Fixes <http://bugs.gnu.org/22391>.
* tests/cran.scm (beautify-description: use double spacing,
beautify-description: transform fragment into sentence). Move
from here ...
* tests/import-utils.scm: ... to here. New file.
* Makefile.am (SCM_TESTS): Add import-utils.
* guix/import/cran.scm (%bioconductor-updater,
latest-bioconductor-release, bioconductor-package?): New procedures.
(cran->guix-package): Support repositories other than CRAN.
(%bioconductor-url, %bioconductor-svn-url): New variables.
(description->package): Update signature to distinguish between packages
from different repositories.
(latest-release): Rename procedure ...
(latest-cran-release): ... to this.
(cran-package?): Do not assume all R packages are available on CRAN.
* tests/cran.scm: Update tests.
* guix/scripts/import/cran.scm: Add "--archive" option and default to
CRAN.
* guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater".
* doc/guix.texi: Document Bioconductor importer and updater.
* guix/scripts/package.scm (find-packages-by-description): Change 'rx'
parameter to 'regexps'.
[matches-all?, matches-one?]: New procedures.
Use them.
(process-query): Collect regexps from all 'search' queries, and pass
them to 'find-packages-by-description'.
* tests/guix-package.sh: Add tests.
* doc/guix.texi (Invoking guix package): Document it.
Before that it would include #f for most origins since that the default
value of 'origin-patch-guile'.
* guix/scripts/graph.scm (bag-node-edges): When 'origin-patch-guile'
returns #f, use (default-guile).
* tests/graph.scm ("bag DAG, including origins"): Check for an edge from
O to (default-guile).
Fixes <http://bugs.gnu.org/22280>.
Reported by Leo Famulari <leo@famulari.name>.
* guix/scripts/graph.scm (%bag-emerged-node-type)[edges]: Mimic
%BAG-NODE-TYPE. This is a followup to 38b92da.
* guix/packages.scm (package-transitive-native-search-paths): New
procedure.
* tests/packages.scm ("package-transitive-native-search-paths"): New
test.
* guix/derivations.scm (substitution-oracle): Add #:mode parameter and
honor it.
(derivation-prerequisites-to-build): Likewise.
[derivation-built?]: Take it into account.
* guix/ui.scm (show-what-to-build): Add #:mode parameter. Pass it to
'substitute-oracle' and 'derivations-prerequisites-to-build'.
* tests/derivations.scm ("derivation-prerequisites-to-build in 'check'
mode"): New test.
* guix/store.scm (%protocol-version): Set minor to 15.
(build-mode): New enumerate type.
(build-things): Add 'mode' parameter; pass it to the RPC.
* tests/store.scm ("build-things, check mode"): New check.
* guix/scripts/lint.scm (patch-file-name): New procedure.
(check-vulnerabilities): Use it to filter out patched vulnerabilities.
* tests/lint.scm ("cve: one patched vulnerability"): New test.
* gnu/services/dmd.scm (assert-no-duplicates): Rename to...
(assert-valid-graph): ... this.
[provisions]: New variable.
[assert-satisfied-requirements]: New procedure.
Use it.
* tests/guix-system.sh: Add test with unmet dmd requirements.
Fixes <http://bugs.gnu.org/21958>.
* guix/scripts/environment.scm (status->exit-code): New procedure.
(exit/status, primitive-exit/status): Use it.
* tests/guix-environment-container.sh: Add test.
Fixes <http://bugs.gnu.org/21410>.
Reported by Alex Vong <alexvong1995@gmail.com>.
* tests/guix-environment-container.sh: Exit with 77 when
'((@@ (guix scripts environment) assert-container-features))' fails.
Fixes <http://bugs.gnu.org/21817>.
Reported by Petter Berntsen <petter@mykolab.ch>.
* guix/scripts/gc.scm (guix-gc)[assert-no-extra-arguments]: New
procedure.
Use it for actions 'collect-garbage', 'optimize', and 'verify'.
* tests/guix-gc.sh: Add tests.
Partly fixes <http://bugs.gnu.org/20255>.
* guix/scripts/package.scm (search-path-environment-variables): Change
'profile' to 'profiles'; expect it to be a list.
(display-search-paths): Likewise.
(%default-options): Remove 'profile' entry.
(%options) <--profile>: Keep previous values associated with 'profile'
in RESULT.
(guix-package)[process-actions, process-query]: Handle the possible
lack of 'profile' pair in OPTS.
This patch changes the --ad-hoc flag to be positional. That is, the
packages that appear before --ad-hoc are interpreted as packages whose
inputs should be in the environment; the packages that appear after are
interpreted as packages to be directly added to the environment.
* guix/scripts/environment.scm (tag-package-arg, compact): New
procedures.
(%options): Tweak the handlers for --load and --expression options.
(options/resolve-packages): Preserve package mode tag.
(parse-args): Tweak argument handler to use package tagging procedure.
(guix-environment): Apply ad-hoc behavior on a per package basis.
* tests/guix-environment.sh: Add test.
* doc/guix.texi ("invoking guix environment"): Document new behavior of
--ad-hoc.
* guix/scripts/substitute.scm (lookup-narinfos/diverse): New procedure.
(lookup-narinfo): Use it.
(process-query): Change #:cache-url to #:cache-urls.
[valid?]: Remove 'narinfo?' check, which is no longer necessary.
Use 'lookup-narinfos/diverse' instead of 'lookup-narinfos'.
(process-substitution): Change #:cache-url to #:cache-urls.
(%cache-url): Rename to...
(%cache-urls): ... this. Turn into a list.
(guix-substitute): Remove 'getaddrinfo' test with early exit. Adjust
calls to 'process-query' and 'process-substitution'.
* tests/substitute.scm: Change '%cache-url' to '%cache-urls'.
* guix/scripts/system.scm (specification->file-system-mapping): Move from
here...
* guix/ui.scm (specification->file-system-mapping): ... to here.
* guix/scripts/enviroment.scm (show-help): Show help for new options.
(%options): Add --container --network, --expose, and --share options.
(%network-configuration-files): New variable.
(launch-environment, launch-environment/container, requisites*,
inputs->requisites): New procedures.
(guix-environment): Spawn new process in a container when requested.
* doc/guix.texi (Invoking guix environment): Document it.
* tests/guix-environment-container.sh: New file.
* Makefile.am (SH_TESTS): Add it.
* guix/scripts/archive.scm (show-help, %options): Add --extract.
(guix-archive): Honor it.
* tests/guix-archive.sh: Test it.
* doc/guix.texi (Invoking guix archive): Document it.
This patch rewrites GuixSD services to make them extensible.
* gnu-system.am (GNU_SYSTEM_MODULES): Add gnu/services/dbus.scm.
* gnu/services.scm (<service>): Replace with new record type.
(<service-extension>, <service-type>): New record types.
(write-service-type, compute-boot-script, second-argument): New
procedures.
(%boot-service, boot-service-type): New variables.
(file-union, directory-union, modprobe-wrapper,
activation-service->script, activation-script,
gexps->activation-gexp): New procedures.
(activation-service-type, %activation-service): New variables.
(etc-directory, files->etc-directory, etc-service): New procedures.
(etc-service-type, setuid-program-service, firmware-service-type): New
variables.
(firmware->activation-gexp): New procedure.
(&service-error, &missing-target-service-error,
&ambiguous-target-service-error): New condition types.
(service-back-edges, fold-services): New procedures.
* gnu/services/avahi.scm (<avahi-configuration>): New record type.
(configuration-file): Replace keyword parameters with a single
'config' parameter.
(%avahi-accounts, %avahi-activation, avahi-service-type): New
variables.
(avahi-dmd-service): New procedure.
(avahi-service): Rewrite using 'service' and 'avahi-configuration'.
* gnu/services/base.scm (%root-file-system-dmd-service,
root-file-system-service-type): New variables.
(root-file-system-service): Use them.
(file-system->dmd-service-name): New procedure.
(file-system-service-type): New variable.
(file-system-service): Use it. Replace keyword parameters with a
single 'file-system' object.
(user-unmount-service-type): New variable.
(user-unmount-service): Use it.
(user-processes-service-type): New variable.
(user-processes-service): Use it.
(host-name-service-type): New variable.
(host-name-service): Use it.
(console-keymap-service-type): New variable.
(console-keymap-service): Use it.
(console-font-service-type): New variable.
(console-font-service): Use it.
(mingetty-pam-service, mingetty-dmd-service): New procedures.
(mingetty-service-type): New variable.
(mingetty-service): Use it.
(nscd-dmd-service): New procedure.
(nscd-activation, nscd-service-type): New variables.
(nscd-service): Use the latter.
(syslog-service-type): New variable.
(syslog-service): Use it.
(<guix-configuration>): New record type.
(%default-guix-configuration): New variable.
(guix-dmd-service, guix-accounts, guix-activation): New procedures.
(guix-service-type): New variable.
(guix-service): Replace list of keyword parameters with a single
'config' parameter. Rewrite using 'service'.
(<udev-configuration>): New record type.
(udev-dmd-service): New procedure.
(udev-service-type): New variable.
(udev-service): Use it.
(device-mapping-service-type): New variable.
(device-mapping-service): Use it.
(swap-service-type): New variable.
(swap-service): Use it.
* gnu/services/databases.scm (<postgresql-configuration>): New record
type.
(%postgresql-accounts, postgresql-activation): New variables.
(postgresql-dmd-service): New procedure.
(postgresql-service): Rewrite using 'service' and
'postgresql-configuration'.
* gnu/services/dbus.scm: New file.
* gnu/services/desktop.scm (dbus-configuration-directory, dbus-service):
Remove.
(wrapped-dbus-service): New procedure.
(<upower-configuration>): New record type.
(upower-configuration-file): Replace keyword parameters with single
<upower-configuration> parameter.
(%upower-accounts, %upower-activation): New variables.
(upower-dbus-service, upower-dmd-service): New procedures.
(upower-service-type): New variable.
(upower-service): Rewrite using 'service' and 'upower-configuration'.
(%colord-activation, %colord-accounts): New variables.
(colord-dmd-service): New procedure.
(colord-service-type): New variable.
(colord-service): Rewrite using 'service'.
(<geoclue-configuration>): New record type.
(geoclue-configuration-file): Replace keyword parameters with a single
'config' parameter.
(geoclue-dbus-service, geoclue-dmd-service): New procedures.
(%geoclue-accounts, geoclue-service-type): New variables.
(geoclue-service): Rewrite using 'service' and
'geoclue-configuration'.
(%polkit-accounts, %polkit-pam-services, polkit-service-type): New
variables.
(polkit-dmd-service): New procedure.
(polkit-service): Rewrite using 'service'.
(<elogind-configuration>)[elogind]: New field.
(elogind-dmd-service): New procedure.
(elogind-service-type): New variable.
(elogind-service): Rewrite using 'service'.
(%desktop-services): Remove argument to 'dbus-service'. Remove 'map'
over %BASE-SERVICES.
* gnu/services/dmd.scm (dmd-boot-gexp): New procedure.
(dmd-root-service-type, %dmd-root-service): New variables.
(dmd-service-type): New macro.
(<dmd-service>): New record type.
* gnu/services/lirc.scm (<lirc-configuration>): New record type.
(%lirc-activation): New variable.
(lirc-dmd-service): New procedure.
(lirc-service-type): New variable.
(lirc-service): Rewrite using 'service' and 'lirc-configuration'.
* gnu/services/networking.scm (<static-networking>): New record type.
(static-networking-service-type): New variable.
(static-networking-service): Rewrite using 'service' and
'static-networking'.
(dhcp-client-service-type): New variable.
(dhcp-client-service): Rewrite using 'service'.
(<ntp-configuration>): New record type.
(ntp-dmd-service): New procedure.
(ntp-service-type): New variable.
(ntp-service): New procedure.
(%tor-accounts, tor-service-type): New variable.
(tor-dmd-service): New procedure.
(tor-service): Rewrite using 'service'.
(<bitlbee-configuration>): New record type.
(bitlbee-dmd-service): New procedure.
(%bitlbee-accounts, %bitlbee-activation, bitlbee-service-type): New
variables.
(bitlbee-service): Rewrite using 'service'.
(%wicd-activation): New variable.
(wicd-dmd-service): New procedure.
(wicd-service-type): New variable.
(wicd-service): Rewrite using 'service'.
* gnu/services/ssh.scm (<lsh-configuration>): New record type.
(activation): Rename to...
(lsh-initialization): ... this.
(lsh-activation, lsh-dmd-service, lsh-pam-services): New procedures.
(lsh-service-type): New variable.
(lsh-service): Rewrite using 'service' and 'lsh-configuration'.
* gnu/services/web.scm (<nginx-configuration>): New record type.
(%nginx-accounts): New variable.
(nginx-activation, nginx-dmd-service): New procedures.
(nginx-service-type): New variable.
(nginx-service): Rewrite using 'service' and 'nginx-configuration'.
* gnu/services/xorg.scm (<slim-configuration>): New record type.
(slim-pam-service, slim-dmd-service): New procedures.
(slim-service-type): New variable.
(slim-service): Rewrite using 'service' and 'slim-configuration'.
* gnu/system.scm (file-union): Remove.
(other-file-system-services): Adjust to new 'file-system-service'
signature.
(essential-services): Add #:container? parameter. Add
%DMD-ROOT-SERVICE, %ACTIVATION-SERVICE, and calls to
'pam-root-service', 'account-service', 'operating-system-etc-service',
and a SETUID-PROGRAM-SERVICE instance.
(operating-system-services): Pass #:container? to 'essential-services.
(etc-directory): Remove.
(operating-system-etc-service): New procedure. Rewrite as a call to
'etc-service'.
(operating-system-accounts): Change to not return accounts required by
services.
(operating-system-etc-directory): Rewrite as a call to 'fold-services'
and 'etc-directory'.
(user-group->gexp, user-account->gexp, modprobe-wrapper): Remove.
(operating-system-activation-script): Rewrite as a call to
'fold-services' and 'activation-service->script'.
(operating-system-boot-script): Likewise.
(operating-system-derivation): Add call to 'lower-object'.
(emacs-site-file, emacs-site-directory, shells-file): Change to use
'computed-file' and 'scheme-file' instead of the monadic procedures.
* gnu/system/install.scm (cow-store-service-type): New variable.
(cow-store-service): Rewrite using 'service'.
(/etc/configuration-files): New procedure.
(configuration-template-service-type,
%configuration-template-service): New variables.
(configuration-template-service): Remove.
(installation-services): Adjust accordingly. Adjust argument to
'guix-service'.
* gnu/system/linux.scm (/etc-entry, pam-root-service): New procedures.
(pam-root-service-type): New variable.
* gnu/system/shadow.scm (user-group->gexp, user-account->gexp,
account-activation, etc-skel, account-service): New procedures.
(account-service-type): New variable.
* tests/services.scm: New file.
* doc/guix.texi (Base Services, Desktop Services): Adjust accordingly.
(Defining Services): Rewrite.
* doc/images/service-graph.dot: New file.
* doc.am (DOT_FILES): Add it.
* po/guix/POTFILES.in: Add gnu/services.scm.
Ben Woodcroft