* gnu/packages/patches/graphite2-ffloat-store.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (graphite2): Use it.
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.
* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
* gnu/packages/patches/nss-increase-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (nss)[source]: Use it.
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[source]: Use it.
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper)[source]: Use it.
This reverts the removal of "python-fake-factory-fix-build-32bit.patch"
by commit ce7911ddae.
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (texlive-texmf-src): Use it.
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu/packages/patches/kio-CVE-2017-6410.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kio)[source]: Use it.
* gnu/packages/patches/gd-php-73968-Fix-109-XBM-reading.patch: New file.
* gnu/local.scm (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu/packages/patches/fontconfig-path-max.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.
Signed-off-by: Manolis Ragkousis <manolis837@gmail.com>
* gnu/packages/patches/libdrm-symbol-check.patch: Add the extra seven
symbols from the public headers to the radeon-symbol-check to satisfy
the test. Also add aarch64-linux to the list of architectures affected.
In glibc-2.25 a dependency on "linux/falloc.h" was added.
This also reverts commit 8f8f250bdc
which is no longer needed. This commit was not compatible with
the glibc version Hurd is using. See
<https://lists.gnu.org/archive/html/guix-devel/2017-02/msg01046.html>
* guix/build/make-bootstrap.scm (make-stripped-libc): Copy "falloc.h"
to the new system.
* gnu/packages/patches/glibc-bootstrap-system.patch: Remove part
that touches fcntl-linux.h.
Problem reported by Andreas Enge <andreas@enge.fr>.
* gnu/packages/patches/libssh2-fix-build-failure-with-gcrypt.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (libssh2)[source]: Use it.
[arguments]: Add 'autoreconf' phase.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
* gnu/packages/patches/fontconfig-charwidth-symbol-conflict.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.
* gnu/packages/patches/eudev-conflicting-declaration.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (eudev)[source]: Use it.
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory)[source]:
Use it.
* gnu/packages/patches/util-linux-CVE-2017-2616.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (util-linux)[replacement]: New field.
(util-linux/fixed): New variable.
* gnu/packages/patches/libxcb-python-3.5-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxcb): Update to 1.12.
[source]: Add patch. Download from new home.
[home-page]: Change to new xcb.fd.o home.
* gnu/packages/patches/xcb-proto-python3-print.patch,
gnu/packages/patches/xcb-proto-python3-whitespace.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (xcb-proto): Update to 1.12.
[source]: Use patches. Download from new home.
[home-page]: Change to new xcb.fd.o home.
* gnu/packages/patches/xf86-input-wacom-xorg-abi-25.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (xf86-input-wacom)[source](patches): Use it.
Conflicts:
gnu/local.mk: Missing mention of gdk-pixbuf-list-dir.patch in the
commit log really confused me here... It's from 8c6b077bfa (staging).
gnu/packages/xorg.scm: xkeyboard-config updated both places.
* gnu/packages/patches/glibc-bootstrap-system.patch: Revert a change
from glibc-2.25 which would require the bootstrap-glibc to require the
linux-kernel-headers.
* gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dav.scm (vdirsyncer)[source]: Use it.
* gnu/packages/python.scm (python-pygit2, python2-pygit2)[source](patches):
New field.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/screen-CVE-2017-5618.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/screen.scm (screen)[source]: Use it.
* gnu/packages/parallel.scm (slurm): Update to 16.05.9.1.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
Removing two contribs which are added in the new version.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0.
[source]: Convert most operations in the snippet to patch form and adjust
for 2.4.0.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-base)[source]: Use it.
* gnu/packages/patches/libevent-2.1-skip-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent)[source]: Use it.
* gnu/packages/ocaml.scm (omake): New variable.
* gnu/packages/patches/omake-fix-non-determinism.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
This is a followup to commit 2429dde57d.
* gnu/packages/patches/ldc-1.1.0-disable-dmd-tests.patch,
gnu/packages/patches/ldc-1.1.0-disable-phobos-tests.patch: New files.
* gnu/packages/patches/coreutils-fix-cross-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (coreutils)[source]: Use it.
* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg-2.1.2)[source]: Use it.
* gnu/packages/patches/lcms-fix-out-of-bounds-read.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (lcms)[replacement]: New field.
[properties]: Specify the 'cpe-name'.
(lcms/fixed): New variable.
* gnu/packages/patches/libtiff-CVE-2017-5225.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
* gnu/packages/patches/cracklib-fix-buffer-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (cracklib)[source]: Use it.
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.6.
[source]: Use 'GitHub' source.
[arguments]: Run tests without 'Rakefile'.
[native-inputs]: Replace 'ruby-rspec-2' with ruby-rspec'.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/python-pygpgme-fix-pinentry-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[source]: Use it.
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
* gnu/packages/patches/khal-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/calendar.scm (khal): Use it.
* gnu/packages/patches/unrtf-CVE-2016-10091.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/unrtf.scm (unrtf)[source]: Use it.
* gnu/packages/ocaml.scm (ocaml-bitstring): New variable.
* gnu/packages/patches/ocaml-bitstring-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
Signed-off-by: David Craven <david@craven.ch>
This fixes CVE-2012-{4409,4527}.
This is a followup to commit fd1461879c.
* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: Apply the patches to the mcrypt
source code.
* gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
* gnu/packages/patches/tar-CVE-2016-6321.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (tar)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
* gnu/packages/patches/libxml2-CVE-2016-5131.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add it.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
* gnu/packages/patches/libxml2-CVE-2016-4658.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
Leo Famulari