm (python-htmlmin, python2-htmlmin): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:54 +01:00
Marius Bakke e4d34cd0f0
gnu: python@3.5: Fix getentropy() calls on kernels < 3.17. 
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper)[source]: Use it.
 2017-03-12 18:40:56 +01:00
Marius Bakke 343cee8af3
gnu: python@3.5: Update to 3.5.3. 
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper): Update to 3.5.3.
* gnu/packages/patches/python-fix-tests.patch: Adjust patch context.
* gnu/packages/patches/python-3.5-fix-tests.patch: Likewise. Patch one new test.
 2017-03-12 18:40:56 +01:00
Arun Isaac b6b2ca5d19
gnu: Add python2-larch. 
* gnu/packages/python.scm (python2-larch): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 17:11:03 +01:00
Arun Isaac c220f0b474
gnu: Add python2-tracing. 
* gnu/packages/python.scm (python2-tracing): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 17:09:17 +01:00
Arun Isaac 77e9941160
gnu: Add python2-ttystatus. 
* gnu/packages/python.scm (python2-ttystatus): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 16:53:23 +01:00
Arun Isaac 33e9490ca1
gnu: Add python2-cliapp. 
* gnu/packages/python.scm (python2-cliapp): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 16:52:53 +01:00
Marius Bakke 6741676911
gnu: python-numpy-documentation: Use full git commit hash in submodule. 
* gnu/packages/python.scm (python-numpy-documentation,
python2-numpy-documentation)[native-inputs]: Update hash of
SCIPY-SPHINX-THEME. Fix indentation of a line.
 2017-03-09 16:39:09 +01:00
Marius Bakke 63d62305c3
gnu: Remove obsolete numpy comment. 
* gnu/packages/python.scm: Remove comment.
 2017-03-09 16:39:08 +01:00
Ludovic Courtès e90e0fad1b
Merge branch 'master' into core-updates 2017-03-09 16:35:41 +01:00
Marius Bakke b03ee02f0d
gnu: python-pandas: Fix build on 32-bit. 
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
 2017-03-08 18:04:23 +01:00
Marius Bakke ce7911ddae
gnu: Add python-faker. 
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust
paths. Also rename to ...
* gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-faker, python2-faker): New variables.
(python-fake-factory)[properties]: Superseded by PYTHON-FAKER.
(python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER.
(python-orator, python2-orator)[propagated-inputs]: Replace
PYTHON-FAKE-FACTORY with PYTHON-FAKER.
 2017-03-08 18:00:43 +01:00
Thomas Danckaert 1eaaea41e5
gnu: python-matplotlib-documentation: Fix build. 
* gnu/packages/python.scm (python-matplotlib-documentation)[native-inputs]:
Add python-mock and graphviz.
[arguments]: Use separate build and install phases; correctly set latex paper size.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-08 17:39:00 +01:00
Pjotr Prins d6abd094fc
gnu: python-rpy2: Propagate python2-singledispatch. 
* gnu/packages/python.scm (python-rp2)[native-inputs]: Rename to...
[propagated-inputs]: ... this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-07 18:19:51 +01:00
Thomas Danckaert ba062b3ec4
gnu: python-colorspacious: Run tests. 
* gnu/packages/python.scm (python-colorspacious,
python2-colorspacious)[native-inputs]: Add python-nose.
[arguments]: Add custom 'check phase which runs nosetests.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:51:23 +01:00
Thomas Danckaert 5eefa50abd
gnu: Remove python-sphinx-1.2.3. 
* gnu/packages/python.scm (python-sphinx-1.2.3, python2-sphinx-1.2.3): Remove variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:28:10 +01:00
Marius Bakke 8e08604814
gnu: python-pandas: Update to 0.19.2. 
* gnu/packages/python.scm (python-pandas, python2-pandas): Update to 0.19.2.
[source]: Use 'pypi-uri'.
 2017-03-06 23:24:03 +01:00
Thomas Danckaert 4535a93adb
gnu: python-matplotlib: Update to 2.0.0. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to
2.0.0.
[source]: Remove Tk backend patch, use Github instead of Sourceforge.
[outputs]: Remove "doc" output.
[inputs]: Add python-pyqt.
[propagated-inputs]: Add python-cycler.
[native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo.
(python2-matplotlib)[native-inputs]: Add python2-functools32 and
python2-subprocess32.
(python-matplotlib-documentation, python2-matplotlib-documentation): New
variables.
* gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:22:22 +01:00
Marius Bakke 550bd98b41
gnu: Add python2-subprocess32. 
* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-06 23:21:34 +01:00
Thomas Danckaert 7ccb71e0ea
gnu: python-numpy: Update to 1.12.0. 
* gnu/packages/python.scm (python-numpy): Update to 1.12.0.
  [source]: Use github instead of sourceforge.
  [native-inputs]: Add python-cython.

  To simplify the handling of dependency cycles (numpy documentation depends
  on matplotlib, which depends on numpy), we split out the documentation into
  a separate package:
  (python-numpy-bootstrap, python2-numpy-bootstrap): Remove variables.
  (python-numpy-documentation, python2-numpy-documentation): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:21:06 +01:00
Troy Sankey 5b1f31ffcf
gnu: python-setuptools-scm: Update to 1.15.0. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 1.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 13:55:37 +01:00
Marius Bakke c0446791bd
gnu: python2-backports-shutil-get-terminal-size: Enable tests. 
* gnu/packages/python.scm
(python2-backports-shutil-get-terminal-size)[arguments]: Replace 'check' phase
with custom command.
[native-inputs]: Add PYTHON2-PYTEST.
 2017-03-06 13:22:51 +01:00
Thomas Danckaert fb25d348dd
gnu: python-ipython: Update to 5.2.2. 
* gnu/packages/python.scm (python-ipython): Update to 5.2.2.
[propagated-inputs]: Add pyhon-prompt-toolkit and python-nbformat.
(python2-ipython) [arguments]: Enable tests.
[propagated-inputs]: Add python2-backports-shutil-get-terminal-size.
[native-inputs]: Add graphviz.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 04:35:00 +01:00
Thomas Danckaert 350932536a
gnu: python-scipy: Update to 0.18.1. 
* gnu/packages/python.scm (python-scipy): Update to 0.18.1.
[source]: Use github instead of sourceforge.
[native-inputs]: Add python-cython.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:35:26 +01:00
Thomas Danckaert b320f7bf06
gnu: python-testpath: Fix library location for python2 version. 
* gnu/packages/python.scm (python-testpath)[arguments]: Install module in the proper
"lib/pythonx.y" location for all Python versions.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:33:39 +01:00
Thomas Danckaert 2aa6d3aeeb
gnu: Add python-colorspacious. 
* gnu/packages/python.scm (python-colorspacious, python2-colorspacious): New
variables.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:24:29 +01:00
Thomas Danckaert ec07421332
gnu: Add python2-backports-shutil-get-terminal-size. 
* gnu/packages/python.scm (python2-backports-shutil-get-terminal-size): New
variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:22:30 +01:00
Marius Bakke 3f98071ac5
Merge branch 'python-tests' 2017-03-03 16:55:43 +01:00
Leo Famulari da5db9880e
gnu: python-requests: Update to 2.13.0. 
* gnu/packages/python.scm (python-requests, python2-requests): Update to 2.13.0.
 2017-03-03 04:29:55 -05:00
ng0 a80488c204
gnu: Add python-pykka. 
* gnu/packages/python.scm (python-pykka): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-02 14:02:00 -05:00
ng0 de95925041
gnu: Add python-eventlet. 
* gnu/packages/python.scm (python-eventlet): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-02 14:02:00 -05:00
Thomas Danckaert d5a9783999
gnu: python-netcdf4: Update to 1.2.7. 
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): Update to 1.2.7.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-27 14:55:39 +01:00
Marius Bakke 8779987bba
Merge branch 'master' into python-tests 2017-02-27 12:42:22 +01:00
Marius Bakke 154d0016b5
Revert "gnu: python2-fastlmm: Update to 0.2.26." 
This reverts commit 594358f5b6.
 2017-02-24 21:36:07 +01:00
Marius Bakke 3b86a385db
gnu: python-passlib: Update to 1.7.1. 
* gnu/packages/python.scm (python-passlib, python2-passlib): Update to 1.7.1.
 2017-02-24 19:44:10 +01:00
Marius Bakke 42945fb58c
gnu: python-fake-factory: Fix build on 32bit. 
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory)[source]:
Use it.
 2017-02-24 18:55:29 +01:00
Efraim Flashner fd61591850
gnu: python: Remove failing test on aarch64. 
* gnu/packages/python.scm (python-3.5)[source]: Add snippet removing
test that fails on aarch64.
 2017-02-21 21:14:57 +02:00
Efraim Flashner d15432ca9e
Merge remote-tracking branch 'origin/master' into core-updates 2017-02-20 12:56:14 +02:00
Marius Bakke 361d982ce3
gnu: Add python-cycler. 
* gnu/packages/python.scm (python-cycler, python2-cycler): New variables.
 2017-02-19 23:29:57 +01:00
Marius Bakke dc027d4014
gnu: python-pyicu: Fix build. 
* gnu/packages/python.scm (python-pyicu, python2-pyicu)[arguments]: New
field. Add phase to delete locale-dependent test.
 2017-02-19 01:20:39 +01:00
Marius Bakke 4d25c486a5
gnu: python-scikit-learn: Fix test failure. 
* gnu/packages/python.scm (python-scikit-learn,
python2-scikit-learn)[arguments]: Use 'modify-phases'. Move 'check' phase
after 'install' and incorporate 'set-HOME' phase.
 2017-02-19 01:19:33 +01:00
Marius Bakke 9200fe14f7
gnu: python-scipy: Declare python2-variant. 
This is a followup to a50e030141.

* gnu/packages/python.scm (python-scipy)[properties]: New field.
 2017-02-19 01:19:33 +01:00
Marius Bakke 2c1cad7ad2
gnu: python-flake8-polyfill: Enable tests. 
* gnu/packages/python.scm (python-flake8-polyfill,
python2-flake8-polyfill)[native-inputs]: Add PYTHON-FLAKE8, PYTHON-MOCK,
PYTHON-PYCODESTYLE and PYTHON-PYTEST. New field.
[arguments]: Replace 'check' phase with custom command.
 2017-02-19 01:19:33 +01:00
Marius Bakke d296d30013
gnu: python-flask-wtf: Drop failing test. 
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf)[arguments]:
Add phase to delete file that needs network access.
 2017-02-19 01:19:33 +01:00
Marius Bakke fffcd8b829
gnu: python-pbkdf2: Fix tests. 
* gnu/packages/python.scm (python-pbkdf2)[arguments]: Replace 'check' phase
with custom command.
 2017-02-19 01:19:33 +01:00
Marius Bakke a10b9810c6
gnu: python-sphinx: Propagate python-requests. 
* gnu/packages/python.scm (python-sphinx)[native-inputs]: Move PYTHON-REQUESTS
to ...
[propagated-inputs]: ... here.
 2017-02-19 01:19:32 +01:00
Danny Milosavljevic a1e3ed6e8b
gnu: python-pbr: Support python-sphinx>=1.2.1. 
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: New file.
* gnu/packages/python.scm (python-pbr-minimal): Use the new patch file.
 2017-02-18 16:43:37 +01:00
Leo Famulari b611d01827
gnu: python-icalendar: Update to 3.11.3. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.3.
 2017-02-15 13:03:22 -05:00
Marius Bakke 6925cd788b
gnu: python-qrcode: Disable tests. 
* gnu/packages/python.scm (python-qrcode, python2-qrcode)[arguments]: New field.
 2017-02-15 09:23:01 +01:00
Marius Bakke a31e2f1a56
gnu: python-sphinx-cloud-sptheme: Explicitly disable tests. 
* gnu/packages/python.scm (python-sphinx-cloud-sptheme,
python2-sphinx-cloud-sptheme)[arguments]: New field.
 2017-02-15 09:15:20 +01:00
Marius Bakke 5b3c3d4b5a
gnu: python-sphinx-repoze-autointerface: Disable tests. 
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface)[arguments]: New field.
 2017-02-15 09:08:11 +01:00
Marius Bakke 9893cff376
gnu: python-sphinx-rtd-theme: Disable tests. 
* gnu/packages/python.scm (python-sphinx-rtd-theme,
python2-sphinx-rtd-theme)[arguments]: New field.
 2017-02-15 09:05:56 +01:00
Marius Bakke 3d2a544c69
gnu: python-sphinxcontrib-newsfeed: Disable tests. 
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed
python2-sphinxcontrib-newsfeed)[arguments]: New field.
 2017-02-15 09:03:05 +01:00
Marius Bakke e2cb140efb
gnu: python-sphinxcontrib-programoutput: Disable tests. 
* gnu/packages/python.scm (python-sphinxcontrib-programoutput,
python2-sphinxcontrib-programoutput)[arguments]: New field.
 2017-02-15 09:01:08 +01:00