80fec17f39
gnu: docker: Patch the reference to the docker proxy.
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* gnu/packages/docker.scm (docker)[inputs]: Add docker-libnetwork-cmd-proxy.
* gnu/packages/docker.scm (docker)[phases]{patch-paths}: Patch proxy.go to
refer to the docker-proxy binary by its absolute path.
2019-05-05 21:21:02 -04:00
a01d54f3bd
gnu: docker: Optimize substitution macros.
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This change halves the time needed to patch the paths.
* gnu/packages/docker.scm (docker)[phases]{patch-paths}: Allow passing
multiple SOURCE-TEXT, PACKAGE and RELATIVE-PATH tuples so that the rewrite
rules can be generated and processed by a single use of the SUBSTITUTE*
macro. Rename SUBSTITUTE-LOOKPATH to SUBSTITUTE-LOOKPATH* and
substitute-Command to SUBSTITUTE-COMMAND* to denote the change. Adapt the
uses of SUBSTITUTE-LOOKPATH* and SUBSTITUTE-COMMAND*.
2019-05-05 21:21:02 -04:00
079f0eb3d2
gnu: docker: Make macros use a relative path as argument.
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* gnu/packages/docker.scm (docker)[phases]: Move implementation detail inside
the SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND macros definition, so that the
relative path argument can be given as a relative path.
2019-05-05 21:21:01 -04:00
3f280d3950
gnu: docker: Harmonize LookPath regexes.
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* gnu/packages/docker.scm (docker)[phases]: In the patch-paths phase, update
the regexes used by SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND to match at the
start of the word, like it's done later.
2019-05-05 21:21:01 -04:00
1b14e1bccd
gnu: docker: Cleanup extraneous comments.
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* gnu/packages/docker.scm (docker): Remove "parenthesis-balancing" comments.
2019-05-05 21:21:01 -04:00
c627932639
gnu: docker: Fix indentation.
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* gnu/packages/docker.scm (docker): Fix indentation using Emacs.
2019-05-05 21:20:58 -04:00
7a31d93a61
services: docker: Add new fields to support proxy.
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The Docker proxy enables inter-container and outside-to-container loopback,
and is required by the Docker registry server.
* gnu/services/docker.scm (docker-configuration)[proxy,
enable-proxy?]: Add fields.
(docker-shepherd-service): Use them.
(serialize-boolean): New function.
2019-05-05 20:14:15 -04:00
0b94911add
gnu: Add docker-libnetwork-cmd-proxy.
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* gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): New variable.
2019-05-05 20:14:15 -04:00
9c0244abbd
gnu: Add docker-libnetwork.
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* gnu/packages/docker.scm (docker-libnetwork): New private variable.
2019-05-05 20:14:15 -04:00
626de0d13a
gnu: Add go-netlink.
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* gnu/packages/linux.scm (go-netlink): New variable.
2019-05-05 20:14:15 -04:00
03981f9064
gnu: Add go-netns.
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* gnu/packages/networking.scm (go-netns): New variable.
2019-05-05 20:14:14 -04:00
523533ed09
gnu: Add go-sctp.
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* gnu/packages/networking.scm (go-sctp): New variable.
2019-05-05 20:14:14 -04:00
f42e4ebb56
build: go-build-system: Ensure uniform unpacking directory.
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Depending on whether the source is a directory or an archive, we strip the
source directory or preserve it, respectively. This change makes it so that
whether the type of the source, it is unpacked at the expected location given
by the IMPORT-PATH of the Go build system.
* guix/build/go-build-system.scm: Add the (ice-9 ftw) module.
(unpack): Add inner procedure to maybe strip the top level directory of an
archive, document it and use it.
2019-05-05 20:06:19 -04:00
7e84d3eef7
build: go-build-system: Use WHEN for side-effect conditionals.
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* guix/build/go-build-system.scm (unpack): Replace single branch `if' by
`when'.
2019-05-05 20:06:18 -04:00
b5f0528354
build: go-build-system: Re-ident.
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* guix/build/go-build-system.scm (unpack): Fix indentation.
2019-05-05 20:06:18 -04:00
85c1d20fa6
gnu: r-chippeakanno: Update to 3.18.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0.
[propagated-inputs]: Add r-rtracklayer.
2019-05-06 00:14:59 +02:00
c24adbbf07
gnu: r-arrmnormalization: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.24.0.
2019-05-06 00:14:59 +02:00
c2bfb978bf
gnu: r-progeny: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.6.0.
2019-05-06 00:14:59 +02:00
7d33d36c52
gnu: r-rbowtie2: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.6.0.
2019-05-06 00:14:58 +02:00
02530c2821
gnu: r-zfpkm: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.6.0.
2019-05-06 00:14:58 +02:00
67bc9255d5
gnu: r-webbioc: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.56.0.
2019-05-06 00:14:58 +02:00
c881b9ef3a
gnu: r-widgettools: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.62.0.
2019-05-06 00:14:58 +02:00
a6edf33533
gnu: r-wiggleplotr: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.8.0.
2019-05-06 00:14:58 +02:00
07597c85d8
gnu: r-wrench: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-wrench): Update to 1.2.0.
2019-05-06 00:14:58 +02:00
298f7f112f
gnu: r-xcms: Update to 3.6.0.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.0.
2019-05-06 00:14:58 +02:00
7c888138ef
gnu: r-massspecwavelet: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.50.0.
2019-05-06 00:14:58 +02:00
88469def75
gnu: r-xbseq: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.16.0.
2019-05-06 00:14:57 +02:00
0334b203d7
gnu: r-roar: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-roar): Update to 1.20.0.
2019-05-06 00:14:57 +02:00
7f4957b24e
gnu: r-yarn: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yarn): Update to 1.10.0.
2019-05-06 00:14:57 +02:00
2feea2d22a
gnu: r-quantro: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-quantro): Update to 1.18.0.
2019-05-06 00:14:57 +02:00
f48e29daa3
gnu: r-yaqcaffy: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.44.0.
2019-05-06 00:14:57 +02:00
38c5d13a73
gnu: r-simpleaffy: Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.60.0.
2019-05-06 00:14:57 +02:00
56576bea97
gnu: r-gcrma: Update to 2.56.0.
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* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.56.0.
2019-05-06 00:14:57 +02:00
edba69b2ff
gnu: r-yapsa: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.10.0.
2019-05-06 00:14:57 +02:00
3cdc5d1a7b
gnu: r-somaticsignatures: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.20.0.
2019-05-06 00:14:56 +02:00
128c6d59f0
gnu: r-gtrellis: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.0.
2019-05-06 00:14:56 +02:00
1269a926c0
gnu: r-yamss: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0.
2019-05-06 00:14:56 +02:00
2a6d838337
gnu: r-ebimage: Update to 4.26.0.
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* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0.
2019-05-06 00:14:56 +02:00
b68a9e80f4
gnu: r-aucell: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.0.
2019-05-06 00:14:56 +02:00
9da2021f49
gnu: r-allelicimbalance: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.22.0.
2019-05-06 00:14:56 +02:00
ee1a45d719
gnu: r-annotationtools: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.58.0.
2019-05-06 00:14:56 +02:00
69a2ec5447
gnu: r-annotationfuncs: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.34.0.
2019-05-06 00:14:56 +02:00
e2e1dea2bb
gnu: r-abaenrichment: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.0.
2019-05-06 00:14:55 +02:00
bab06a6ff3
gnu: r-gofuncr: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.4.0.
2019-05-06 00:14:55 +02:00
bcc233c1a6
gnu: r-atacseqqc: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.0.
[propagated-inputs]: Add r-edger.
2019-05-06 00:14:55 +02:00
19ee76379c
gnu: r-genomicscores: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.0.
2019-05-06 00:14:55 +02:00
aa0ebfd2eb
gnu: r-motifstack: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.28.0.
[propagated-inputs]: Replace r-grimport with r-grimport2.
2019-05-06 00:14:55 +02:00
f7a495b159
gnu: r-motiv: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-motiv): Update to 1.40.0.
2019-05-06 00:14:55 +02:00
a5860ebe87
gnu: r-rgadem: Update to 2.31.0.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.31.0.
2019-05-06 00:14:54 +02:00
e33c25ff2c
gnu: r-bacon: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-bacon): Update to 1.12.0.
2019-05-06 00:14:54 +02:00
Maxim Cournoyer